Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN28G0031 Fragaria x ananassa HOM05D005541 ORTHO05D006875 3.5e-166 588.2 293 100.0
FvH4_1g02000 Fragaria vesca HOM05D005541 ORTHO05D006875 2.6e-161 572.0 293 96.6
FAN26G0160 Fragaria x ananassa HOM05D005541 ORTHO05D006875 1.2e-158 563.1 296 95.6
RcHm_v2.0_Chr2g0087061 Rosa chinensis HOM05D005541 ORTHO05D006875 1.1e-148 530.0 289 89.3
MD15G1162200 Malus domestica HOM05D005541 ORTHO05D006875 1.0e-125 453.8 293 76.8
Prupe.7G257600 Prunus persica HOM05D005541 ORTHO05D006875 2.3e-125 452.6 299 77.6
Thecc.09G137600 Theobroma cacao HOM05D005541 ORTHO05D006875 7.7e-121 437.6 296 72.0
Ciclev10009016m.g Citrus clementina HOM05D005541 ORTHO05D006875 1.7e-120 436.4 291 71.5
TWI32G1342 Tripterygium wilfordii HOM05D005541 ORTHO05D006875 2.2e-120 436.0 281 74.0
Dinv36447 Davidia involucrata HOM05D005541 ORTHO05D006875 2.9e-120 435.6 300 71.0
MD02G1018200 Malus domestica HOM05D005541 ORTHO05D006875 2.9e-120 435.6 293 74.4
Cc06_g07640 Coffea canephora HOM05D005541 ORTHO05D006875 5.0e-120 434.9 279 73.5
CiPaw.04G177400 Carya illinoinensis HOM05D005541 ORTHO05D006875 8.5e-120 434.1 287 73.9
QL02p090804 Quercus lobata HOM05D005541 ORTHO05D006875 1.4e-119 433.3 295 72.9
Cfa002261 Carpinus fangiana HOM05D005541 ORTHO05D006875 2.7e-118 429.1 284 72.9
PGR142G4414 Punica granatum HOM05D005541 ORTHO05D006875 3.6e-118 428.7 291 71.5
Manes.14G119600 Manihot esculenta HOM05D005541 ORTHO05D006875 4.7e-118 428.3 293 72.4
GSVIVG01012859001 Vitis vinifera HOM05D005541 ORTHO05D006875 6.1e-118 427.9 283 71.7
arahy.Tifrunner.gnm1.ann1.9T6TW9 Arachis hypogaea HOM05D005541 ORTHO05D006875 3.0e-117 425.6 288 71.5
arahy.Tifrunner.gnm1.ann1.H1LUDS Arachis hypogaea HOM05D005541 ORTHO05D006875 5.2e-117 424.9 288 71.5
Lj6g0025347 Lotus japonicus HOM05D005541 ORTHO05D006875 1.5e-116 423.3 288 70.1
Potri.006G061600 Populus trichocarpa HOM05D005541 ORTHO05D006875 2.0e-116 422.9 294 69.4
TWI63G1467 Tripterygium wilfordii HOM05D005541 ORTHO05D006875 2.6e-116 422.5 294 72.1
vmacro06115 Vaccinium macrocarpon HOM05D005541 ORTHO05D006875 3.3e-116 422.2 255 74.9
Actinidia14228 Actinidia chinensis HOM05D005541 ORTHO05D006875 7.4e-116 421.0 260 76.9
HanXRQChr03g0063361 Helianthus annuus HOM05D005541 ORTHO05D006875 9.7e-116 420.6 289 71.6
TWI63G0008 Tripterygium wilfordii HOM05D005541 ORTHO05D006875 9.7e-116 420.6 294 71.8
ClCG06G011880 Citrullus lanatus HOM05D005541 ORTHO05D006875 1.7e-115 419.9 293 70.3
Gohir.A13G202000 Gossypium hirsutum HOM05D005541 ORTHO05D006875 2.2e-115 419.5 273 72.9
Gohir.D13G207800 Gossypium hirsutum HOM05D005541 ORTHO05D006875 2.2e-115 419.5 270 73.7
Duzib168G0734 Durio zibethinus HOM05D005541 ORTHO05D006875 6.3e-115 417.9 294 68.7
Gorai.013G236700 Gossypium raimondii HOM05D005541 ORTHO05D006875 6.3e-115 417.9 270 73.3
Rhsim03G0253300 Rhododendron simsii HOM05D005541 ORTHO05D006875 1.1e-114 417.2 293 69.6
Atru.chr7.2014 Acer truncatum HOM05D005541 ORTHO05D006875 1.8e-114 416.4 294 69.4
Potri.018G118200 Populus trichocarpa HOM05D005541 ORTHO05D006875 1.8e-114 416.4 296 69.3
Cpa.g.sc46.69 Carica papaya HOM05D005541 ORTHO05D006875 2.4e-114 416.0 286 70.6
Sed0021107 Sechium edule HOM05D005541 ORTHO05D006875 3.1e-114 415.6 293 69.3
Gorai.004G109500 Gossypium raimondii HOM05D005541 ORTHO05D006875 4.1e-114 415.2 287 70.7
Medtr2g450740 Medicago truncatula HOM05D005541 ORTHO05D006875 4.1e-114 415.2 294 68.7
Sabra06G0044200 Salix brachista HOM05D005541 ORTHO05D006875 5.3e-114 414.8 291 69.1
FAN19G0623 Fragaria x ananassa HOM05D005541 ORTHO05D006875 2.0e-113 412.9 207 98.1
Lalb_Chr08g0233581 Lupinus albus HOM05D005541 ORTHO05D006875 2.6e-113 412.5 290 70.3
Glyma.15G198100 Glycine max HOM05D005541 ORTHO05D006875 3.5e-113 412.1 276 71.0
Ca_03100_v3 Cicer arietinum L. HOM05D005541 ORTHO05D006875 4.5e-113 411.8 293 69.3
HanXRQChr09g0241861 Helianthus annuus HOM05D005541 ORTHO05D006875 1.0e-112 410.6 289 69.6
ECA240G1064 Erigeron canadensis HOM05D005541 ORTHO05D006875 1.3e-112 410.2 287 70.0
CANSAT11G2438 Cannabis sativa HOM05D005541 ORTHO05D006875 2.2e-112 409.5 291 68.7
Peaxi162Scf00088g00520 Petunia axillaris HOM05D005541 ORTHO05D006875 2.2e-112 409.5 267 70.4
Actinidia26358 Actinidia chinensis HOM05D005541 ORTHO05D006875 3.8e-112 408.7 263 74.1
Lsat_1_v5_gn_7_46800 Lactuca sativa HOM05D005541 ORTHO05D006875 3.8e-112 408.7 285 69.5
Solyc07g007380.4 Solanum lycopersicum HOM05D005541 ORTHO05D006875 3.8e-112 408.7 269 69.5
Sopen07g003450 Solanum pennellii HOM05D005541 ORTHO05D006875 5.0e-112 408.3 269 69.5
Migut.J01236 Erythranthe guttata HOM05D005541 ORTHO05D006875 6.5e-112 407.9 278 69.8
Aqoxy7G03592 Aquilegia oxysepala HOM05D005541 ORTHO05D006875 8.5e-112 407.5 265 70.6
MELO3C010277.2 Cucumis melo HOM05D005541 ORTHO05D006875 8.5e-112 407.5 295 69.2
Gohir.A08G090600 Gossypium hirsutum HOM05D005541 ORTHO05D006875 1.1e-111 407.1 288 69.4
Glyma.09G091600 Glycine max HOM05D005541 ORTHO05D006875 3.2e-111 405.6 285 69.5
Nitab4.5_0002845g0020 Nicotiana tabacum HOM05D005541 ORTHO05D006875 3.2e-111 405.6 285 66.3
CsaV3_1G028340 Cucumis sativus L. HOM05D005541 ORTHO05D006875 4.2e-111 405.2 295 69.2
Psat1g021320 Pisum sativum HOM05D005541 ORTHO05D006875 4.2e-111 405.2 296 67.9
Lalb_Chr11g0073101 Lupinus albus HOM05D005541 ORTHO05D006875 5.5e-111 404.8 290 69.0
VMungo1309G2820 Vigna mungo HOM05D005541 ORTHO05D006875 7.2e-111 404.4 265 70.6
Phvul.009G212200 Phaseolus vulgaris HOM05D005541 ORTHO05D006875 8.0e-110 401.0 299 65.2
PGSC0003DMG400030689 Solanum tuberosum HOM05D005541 ORTHO05D006875 5.2e-109 398.3 278 67.6
TAR100G0002 Trochodendron aralioides HOM05D005541 ORTHO05D006875 5.2e-109 398.3 280 67.5
TAR170G0003 Trochodendron aralioides HOM05D005541 ORTHO05D006875 5.2e-109 398.3 280 67.5
CAN.G1281.6 Capsicum annuum HOM05D005541 ORTHO05D006875 6.7e-109 397.9 267 69.3
Nitab4.5_0002286g0050 Nicotiana tabacum HOM05D005541 ORTHO05D006875 6.7e-109 397.9 285 66.0
Sed0001591 Sechium edule HOM05D005541 ORTHO05D006875 1.5e-108 396.7 287 67.6
SGA_v2.0_scaffold45G17077 Striga asiatica HOM05D005541 ORTHO05D006875 7.5e-108 394.4 284 67.6
Oeu012222.1 Olea europaea HOM05D005541 ORTHO05D006875 2.8e-107 392.5 283 65.4
Duzib187G1717 Durio zibethinus HOM05D005541 ORTHO05D006875 5.3e-106 388.3 238 76.1
Nn8g39653 Nelumbo nucifera HOM05D005541 ORTHO05D006875 9.1e-106 387.5 283 68.6
DCAR_009345 Daucus carota HOM05D005541 ORTHO05D006875 4.5e-105 385.2 281 69.0
AUR62020012 Chenopodium quinoa HOM05D005541 ORTHO05D006875 2.9e-104 382.5 269 66.9
MSTRG.6077 Avicennia marina HOM05D005541 ORTHO05D006875 6.5e-104 381.3 268 69.4
AUR62011221 Chenopodium quinoa HOM05D005541 ORTHO05D006875 6.5e-104 381.3 294 62.2
Lj7A439T20 Lonicera japonica HOM05D005541 ORTHO05D006875 1.1e-103 380.6 234 75.6
Dinv41444 Davidia involucrata HOM05D005541 ORTHO05D006875 3.2e-103 379.0 224 76.8
Sc08g0006020 Simmondsia chinensis HOM05D005541 ORTHO05D006875 4.2e-103 378.6 280 64.6
Gohir.D08G101500 Gossypium hirsutum HOM05D005541 ORTHO05D006875 5.4e-98 361.7 288 64.9
Hund09308 Selenicereus undatus HOM05D005541 ORTHO05D006875 3.5e-97 359.0 295 59.7
Gohir.D13G208000 Gossypium hirsutum HOM05D005541 ORTHO05D006875 1.0e-96 357.5 232 73.3
COL.COLO4_33365 Corchorus olitorius HOM05D005541 ORTHO05D006875 2.5e-95 352.8 216 76.9
Haze_25444 Corylus avellana HOM05D005541 ORTHO05D006875 3.3e-95 352.4 295 63.7
CSS0024399 Camellia sinensis var. sinensis HOM05D005541 ORTHO05D006875 2.1e-94 349.7 228 72.8
ATR0767G116 Amborella trichopoda HOM05D005541 ORTHO05D006875 1.8e-93 346.7 267 64.0
Eucgr.C00480 Eucalyptus grandis HOM05D005541 ORTHO05D006875 4.0e-93 345.5 289 61.6
THA.LOC104808948 Tarenaya hassleriana HOM05D005541 ORTHO05D006875 1.2e-92 344.0 284 57.7
HPP92_020539 Vanilla planifolia HOM05D005541 ORTHO05D006875 4.4e-92 342.0 277 57.4
Ah.09g224130 Amaranthus hybridus HOM05D005541 ORTHO05D006875 5.7e-92 341.7 224 69.2
MBI15_g25760_MAGBIO Magnolia biondii HOM05D005541 ORTHO05D006875 5.7e-92 341.7 380 48.4
THA.LOC104815290 Tarenaya hassleriana HOM05D005541 ORTHO05D006875 1.7e-91 340.1 291 56.4
CDE02G2611 Ceratophyllum demersum HOM05D005541 ORTHO05D006875 3.1e-90 335.9 268 59.0
PSO478G5201 Papaver somniferum HOM05D005541 ORTHO05D006875 1.2e-89 334.0 257 62.3
PSO017G3833 Papaver somniferum HOM05D005541 ORTHO05D006875 1.0e-88 330.9 257 62.6
EL10Ac8g18781 Beta vulgaris HOM05D005541 ORTHO05D006875 3.9e-88 328.9 216 68.1
AT5G35080 Arabidopsis thaliana HOM05D005541 ORTHO05D006875 3.1e-85 319.3 285 56.1
BcaB02g10581 Brassica carinata HOM05D005541 ORTHO05D006875 5.8e-84 315.1 281 54.4
BraA05t20138Z Brassica rapa HOM05D005541 ORTHO05D006875 8.3e-83 311.2 269 56.5
A05p11950 Brassica napus HOM05D005541 ORTHO05D006875 1.9e-82 310.1 269 56.5
BcaC02g11442 Brassica carinata HOM05D005541 ORTHO05D006875 4.1e-82 308.9 285 54.4
C04p15500 Brassica napus HOM05D005541 ORTHO05D006875 4.1e-82 308.9 285 54.4
BolC4t23121H Brassica oleracea HOM05D005541 ORTHO05D006875 4.1e-82 308.9 285 54.4
BcaB01g03929 Brassica carinata HOM05D005541 ORTHO05D006875 7.0e-82 308.1 260 56.9
Sp4g15930 Schrenkiella parvula HOM05D005541 ORTHO05D006875 2.7e-81 306.2 272 55.1
Carub.0007s3085 Capsella rubella HOM05D005541 ORTHO05D006875 2.3e-80 303.1 280 54.6
Thhalv10002066m.g Eutrema salsugineum HOM05D005541 ORTHO05D006875 3.0e-80 302.8 273 54.6
Actinidia38706 Actinidia chinensis HOM05D005541 ORTHO05D006875 5.0e-80 302.0 200 71.5
Aa31LG10G11810 Aethionema arabicum HOM05D005541 ORTHO05D006875 1.9e-79 300.1 247 59.9
C03p21960 Brassica napus HOM05D005541 ORTHO05D006875 9.5e-79 297.7 278 53.2
BolC3t14579H Brassica oleracea HOM05D005541 ORTHO05D006875 1.2e-78 297.4 292 51.7
Zm00001eb028460 Zea mays HOM05D005541 ORTHO05D006875 2.2e-75 286.6 262 53.4
Oeu028018.1 Olea europaea HOM05D005541 ORTHO05D006875 1.9e-74 283.5 257 56.8
CARHR217140 Cardamine hirsuta HOM05D005541 ORTHO05D006875 4.3e-71 272.3 233 55.4
Pp3c2_6810 Physcomitrium patens HOM05D005541 ORTHO05D006875 7.3e-71 271.6 252 54.0
BcaC01g05834 Brassica carinata HOM05D005541 ORTHO05D006875 6.4e-67 258.5 233 53.6
Pp3c1_27810 Physcomitrium patens HOM05D005541 ORTHO05D006875 2.4e-66 256.5 259 52.1
Zm00001eb136970 Zea mays HOM05D005541 ORTHO05D006875 1.8e-61 240.4 209 57.4
Mapoly0020s0022 Marchantia polymorpha HOM05D005541 ORTHO05D006875 2.9e-59 233.0 268 49.3
SMO174G0227 Selaginella moellendorffii HOM05D005541 ORTHO05D006875 5.1e-56 222.2 240 47.5
unitig_0.g507 Utricularia gibba HOM05D005541 ORTHO05D006875 9.0e-53 211.5 162 62.3
Oeu028135.2 Olea europaea HOM05D005541 ORTHO05D006875 1.7e-51 207.2 181 61.9
AagrBONN_evm.TU.Sc2ySwM_228.2742 Anthoceros agrestis HOM05D005541 ORTHO05D006875 6.4e-51 205.3 264 42.8
SEGI_36543 Sequoiadendron giganteum HOM05D005541 ORTHO05D006875 6.0e-41 172.2 146 56.8
CBR_g45403 Chara braunii HOM05D005541 ORTHO05D006875 2.2e-35 153.7 255 34.5
Os06g0644800 Oryza sativa ssp. japonica HOM05D005541 ORTHO05D006875 1.6e-33 147.5 119 56.3
Ca_27153_v3 Cicer arietinum L. HOM05D005541 ORTHO05D006875 6.7e-32 142.1 111 66.7
RcHm_v2.0_Chr1g0314561 Rosa chinensis HOM05D005541 ORTHO05D006875 3.8e-27 126.3 77 79.2
MCO11G854 Micromonas commoda HOM05D005541 ORTHO05D006875 4.2e-26 122.9 218 32.1
RcHm_v2.0_Chr5g0069501 Rosa chinensis HOM05D005541 ORTHO05D006875 2.2e-22 110.5 60 83.3
FvH4_1g02060 Fragaria vesca HOM05D005541 ORTHO05D006875 1.5e-20 104.4 93 64.5
Cre06.g257900 Chlamydomonas reinhardtii HOM05D005541 ORTHO05D006875 5.0e-19 99.4 174 36.2
Ca_24194_v3 Cicer arietinum L. HOM05D000002 ORTHO05D000001 6.5e-19 99.0 107 52.3
PRCOL_00001292 Prasinoderma coloniale HOM05D005541 ORTHO05D006875 1.6e-17 94.4 142 36.6
HanXRQChr03g0068961 Helianthus annuus HOM05D005541 ORTHO05D006875 3.3e-15 86.7 49 85.7
RcHm_v2.0_Chr7g0241391 Rosa chinensis HOM05D005541 ORTHO05D006875 4.3e-15 86.3 43 88.4
unitig_0.g506 Utricularia gibba HOM05D001054 ORTHO05D007110 1.5e-12 77.8 82 50.0
Cfa024351 Carpinus fangiana HOM05D005541 ORTHO05D124727 4.8e-06 56.2 221 25.3


User provided reference genes

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