Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN28G0243 Fragaria x ananassa HOM05D003477 ORTHO05D004043 1.7e-40 169.1 95 100.0
FvH4_1g16960 Fragaria vesca HOM05D003477 ORTHO05D004043 1.7e-37 159.1 95 94.7
FAN23G2670 Fragaria x ananassa HOM05D003477 ORTHO05D004043 1.9e-36 155.6 95 92.6
FAN19G2238 Fragaria x ananassa HOM05D003477 ORTHO05D004043 9.4e-36 153.3 92 93.5
FAN26G2600 Fragaria x ananassa HOM05D003477 ORTHO05D004043 2.1e-35 152.1 92 92.4
RcHm_v2.0_Chr2g0107061 Rosa chinensis HOM05D003477 ORTHO05D004043 2.3e-34 148.7 95 86.3
MD02G1179900 Malus domestica HOM05D003477 ORTHO05D004043 4.4e-25 117.9 95 70.5
Prupe.6G226300 Prunus persica HOM05D003477 ORTHO05D004043 7.5e-25 117.1 94 71.3
Phvul.002G014500 Phaseolus vulgaris HOM05D003477 ORTHO05D004043 3.7e-16 88.2 95 61.1
Eucgr.H02262 Eucalyptus grandis HOM05D003477 ORTHO05D004043 1.1e-15 86.7 95 61.1
SalBow6G1705 Salvia bowleyana HOM05D003477 ORTHO05D004043 2.0e-14 82.4 96 55.2
Atru.chr3.235 Acer truncatum HOM05D003477 ORTHO05D004043 3.5e-14 81.6 90 56.7
Dinv15774 Davidia involucrata HOM05D003477 ORTHO05D004043 4.5e-14 81.3 94 56.4
TWI79G1417 Tripterygium wilfordii HOM05D003477 ORTHO05D004043 4.5e-14 81.3 93 54.8
arahy.Tifrunner.gnm1.ann1.VE84TY Arachis hypogaea HOM05D003477 ORTHO05D004043 7.7e-14 80.5 94 58.5
Glyma.01G190500 Glycine max HOM05D003477 ORTHO05D004043 7.7e-14 80.5 95 58.9
Lalb_Chr05g0226121 Lupinus albus HOM05D003477 ORTHO05D004043 1.0e-13 80.1 95 58.9
PSO210G4486 Papaver somniferum HOM05D003477 ORTHO05D004043 1.0e-13 80.1 97 52.6
Actinidia16453 Actinidia chinensis HOM05D003477 ORTHO05D004043 2.9e-13 78.6 95 54.7
Actinidia21247 Actinidia chinensis HOM05D003477 ORTHO05D004043 2.9e-13 78.6 95 54.7
arahy.Tifrunner.gnm1.ann1.T63M72 Arachis hypogaea HOM05D003477 ORTHO05D004043 3.8e-13 78.2 92 58.7
CSS0020585 Camellia sinensis var. sinensis HOM05D003477 ORTHO05D004043 3.8e-13 78.2 96 57.3
TAR625G0309 Trochodendron aralioides HOM05D003477 ORTHO05D004043 3.8e-13 78.2 94 56.4
Dinv26882 Davidia involucrata HOM05D003477 ORTHO05D004043 6.5e-13 77.4 92 56.5
QL11p032673 Quercus lobata HOM05D003477 ORTHO05D004043 1.1e-12 76.6 94 52.1
ClCG05G010360 Citrullus lanatus HOM05D003477 ORTHO05D004043 3.2e-12 75.1 94 46.8
CiPaw.05G013300 Carya illinoinensis HOM05D003477 ORTHO05D004043 4.2e-12 74.7 95 50.5
Prupe.8G137400 Prunus persica HOM05D003477 ORTHO05D004043 4.2e-12 74.7 94 48.9
TWI31G0442 Tripterygium wilfordii HOM05D003477 ORTHO05D004043 4.2e-12 74.7 94 51.1
TAR376G0403 Trochodendron aralioides HOM05D003477 ORTHO05D004043 4.2e-12 74.7 94 56.4
Lj2g0006602 Lotus japonicus HOM05D003477 ORTHO05D004043 5.5e-12 74.3 95 55.8
QL06p040030 Quercus lobata HOM05D003477 ORTHO05D004043 5.5e-12 74.3 94 54.3
TAR381G0852 Trochodendron aralioides HOM05D003477 ORTHO05D004043 5.5e-12 74.3 93 52.7
Dinv42204 Davidia involucrata HOM05D003477 ORTHO05D004043 7.2e-12 73.9 93 55.9
Nn5g30458 Nelumbo nucifera HOM05D003477 ORTHO05D004043 7.2e-12 73.9 95 51.6
Rhsim05G0089200 Rhododendron simsii HOM05D003477 ORTHO05D004043 1.2e-11 73.2 90 54.4
SalBow3G1026 Salvia bowleyana HOM05D003477 ORTHO05D004043 1.2e-11 73.2 101 53.5
MD10G1099700 Malus domestica HOM05D003477 ORTHO05D004043 2.1e-11 72.4 93 47.3
Nn1g04659 Nelumbo nucifera HOM05D003477 ORTHO05D004043 2.1e-11 72.4 95 49.5
SGA_v2.0_scaffold32G13034 Striga asiatica HOM05D003477 ORTHO05D004043 2.1e-11 72.4 99 50.5
Ca_24733_v3 Cicer arietinum L. HOM05D002634 ORTHO05D003100 2.8e-11 72.0 95 53.7
Cc07_g06600 Coffea canephora HOM05D003477 ORTHO05D004043 2.8e-11 72.0 98 59.2
CAN.G606.19 Capsicum annuum HOM05D003477 ORTHO05D004043 3.6e-11 71.6 94 47.9
AUR62003947 Chenopodium quinoa HOM05D003477 ORTHO05D004043 3.6e-11 71.6 94 48.9
SGA_v2.0_scaffold225G42992 Striga asiatica HOM05D003477 ORTHO05D004043 3.6e-11 71.6 95 50.5
Migut.B00399 Erythranthe guttata HOM05D003477 ORTHO05D004043 4.7e-11 71.2 98 50.0
CANSAT25G3186 Cannabis sativa HOM05D003477 ORTHO05D004043 6.1e-11 70.9 94 51.1
Solyc01g107450.4 Solanum lycopersicum HOM05D003477 ORTHO05D004043 1.0e-10 70.1 93 47.3
PGSC0003DMG400025859 Solanum tuberosum HOM05D003477 ORTHO05D004043 1.0e-10 70.1 94 46.8
AUR62038261 Chenopodium quinoa HOM05D003477 ORTHO05D004043 1.4e-10 69.7 94 47.9
ECA238G3264 Erigeron canadensis HOM05D003477 ORTHO05D004043 1.4e-10 69.7 97 48.5
MBI04_g11440_MAGBIO Magnolia biondii HOM05D003477 ORTHO05D004043 1.4e-10 69.7 93 49.5
Manes.10G075200 Manihot esculenta HOM05D003477 ORTHO05D004043 1.4e-10 69.7 95 46.3
PSO675G3465 Papaver somniferum HOM05D003477 ORTHO05D004043 1.4e-10 69.7 99 49.5
Sed0015852 Sechium edule HOM05D003477 ORTHO05D004043 1.4e-10 69.7 95 48.4
Aqoxy6G02834 Aquilegia oxysepala HOM05D003477 ORTHO05D004043 1.8e-10 69.3 97 47.4
DCAR_025766 Daucus carota HOM05D003477 ORTHO05D004043 1.8e-10 69.3 94 55.3
CDE02G3617 Ceratophyllum demersum HOM05D003477 ORTHO05D004043 2.3e-10 68.9 96 46.9
Sopen01g049690 Solanum pennellii HOM05D003477 ORTHO05D004043 2.3e-10 68.9 93 47.3
Hund16371 Selenicereus undatus HOM05D003477 ORTHO05D004043 3.0e-10 68.6 100 47.0
arahy.Tifrunner.gnm1.ann1.K085P0 Arachis hypogaea HOM05D003477 ORTHO05D004043 5.2e-10 67.8 96 51.0
FAN15G1392 Fragaria x ananassa HOM05D003477 ORTHO05D004043 5.2e-10 67.8 94 48.9
Oeu013760.1 Olea europaea HOM05D003477 ORTHO05D004043 5.2e-10 67.8 94 50.0
Gohir.A03G185500 Gossypium hirsutum HOM05D003477 ORTHO05D004043 6.8e-10 67.4 94 48.9
Oeu029533.3 Olea europaea HOM05D003477 ORTHO05D004043 6.8e-10 67.4 93 51.6
Solyc02g092830.4 Solanum lycopersicum HOM05D003477 ORTHO05D004043 6.8e-10 67.4 88 54.5
VMungo0720G2427 Vigna mungo HOM05D003477 ORTHO05D004043 6.8e-10 67.4 96 51.0
Actinidia03815 Actinidia chinensis HOM05D003477 ORTHO05D004043 8.8e-10 67.0 83 56.6
DCAR_029094 Daucus carota HOM05D003477 ORTHO05D004043 8.8e-10 67.0 94 47.9
Manes.07G066700 Manihot esculenta HOM05D003477 ORTHO05D004043 8.8e-10 67.0 95 46.3
Medtr5g016330 Medicago truncatula HOM05D003477 ORTHO05D004043 8.8e-10 67.0 92 51.1
Psat2g169360 Pisum sativum HOM05D003477 ORTHO05D004043 8.8e-10 67.0 95 51.6
Sc16g0001450 Simmondsia chinensis HOM05D003477 ORTHO05D004043 8.8e-10 67.0 96 46.9
EL10Ac6g15680 Beta vulgaris HOM05D003477 ORTHO05D004043 1.2e-09 66.6 95 47.4
Cfa004078 Carpinus fangiana HOM05D003477 ORTHO05D004043 1.2e-09 66.6 99 49.5
FvH4_2g04800 Fragaria vesca HOM05D003477 ORTHO05D004043 1.2e-09 66.6 94 50.0
Sopen02g037390 Solanum pennellii HOM05D003477 ORTHO05D004043 1.2e-09 66.6 88 53.4
Gorai.005G234400 Gossypium raimondii HOM05D003477 ORTHO05D004043 1.5e-09 66.2 95 47.4
GSVIVG01037899001 Vitis vinifera HOM05D003477 ORTHO05D004043 1.5e-09 66.2 80 48.8
Actinidia08244 Actinidia chinensis HOM05D003477 ORTHO05D004043 2.0e-09 65.9 84 56.0
Duzib132G0501 Durio zibethinus HOM05D003477 ORTHO05D004043 2.0e-09 65.9 94 45.7
Gohir.D02G206836 Gossypium hirsutum HOM05D003477 ORTHO05D004043 2.0e-09 65.9 94 47.9
Phvul.007G041500 Phaseolus vulgaris HOM05D003477 ORTHO05D004043 2.0e-09 65.9 95 50.5
FAN27G0803 Fragaria x ananassa HOM05D003477 ORTHO05D004043 2.6e-09 65.5 94 47.9
Potri.001G298800 Populus trichocarpa HOM05D003477 ORTHO05D004043 2.6e-09 65.5 95 49.5
CSS0007946 Camellia sinensis var. sinensis HOM05D003477 ORTHO05D004043 3.4e-09 65.1 93 49.5
CSS0046932 Camellia sinensis var. sinensis HOM05D003477 ORTHO05D004043 3.4e-09 65.1 93 49.5
CDE01G0745 Ceratophyllum demersum HOM05D003477 ORTHO05D004043 3.4e-09 65.1 94 44.7
Thecc.02G111100 Theobroma cacao HOM05D003477 ORTHO05D004043 3.4e-09 65.1 94 45.7
vmacro19455 Vaccinium macrocarpon HOM05D003477 ORTHO05D004043 3.4e-09 65.1 94 48.9
arahy.Tifrunner.gnm1.ann1.S3TCSS Arachis hypogaea HOM05D003477 ORTHO05D004043 4.4e-09 64.7 96 50.0
CsaV3_3G018130 Cucumis sativus L. HOM05D003477 ORTHO05D004043 5.7e-09 64.3 95 45.3
Hma1.2p1_1023F.1_g249010 Hydrangea macrophylla HOM05D003477 ORTHO05D004043 5.7e-09 64.3 93 53.8
Peaxi162Scf00945g00014 Petunia axillaris HOM05D003477 ORTHO05D004043 5.7e-09 64.3 88 48.9
Rhsim11G0156400 Rhododendron simsii HOM05D003477 ORTHO05D004043 5.7e-09 64.3 93 49.5
RcHm_v2.0_Chr6g0254531 Rosa chinensis HOM05D003477 ORTHO05D004043 5.7e-09 64.3 95 49.5
DCAR_001659 Daucus carota HOM05D003477 ORTHO05D004043 7.5e-09 63.9 94 47.9
FAN24G0602 Fragaria x ananassa HOM05D003477 ORTHO05D004043 7.5e-09 63.9 94 48.9
Actinidia00402 Actinidia chinensis HOM05D003477 ORTHO05D004043 9.8e-09 63.5 94 48.9
ATR0315G039 Amborella trichopoda HOM05D003477 ORTHO05D004043 9.8e-09 63.5 93 45.2
Ca_11060_v3 Cicer arietinum L. HOM05D003477 ORTHO05D004043 9.8e-09 63.5 97 51.5
Gohir.D12G021600 Gossypium hirsutum HOM05D003477 ORTHO05D004043 9.8e-09 63.5 94 44.7
Nitab4.5_0001119g0150 Nicotiana tabacum HOM05D003477 ORTHO05D004043 9.8e-09 63.5 88 52.3
Nitab4.5_0001439g0010 Nicotiana tabacum HOM05D003477 ORTHO05D004043 9.8e-09 63.5 88 50.0
Duzib052G0507 Durio zibethinus HOM05D003477 ORTHO05D004043 1.3e-08 63.2 95 44.2
ECA240G1244 Erigeron canadensis HOM05D003477 ORTHO05D004043 1.3e-08 63.2 93 51.6
Rhsim11G0157900 Rhododendron simsii HOM05D003477 ORTHO05D004043 1.3e-08 63.2 93 49.5
FAN20G0459 Fragaria x ananassa HOM05D003477 ORTHO05D004043 1.7e-08 62.8 94 47.9
Gorai.008G021900 Gossypium raimondii HOM05D003477 ORTHO05D004043 1.7e-08 62.8 95 43.2
PGSC0003DMG400024979 Solanum tuberosum HOM05D003477 ORTHO05D004043 1.7e-08 62.8 88 52.3
Carub.0003s2895 Capsella rubella HOM05D003477 ORTHO05D004043 3.7e-08 61.6 96 43.8
Cc02_g19410 Coffea canephora HOM05D003477 ORTHO05D004043 3.7e-08 61.6 94 44.7
Medtr1g107085 Medicago truncatula HOM05D003477 ORTHO05D004043 4.9e-08 61.2 98 49.0
Psat6g216680 Pisum sativum HOM05D003477 ORTHO05D004043 6.3e-08 60.8 98 50.0
Sp7g32050 Schrenkiella parvula HOM05D003477 ORTHO05D004043 8.3e-08 60.5 46 58.7
CARHR105430 Cardamine hirsuta HOM05D003477 ORTHO05D004043 1.1e-07 60.1 104 44.2
CiPaw.01G009400 Carya illinoinensis HOM05D003477 ORTHO05D004043 1.1e-07 60.1 99 51.5
Haze_10200 Corylus avellana HOM05D003477 ORTHO05D004043 1.1e-07 60.1 94 46.8
Actinidia34393 Actinidia chinensis HOM05D003477 ORTHO05D004043 1.4e-07 59.7 95 47.4
Lsat_1_v5_gn_9_111940 Lactuca sativa HOM05D003477 ORTHO05D004043 1.4e-07 59.7 94 44.7
Sed0009886 Sechium edule HOM05D003477 ORTHO05D004043 1.4e-07 59.7 95 43.2
Carub.0007s0610 Capsella rubella HOM05D003477 ORTHO05D004043 1.8e-07 59.3 97 45.4
Thhalv10022939m.g Eutrema salsugineum HOM05D003477 ORTHO05D004043 1.8e-07 59.3 96 42.7
Lsat_1_v5_gn_2_85381 Lactuca sativa HOM05D003477 ORTHO05D004043 1.8e-07 59.3 100 45.0
Lalb_Chr02g0145231 Lupinus albus HOM05D003477 ORTHO05D004043 1.8e-07 59.3 95 49.5
vmacro01991 Vaccinium macrocarpon HOM05D003477 ORTHO05D004043 1.8e-07 59.3 94 46.8
CsaV3_7G008070 Cucumis sativus L. HOM05D010572 ORTHO05D012753 2.4e-07 58.9 96 43.8
Lj5g0009419 Lotus japonicus HOM05D003477 ORTHO05D004043 2.4e-07 58.9 96 47.9
Aa31LG2G16840 Aethionema arabicum HOM05D003477 ORTHO05D004043 3.1e-07 58.5 96 43.8
Duzib248G0529 Durio zibethinus HOM05D003477 ORTHO05D004043 3.1e-07 58.5 94 44.7
Lalb_Chr21g0308261 Lupinus albus HOM05D003477 ORTHO05D004043 4.1e-07 58.2 96 46.9
PSO675G8803 Papaver somniferum HOM05D003477 ORTHO05D004043 4.1e-07 58.2 95 44.2
Glyma.20G130500 Glycine max HOM05D003477 ORTHO05D004043 5.4e-07 57.8 95 50.5
Nitab4.5_0003699g0030 Nicotiana tabacum HOM05D003477 ORTHO05D004043 5.4e-07 57.8 93 47.3
PSO675G6764 Papaver somniferum HOM05D003477 ORTHO05D004043 5.4e-07 57.8 94 43.6
Gohir.A12G021300 Gossypium hirsutum HOM05D003477 ORTHO05D004043 7.0e-07 57.4 95 42.1
Sabra16G0187400 Salix brachista HOM05D003477 ORTHO05D004043 7.0e-07 57.4 94 44.7
Glyma.18G192300 Glycine max HOM05D003477 ORTHO05D004043 9.2e-07 57.0 94 48.9
Sed0021400 Sechium edule HOM05D003477 ORTHO05D004043 9.2e-07 57.0 95 42.1
AT4G34265 Arabidopsis thaliana HOM05D003477 ORTHO05D004043 1.2e-06 56.6 96 41.7
MELO3C018498.2 Cucumis melo HOM05D003477 ORTHO05D004043 1.2e-06 56.6 94 41.5
Duzib248G0862 Durio zibethinus HOM05D003477 ORTHO05D004043 1.6e-06 56.2 91 42.9
Peaxi162Scf00152g00313 Petunia axillaris HOM05D003477 ORTHO05D004043 1.6e-06 56.2 81 50.6
Ciclev10027007m.g Citrus clementina HOM05D003477 ORTHO05D004043 2.7e-06 55.5 95 45.3
PSO541G5514 Papaver somniferum HOM05D003477 ORTHO05D004043 2.7e-06 55.5 95 42.1
Cpa.g.sc106.115 Carica papaya HOM05D003477 ORTHO05D004043 3.5e-06 55.1 94 43.6
Potri.009G093400 Populus trichocarpa HOM05D003477 ORTHO05D004043 3.5e-06 55.1 96 45.8
BolC1t00438H Brassica oleracea HOM05D003477 ORTHO05D004043 5.9e-06 54.3 95 41.1
BcaC06g36034 Brassica carinata HOM05D003477 ORTHO05D004043 7.8e-06 53.9 95 41.1
ClCG02G006540 Citrullus lanatus HOM05D003477 ORTHO05D004043 7.8e-06 53.9 100 44.0
HanXRQChr03g0068771 Helianthus annuus HOM05D003477 ORTHO05D004043 7.8e-06 53.9 93 45.2
MD04G1063100 Malus domestica HOM05D006762 ORTHO05D003505 7.8e-06 53.9 98 46.9


User provided reference genes

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