Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN28G0191 Fragaria x ananassa HOM05D005798 ORTHO05D007269 6.3e-235 817.0 398 100.0
FAN26G0835 Fragaria x ananassa HOM05D005798 ORTHO05D007269 2.8e-230 801.6 398 97.5
FvH4_1g25731 Fragaria vesca HOM05D005798 ORTHO05D007269 3.7e-227 791.2 398 96.5
FAN23G2651 Fragaria x ananassa HOM05D005798 ORTHO05D007269 7.0e-226 786.9 398 96.2
RcHm_v2.0_Chr1g0343251 Rosa chinensis HOM05D005798 ORTHO05D007269 7.8e-209 730.3 398 89.4
Prupe.2G112300 Prunus persica HOM05D005798 ORTHO05D007269 9.6e-183 643.7 398 77.1
MD02G1227400 Malus domestica HOM05D005798 ORTHO05D007269 1.8e-181 639.4 398 76.6
MD07G1086000 Malus domestica HOM05D005798 ORTHO05D007269 2.4e-181 639.0 398 76.4
QL04p025438 Quercus lobata HOM05D005798 ORTHO05D007269 3.1e-165 585.5 397 71.3
CiPaw.13G020800 Carya illinoinensis HOM05D005798 ORTHO05D007269 5.8e-164 581.3 399 69.7
Ciclev10020482m.g Citrus clementina HOM05D005798 ORTHO05D007269 2.7e-161 572.4 400 70.2
Atru.chr5.24 Acer truncatum HOM05D005798 ORTHO05D007269 1.0e-160 570.5 398 68.6
Atru.chr5.52 Acer truncatum HOM05D005798 ORTHO05D007269 1.3e-160 570.1 398 68.6
Manes.05G060100 Manihot esculenta HOM05D005798 ORTHO05D007269 2.5e-159 565.8 391 69.8
Duzib128G1323 Durio zibethinus HOM05D005798 ORTHO05D007269 1.1e-157 560.5 398 67.1
Thecc.10G001400 Theobroma cacao HOM05D005798 ORTHO05D007269 4.1e-157 558.5 398 66.8
vmacro21093 Vaccinium macrocarpon HOM05D005798 ORTHO05D007269 7.7e-156 554.3 399 67.2
TWI59G0898 Tripterygium wilfordii HOM05D005798 ORTHO05D007269 1.1e-154 550.4 389 66.6
Gorai.011G295600 Gossypium raimondii HOM05D005798 ORTHO05D007269 3.2e-154 548.9 399 66.9
Cc02_g25760 Coffea canephora HOM05D005798 ORTHO05D007269 1.2e-153 547.0 389 65.0
CSS0042045 Camellia sinensis var. sinensis HOM05D005798 ORTHO05D007269 2.1e-153 546.2 397 67.3
Gohir.A10G242600 Gossypium hirsutum HOM05D005798 ORTHO05D007269 6.1e-153 544.7 399 66.4
Gohir.D10G254600 Gossypium hirsutum HOM05D005798 ORTHO05D007269 7.9e-153 544.3 399 66.4
Potri.001G346900 Populus trichocarpa HOM05D005798 ORTHO05D007269 1.4e-152 543.5 394 66.2
Sabra16G0226600 Salix brachista HOM05D005798 ORTHO05D007269 2.3e-152 542.7 390 66.2
CANSAT21G0894 Cannabis sativa HOM05D005798 ORTHO05D007269 5.7e-151 538.1 391 66.5
Lj1g0019008 Lotus japonicus HOM05D005798 ORTHO05D007269 1.2e-148 530.4 398 61.3
Peaxi162Scf01124g00121 Petunia axillaris HOM05D005798 ORTHO05D007269 3.4e-148 528.9 389 64.8
Glyma.04G128400 Glycine max HOM05D005798 ORTHO05D007269 4.5e-148 528.5 396 62.4
Phvul.005G016200 Phaseolus vulgaris HOM05D005798 ORTHO05D007269 7.7e-148 527.7 398 61.3
Lalb_Chr19g0126311 Lupinus albus HOM05D005798 ORTHO05D007269 5.0e-147 525.0 398 62.6
Medtr0103s0100 Medicago truncatula HOM05D005798 ORTHO05D007269 6.5e-147 524.6 400 61.8
Nitab4.5_0009219g0010 Nicotiana tabacum HOM05D005798 ORTHO05D007269 3.2e-146 522.3 389 64.8
arahy.Tifrunner.gnm1.ann1.1MA0KJ Arachis hypogaea HOM05D005798 ORTHO05D007269 5.5e-146 521.5 401 61.8
Glyma.06G310400 Glycine max HOM05D005798 ORTHO05D007269 7.2e-146 521.2 396 61.1
arahy.Tifrunner.gnm1.ann1.6FN2NF Arachis hypogaea HOM05D005798 ORTHO05D007269 9.4e-146 520.8 401 61.6
Nitab4.5_0013532g0010 Nicotiana tabacum HOM05D005798 ORTHO05D007269 2.1e-145 519.6 389 63.8
Psat3g172680 Pisum sativum HOM05D005798 ORTHO05D007269 2.1e-145 519.6 390 62.3
Nn2g10726 Nelumbo nucifera HOM05D005798 ORTHO05D007269 2.7e-145 519.2 393 62.3
Sopen01g035220 Solanum pennellii HOM05D005798 ORTHO05D007269 4.7e-145 518.5 389 63.5
VMungo1080G0989 Vigna mungo HOM05D005798 ORTHO05D007269 6.1e-145 518.1 398 60.6
Solyc01g088390.3 Solanum lycopersicum HOM05D005798 ORTHO05D007269 1.0e-144 517.3 389 63.0
CAN.G1480.2 Capsicum annuum HOM05D005798 ORTHO05D007269 6.7e-144 514.6 389 63.0
PGR004G1878 Punica granatum HOM05D005798 ORTHO05D007269 7.4e-143 511.1 389 63.2
MSTRG.20650 Avicennia marina HOM05D005798 ORTHO05D007269 9.7e-143 510.8 390 63.8
PGSC0003DMG400001703 Solanum tuberosum HOM05D005798 ORTHO05D007269 1.3e-142 510.4 389 63.0
MELO3C006251.2 Cucumis melo HOM05D005798 ORTHO05D007269 1.7e-142 510.0 399 61.9
PGR004G0434 Punica granatum HOM05D005798 ORTHO05D007269 1.7e-142 510.0 389 63.0
ClCG05G002770 Citrullus lanatus HOM05D005798 ORTHO05D007269 2.8e-142 509.2 398 61.1
THA.LOC104817171 Tarenaya hassleriana HOM05D005798 ORTHO05D007269 6.3e-142 508.1 399 62.4
Hund17139 Selenicereus undatus HOM05D005798 ORTHO05D007269 1.8e-141 506.5 389 62.7
Ca_03850_v3 Cicer arietinum L. HOM05D005798 ORTHO05D007269 2.4e-141 506.1 389 61.2
CsaV3_3G010280 Cucumis sativus L. HOM05D005798 ORTHO05D007269 7.0e-141 504.6 399 61.2
Migut.B01472 Erythranthe guttata HOM05D005798 ORTHO05D007269 2.6e-140 502.7 389 64.3
Sed0012756 Sechium edule HOM05D005798 ORTHO05D007269 1.7e-139 500.0 398 60.3
AUR62031252 Chenopodium quinoa HOM05D005798 ORTHO05D007269 3.8e-139 498.8 388 61.6
Sc26g0001830 Simmondsia chinensis HOM05D005798 ORTHO05D007269 5.0e-139 498.4 388 61.9
Eucgr.D01150 Eucalyptus grandis HOM05D005798 ORTHO05D007269 8.5e-139 497.7 399 60.7
EL10Ac8g19272 Beta vulgaris HOM05D005798 ORTHO05D007269 1.9e-138 496.5 387 62.5
AUR62027448 Chenopodium quinoa HOM05D005798 ORTHO05D007269 2.5e-138 496.1 388 61.6
Oeu024375.1 Olea europaea HOM05D005798 ORTHO05D007269 4.7e-137 491.9 374 62.3
Oeu024376.1 Olea europaea HOM05D005798 ORTHO05D007269 4.7e-137 491.9 374 62.3
Aa31LG1G26140 Aethionema arabicum HOM05D005798 ORTHO05D007269 3.0e-136 489.2 389 60.4
ECA234G4178 Erigeron canadensis HOM05D005798 ORTHO05D007269 8.8e-136 487.6 383 60.1
AL4G43620 Arabidopsis lyrata HOM05D005798 ORTHO05D007269 3.3e-135 485.7 394 60.2
PSO017G1219 Papaver somniferum HOM05D005798 ORTHO05D007269 2.2e-134 483.0 393 59.8
AT2G44580 Arabidopsis thaliana HOM05D005798 ORTHO05D007269 8.2e-134 481.1 394 59.9
PSO782G4885 Papaver somniferum HOM05D005798 ORTHO05D007269 1.4e-133 480.3 393 59.3
HanXRQChr16g0519531 Helianthus annuus HOM05D005798 ORTHO05D007269 5.3e-133 478.4 400 59.0
Sp4g26670 Schrenkiella parvula HOM05D005798 ORTHO05D007269 3.5e-132 475.7 391 59.3
PSO063G7295 Papaver somniferum HOM05D005798 ORTHO05D007269 5.0e-131 471.9 403 57.8
CARHR139800 Cardamine hirsuta HOM05D005798 ORTHO05D007269 1.5e-130 470.3 384 60.2
BcaB02g08835 Brassica carinata HOM05D005798 ORTHO05D007269 9.4e-130 467.6 392 57.4
Carub.0004s2713 Capsella rubella HOM05D005798 ORTHO05D007269 8.0e-129 464.5 395 59.2
Lj7C553T5 Lonicera japonica HOM05D005798 ORTHO05D007269 4.0e-128 462.2 390 59.7
BcaC02g12292 Brassica carinata HOM05D005798 ORTHO05D007269 6.8e-128 461.5 394 56.9
C04p05550 Brassica napus HOM05D005798 ORTHO05D007269 6.8e-128 461.5 394 56.9
BraA05t19450Z Brassica rapa HOM05D005798 ORTHO05D007269 6.8e-128 461.5 395 58.0
BolC4t22185H Brassica oleracea HOM05D005798 ORTHO05D007269 1.2e-127 460.7 398 56.8
MBI05_g22048_MAGBIO Magnolia biondii HOM05D005798 ORTHO05D007269 1.5e-127 460.3 389 57.3
A05p04740 Brassica napus HOM05D005798 ORTHO05D007269 2.6e-127 459.5 395 57.5
TPR.G30814 Trifolium pratense HOM05D005798 ORTHO05D007269 5.3e-125 451.8 345 61.4
unitig_52.g17377 Utricularia gibba HOM05D005798 ORTHO05D007269 3.2e-122 442.6 399 54.6
Ah.14g086050 Amaranthus hybridus HOM05D005798 ORTHO05D007269 1.0e-120 437.6 385 57.9
Thhalv10001723m.g Eutrema salsugineum HOM05D005798 ORTHO05D007269 1.0e-120 437.6 368 57.9
COL.COLO4_19318 Corchorus olitorius HOM05D005798 ORTHO05D007269 1.3e-118 430.6 314 65.0
SEGI_02869 Sequoiadendron giganteum HOM05D005798 ORTHO05D007269 2.7e-116 422.9 395 51.4
HPP92_011679 Vanilla planifolia HOM05D005798 ORTHO05D007269 2.5e-114 416.4 390 53.6
Zm00001eb112030 Zea mays HOM05D005798 ORTHO05D007269 3.6e-113 412.5 395 51.6
Actinidia33294 Actinidia chinensis HOM05D005798 ORTHO05D007269 2.3e-112 409.8 372 55.9
Os05g0119600 Oryza sativa ssp. japonica HOM05D005798 ORTHO05D007269 2.0e-111 406.8 379 53.0
Nn1g00612 Nelumbo nucifera HOM05D005798 ORTHO05D007269 3.5e-108 396.0 276 64.5
CDE06G2636 Ceratophyllum demersum HOM05D005798 ORTHO05D007269 4.3e-106 389.0 362 53.6
SGA_v2.0_scaffold17G08178 Striga asiatica HOM05D005798 ORTHO05D007269 1.0e-104 384.4 353 53.3
ATR0585G014 Amborella trichopoda HOM05D005798 ORTHO05D007269 1.9e-101 373.6 394 49.7
Rhsim01G0145000 Rhododendron simsii HOM05D005798 ORTHO05D007269 5.0e-99 365.5 386 49.5
Cpa.g.sc3387.1 Carica papaya HOM05D005798 ORTHO05D007269 1.5e-98 364.0 243 68.7
Dinv43575 Davidia involucrata HOM05D005798 ORTHO05D007269 4.4e-95 352.4 263 65.0
TAR375G0847 Trochodendron aralioides HOM05D005798 ORTHO05D007269 4.3e-90 335.9 267 61.8
Pp3c5_22720 Physcomitrium patens HOM05D005798 ORTHO05D007269 2.1e-89 333.6 390 43.1
AagrBONN_evm.TU.Sc2ySwM_344.2100 Anthoceros agrestis HOM05D005798 ORTHO05D007269 1.2e-79 301.2 364 42.9
GSVIVG01018417001 Vitis vinifera HOM05D005798 ORTHO05D007269 1.5e-79 300.8 192 71.9
Mapoly0001s0452 Marchantia polymorpha HOM05D005798 ORTHO05D007269 1.3e-78 297.7 399 39.8
Actinidia21608 Actinidia chinensis HOM05D005798 ORTHO05D007269 1.9e-66 257.3 160 74.4
Nn3g19112 Nelumbo nucifera HOM05D005798 ORTHO05D007269 1.8e-64 250.8 248 49.2
Lsat_1_v5_gn_4_46040 Lactuca sativa HOM05D005798 ORTHO05D007269 4.0e-64 249.6 193 60.1
Prupe.2G112500 Prunus persica HOM05D005798 ORTHO05D007269 5.8e-63 245.7 154 79.2
Nn1g07358 Nelumbo nucifera HOM05D005798 ORTHO05D007269 6.7e-59 232.3 195 59.5
Haze_02923 Corylus avellana HOM05D005798 ORTHO05D007269 8.7e-59 231.9 195 61.5
Prupe.2G112400 Prunus persica HOM05D005798 ORTHO05D007269 2.6e-55 220.3 201 57.7
Peaxi162Scf00417g00029 Petunia axillaris HOM05D005798 ORTHO05D007269 5.8e-55 219.2 233 47.2
Nn3g19416 Nelumbo nucifera HOM05D005798 ORTHO05D007269 1.6e-52 211.1 160 61.2
GSVIVG01018418001 Vitis vinifera HOM05D005798 ORTHO05D007269 4.3e-50 203.0 150 67.3
Atru.chr5.133 Acer truncatum HOM05D005798 ORTHO05D007269 7.2e-45 185.7 145 62.1
Dinv43574 Davidia involucrata HOM05D005798 ORTHO05D007269 1.8e-43 181.0 109 74.3
Nn1g07357 Nelumbo nucifera HOM05D005798 ORTHO05D007269 5.1e-43 179.5 135 58.5
CBR_g39622 Chara braunii HOM05D000017 ORTHO05D000013 2.4e-40 170.6 426 30.0
HanXRQChr12g0366931 Helianthus annuus HOM05D005798 ORTHO05D007269 7.7e-39 165.6 244 38.9
Cre16.g684155 Chlamydomonas reinhardtii HOM05D005798 ORTHO05D007269 8.5e-38 162.2 349 30.1
CAN.G195.32 Capsicum annuum HOM05D005798 ORTHO05D007269 1.9e-37 161.0 166 48.2
CAN.G74.39 Capsicum annuum HOM05D005798 ORTHO05D007269 3.6e-36 156.8 136 59.6
Atru.chr5.134 Acer truncatum HOM05D005798 ORTHO05D007269 1.4e-35 154.8 93 73.1
PRCOL_00005399 Prasinoderma coloniale HOM05D005798 ORTHO05D007269 1.3e-30 138.3 370 27.8
Nn3g19415 Nelumbo nucifera HOM05D005798 ORTHO05D007269 1.0e-27 128.6 92 68.5
CAN.G74.38 Capsicum annuum HOM05D005798 ORTHO05D007269 2.3e-27 127.5 93 68.8
MCO12G177 Micromonas commoda HOM05D005798 ORTHO05D007269 1.6e-20 104.8 459 23.7
EL10Ac6g13432 Beta vulgaris HOM05D005798 ORTHO05D007269 3.6e-20 103.6 85 55.3
HanXRQChr07g0198081 Helianthus annuus HOM05D005798 ORTHO05D007269 1.8e-19 101.3 221 32.6
HPP92_011700 Vanilla planifolia HOM05D005798 ORTHO05D007269 3.3e-18 97.1 226 30.1
TAR375G0441 Trochodendron aralioides HOM05D005798 ORTHO05D007269 1.1e-13 82.0 54 70.4
MBI14_g08084_MAGBIO Magnolia biondii HOM05D005798 ORTHO05D007269 8.0e-12 75.9 85 47.1
HanXRQChr11g0349311 Helianthus annuus HOM05D000428 ORTHO05D011602 8.8e-11 72.4 105 43.8
CAN.G195.33 Capsicum annuum HOM05D005798 ORTHO05D007269 2.9e-06 57.4 72 44.4


User provided reference genes

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