Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN28G0021 Fragaria x ananassa HOM05D005593 ORTHO05D006515 0.0e+00 1611.7 891 100.0
FAN19G1075 Fragaria x ananassa HOM05D005593 ORTHO05D006515 0.0e+00 1528.1 891 92.7
FAN23G2457 Fragaria x ananassa HOM05D005593 ORTHO05D006515 0.0e+00 1515.0 889 92.1
FAN26G1119 Fragaria x ananassa HOM05D005593 ORTHO05D006515 0.0e+00 1422.1 847 91.5
RcHm_v2.0_Chr2g0090061 Rosa chinensis HOM05D005593 ORTHO05D006515 0.0e+00 1194.9 847 78.3
Prupe.7G233100 Prunus persica HOM05D005593 ORTHO05D006515 3.1e-221 772.7 867 56.4
MD15G1182400 Malus domestica HOM05D005593 ORTHO05D006515 2.1e-185 653.7 829 51.4
CiPaw.04G162900 Carya illinoinensis HOM05D005593 ORTHO05D006515 2.4e-141 507.3 863 41.9
Dinv36648 Davidia involucrata HOM05D005593 ORTHO05D006515 7.5e-135 485.7 885 40.8
Dinv41619 Davidia involucrata HOM05D005593 ORTHO05D006515 4.1e-133 479.9 885 41.1
Cfa003241 Carpinus fangiana HOM05D005593 ORTHO05D006515 1.2e-132 478.4 871 42.1
QL02p044157 Quercus lobata HOM05D005593 ORTHO05D006515 1.3e-131 474.9 863 42.4
QL02p043456 Quercus lobata HOM05D005593 ORTHO05D006515 2.3e-128 464.2 827 43.0
CiPaw.03G229900 Carya illinoinensis HOM05D005593 ORTHO05D006515 1.4e-125 454.9 985 37.9
Thecc.09G108000 Theobroma cacao HOM05D005593 ORTHO05D006515 1.1e-122 445.3 871 40.0
Haze_25764 Corylus avellana HOM05D005593 ORTHO05D006515 1.0e-120 438.7 880 40.1
Ciclev10007444m.g Citrus clementina HOM05D005593 ORTHO05D006515 4.6e-116 423.3 868 38.1
Cpa.g.sc23.90 Carica papaya HOM05D005593 ORTHO05D006515 3.0e-115 420.6 919 38.1
CANSAT56G2752 Cannabis sativa HOM05D005593 ORTHO05D006515 2.8e-113 414.1 898 39.2
TAR383G0262 Trochodendron aralioides HOM05D005593 ORTHO05D006515 4.0e-112 410.2 907 37.7
Duzib150G1551 Durio zibethinus HOM05D005593 ORTHO05D006515 7.5e-111 406.0 902 38.2
Manes.16G114300 Manihot esculenta HOM05D005593 ORTHO05D006515 2.1e-108 397.9 902 36.9
Duzib187G0236 Durio zibethinus HOM05D005593 ORTHO05D006515 1.3e-107 395.2 933 36.8
CSS0003686 Camellia sinensis var. sinensis HOM05D005593 ORTHO05D006515 1.9e-101 374.8 986 34.2
GSVIVG01015371001 Vitis vinifera HOM05D005593 ORTHO05D006515 6.0e-100 369.8 697 40.5
Gohir.A06G063700 Gossypium hirsutum HOM05D005593 ORTHO05D006515 3.0e-99 367.5 921 34.4
Gorai.010G072700 Gossypium raimondii HOM05D005593 ORTHO05D006515 3.0e-99 367.5 919 35.8
Potri.018G082300 Populus trichocarpa HOM05D005593 ORTHO05D006515 5.6e-98 363.2 917 35.8
TWI63G0748 Tripterygium wilfordii HOM05D005593 ORTHO05D006515 7.3e-98 362.8 910 35.4
Gohir.D06G062400 Gossypium hirsutum HOM05D005593 ORTHO05D006515 1.6e-97 361.7 927 35.2
arahy.Tifrunner.gnm1.ann1.F0KYD5 Arachis hypogaea HOM05D005593 ORTHO05D006515 1.5e-95 355.1 895 34.9
Lalb_Chr14g0371581 Lupinus albus HOM05D005593 ORTHO05D006515 6.6e-91 339.7 872 35.4
Lj2g0010013 Lotus japonicus HOM05D005593 ORTHO05D006515 4.3e-90 337.0 871 34.6
Cc06_g09850 Coffea canephora HOM05D005593 ORTHO05D006515 7.3e-90 336.3 894 33.6
Manes.03G022200 Manihot esculenta HOM05D005593 ORTHO05D006515 2.1e-89 334.7 908 33.3
Sabra18G0070100 Salix brachista HOM05D005593 ORTHO05D006515 2.1e-89 334.7 886 36.2
Nitab4.5_0000097g0120 Nicotiana tabacum HOM05D005593 ORTHO05D006515 1.1e-88 332.4 978 33.0
Nn3g18070 Nelumbo nucifera HOM05D005593 ORTHO05D006515 1.5e-87 328.6 917 33.3
Psat1g043640 Pisum sativum HOM05D005593 ORTHO05D006515 9.9e-87 325.9 859 33.4
Glyma.07G084900 Glycine max HOM05D005593 ORTHO05D006515 8.4e-86 322.8 877 34.4
Nitab4.5_0013892g0010 Nicotiana tabacum HOM05D005593 ORTHO05D006515 8.4e-86 322.8 968 33.4
Glyma.09G192000 Glycine max HOM05D005593 ORTHO05D006515 1.9e-85 321.6 878 35.8
Medtr6g087760 Medicago truncatula HOM05D005593 ORTHO05D006515 3.2e-85 320.9 867 34.1
Peaxi162Scf00231g00216 Petunia axillaris HOM05D005593 ORTHO05D006515 9.3e-85 319.3 912 32.9
Rhsim01G0100000 Rhododendron simsii HOM05D005593 ORTHO05D006515 9.3e-85 319.3 1038 31.2
Lalb_Chr22g0352731 Lupinus albus HOM05D005593 ORTHO05D006515 7.9e-84 316.2 869 34.3
vmacro20713 Vaccinium macrocarpon HOM05D005593 ORTHO05D006515 7.9e-84 316.2 1039 30.7
Phvul.004G165100 Phaseolus vulgaris HOM05D005593 ORTHO05D006515 1.3e-83 315.5 878 33.6
Nn2g11698 Nelumbo nucifera HOM05D005593 ORTHO05D006515 3.9e-83 313.9 912 33.2
DCAR_012067 Daucus carota HOM05D005593 ORTHO05D006515 2.5e-82 311.2 909 32.7
CSS0038657 Camellia sinensis var. sinensis HOM05D005593 ORTHO05D006515 3.3e-82 310.8 988 31.7
VMungo0464G1894 Vigna mungo HOM05D005593 ORTHO05D006515 4.8e-81 307.0 885 33.6
Oeu064588.2 Olea europaea HOM05D005593 ORTHO05D006515 1.1e-80 305.8 900 33.2
TPR.G10037 Trifolium pratense HOM05D005593 ORTHO05D006515 7.1e-77 293.1 876 32.5
Gohir.D07G006300 Gossypium hirsutum HOM05D005593 ORTHO05D006515 1.6e-76 292.0 861 32.9
Peaxi162Scf00207g01317 Petunia axillaris HOM05D005593 ORTHO05D006515 3.5e-76 290.8 891 33.1
Gorai.001G005900 Gossypium raimondii HOM05D005593 ORTHO05D006515 6.7e-75 286.6 848 32.9
Ca_25537_v3 Cicer arietinum L. HOM05D005593 ORTHO05D006515 1.1e-74 285.8 856 32.7
Peaxi162Scf01363g00023 Petunia axillaris HOM05D005593 ORTHO05D006515 1.5e-74 285.4 887 30.8
TWI34G0806 Tripterygium wilfordii HOM05D005593 ORTHO05D006515 9.6e-74 282.7 561 40.8
Aqoxy7G01612 Aquilegia oxysepala HOM05D005593 ORTHO05D006515 3.1e-72 277.7 898 31.2
PGSC0003DMG400015636 Solanum tuberosum HOM05D005593 ORTHO05D006515 2.0e-71 275.0 956 31.1
PGR142G3553 Punica granatum HOM05D005593 ORTHO05D006515 5.8e-71 273.5 867 31.4
Sc08g0007580 Simmondsia chinensis HOM05D005593 ORTHO05D006515 7.6e-71 273.1 888 30.2
ClCG06G008720 Citrullus lanatus HOM05D005593 ORTHO05D006515 3.8e-70 270.8 857 32.2
PSO832G1383 Papaver somniferum HOM05D005593 ORTHO05D006515 4.9e-70 270.4 952 31.2
Actinidia20382 Actinidia chinensis HOM05D005593 ORTHO05D006515 4.2e-69 267.3 680 34.1
Sed0013092 Sechium edule HOM05D005593 ORTHO05D006515 4.2e-69 267.3 846 32.0
Nitab4.5_0009314g0010 Nicotiana tabacum HOM05D005593 ORTHO05D006515 3.5e-68 264.2 888 30.1
Phvul.002G312500 Phaseolus vulgaris HOM05D005593 ORTHO05D006515 4.6e-68 263.8 859 30.8
PSO782G3244 Papaver somniferum HOM05D005593 ORTHO05D006515 7.9e-68 263.1 962 30.6
MSTRG.19579 Avicennia marina HOM05D005593 ORTHO05D006515 6.7e-67 260.0 867 30.7
MELO3C024628.2 Cucumis melo HOM05D005593 ORTHO05D006515 1.5e-66 258.8 853 31.7
SalBow6G5362 Salvia bowleyana HOM05D005593 ORTHO05D006515 1.6e-65 255.4 849 31.4
Sopen07g016890 Solanum pennellii HOM05D005593 ORTHO05D006515 8.2e-65 253.1 919 29.7
Solyc07g032710.4 Solanum lycopersicum HOM05D005593 ORTHO05D006515 1.8e-64 251.9 917 30.6
Nitab4.5_0002904g0040 Nicotiana tabacum HOM05D005593 ORTHO05D006515 1.0e-62 246.1 754 32.5
Glyma.08G037800 Glycine max HOM05D005593 ORTHO05D006515 1.7e-62 245.4 848 31.4
VMungo0251G1265 Vigna mungo HOM05D005593 ORTHO05D006515 6.5e-62 243.4 861 30.2
PGSC0003DMG400000308 Solanum tuberosum HOM05D005593 ORTHO05D006515 1.1e-61 242.7 768 31.5
EL10Ac8g18455 Beta vulgaris HOM05D005593 ORTHO05D006515 2.5e-61 241.5 922 28.9
COL.COLO4_34842 Corchorus olitorius HOM05D005593 ORTHO05D006515 4.2e-61 240.7 599 34.4
Sopen12g003130 Solanum pennellii HOM05D005593 ORTHO05D006515 1.6e-60 238.8 863 29.3
CsaV3_1G024390 Cucumis sativus L. HOM05D005593 ORTHO05D006515 1.3e-57 229.2 841 30.9
Glyma.05G230300 Glycine max HOM05D005593 ORTHO05D006515 1.6e-57 228.8 842 30.0
Ah.14g082180 Amaranthus hybridus HOM05D005593 ORTHO05D006515 5.0e-54 217.2 878 28.9
AUR62010967 Chenopodium quinoa HOM05D005593 ORTHO05D006515 5.0e-54 217.2 918 27.7
Solyc12g007140.3 Solanum lycopersicum HOM05D005593 ORTHO05D006515 1.6e-52 212.2 738 29.7
AUR62021477 Chenopodium quinoa HOM05D005593 ORTHO05D006515 2.3e-51 208.4 911 28.1
ECA234G4430 Erigeron canadensis HOM05D005593 ORTHO05D006515 8.8e-51 206.5 873 28.5
HanXRQChr12g0355541 Helianthus annuus HOM05D000246 ORTHO05D008363 1.3e-49 202.6 853 28.1
ClCG11G002410 Citrullus lanatus HOM05D005593 ORTHO05D006515 1.1e-48 199.5 906 29.6
Lsat_1_v5_gn_5_103481 Lactuca sativa HOM05D005593 ORTHO05D006515 4.1e-48 197.6 863 27.8
MBI04_g19171_MAGBIO Magnolia biondii HOM05D005593 ORTHO05D006515 5.9e-47 193.7 1078 25.0
Hund09124 Selenicereus undatus HOM05D005593 ORTHO05D006515 3.2e-45 188.0 901 26.0
Dinv11466 Davidia involucrata HOM05D005593 ORTHO05D006515 1.0e-43 183.0 309 46.3
CsaV3_2G002210 Cucumis sativus L. HOM05D005593 ORTHO05D006515 5.7e-42 177.2 544 33.5
Sed0018005 Sechium edule HOM05D005593 ORTHO05D006515 1.1e-40 172.9 545 31.4
Gohir.A07G005700 Gossypium hirsutum HOM05D005593 ORTHO05D006515 2.4e-40 171.8 591 29.8
arahy.Tifrunner.gnm1.ann1.31F9U3 Arachis hypogaea HOM05D005593 ORTHO05D006515 1.2e-39 169.5 491 33.0
Hund09560 Selenicereus undatus HOM05D005593 ORTHO05D006515 1.6e-39 169.1 935 26.1
Ah.09g231030 Amaranthus hybridus HOM05D005593 ORTHO05D006515 3.5e-39 167.9 878 28.0
MELO3C004562.2 Cucumis melo HOM05D005593 ORTHO05D006515 1.7e-38 165.6 864 28.5
THA.LOC104804597 Tarenaya hassleriana HOM05D005593 ORTHO05D006515 2.2e-38 165.2 861 29.0
A07p07590 Brassica napus HOM05D005593 ORTHO05D006515 2.9e-38 164.9 853 27.9
BraA07t28551Z Brassica rapa HOM05D005593 ORTHO05D006515 3.8e-38 164.5 852 27.9
Carub.0003s2504 Capsella rubella HOM05D005593 ORTHO05D006515 1.2e-36 159.5 850 27.1
AT3G24630 Arabidopsis thaliana HOM05D005593 ORTHO05D006515 1.6e-36 159.1 852 28.3
DCAR_028703 Daucus carota HOM05D005593 ORTHO05D006515 2.7e-36 158.3 746 28.0
BcaC06g35744 Brassica carinata HOM05D005593 ORTHO05D006515 1.0e-35 156.4 854 29.5
C07p11350 Brassica napus HOM05D005593 ORTHO05D006515 1.8e-35 155.6 854 29.6
BcaB06g26676 Brassica carinata HOM05D005593 ORTHO05D006515 6.7e-35 153.7 859 25.4
BolC7t41613H Brassica oleracea HOM05D005593 ORTHO05D006515 4.4e-34 151.0 854 29.4
Sp3g22410 Schrenkiella parvula HOM05D005593 ORTHO05D006515 2.8e-33 148.3 856 29.8
AL3G40252 Arabidopsis lyrata HOM05D005593 ORTHO05D006515 3.7e-33 147.9 849 27.3
CARHR100960 Cardamine hirsuta HOM05D005593 ORTHO05D006515 8.2e-33 146.7 852 25.8
Lj7E653T1 Lonicera japonica HOM05D005593 ORTHO05D006515 3.5e-31 141.4 164 56.7
Thhalv10002425m.g Eutrema salsugineum HOM05D005593 ORTHO05D006515 2.2e-30 138.7 845 26.6
Sed0026051 Sechium edule HOM05D005593 ORTHO05D006515 3.8e-30 137.9 581 28.6
Aa31sc586G30 Aethionema arabicum HOM05D005593 ORTHO05D006515 6.5e-30 137.1 863 26.5
Rhsim01G0099800 Rhododendron simsii HOM05D005593 ORTHO05D006515 9.4e-29 133.3 352 37.2
Rhsim01G0099500 Rhododendron simsii HOM05D005593 ORTHO05D006515 2.1e-28 132.1 207 36.7
Eucgr.C01030 Eucalyptus grandis HOM05D005593 ORTHO05D006515 2.3e-27 128.6 177 38.4
TWI34G0072 Tripterygium wilfordii HOM05D005593 ORTHO05D006515 2.0e-26 125.6 211 34.6
Rhsim01G0098000 Rhododendron simsii HOM05D005593 ORTHO05D006515 9.1e-24 116.7 265 39.6
BolC7t41614H Brassica oleracea HOM05D005593 ORTHO05D006515 2.7e-23 115.2 313 35.1
CSS0008305 Camellia sinensis var. sinensis HOM05D005593 ORTHO05D006515 3.2e-21 108.2 222 34.2
HPP92_023948 Vanilla planifolia HOM05D005593 ORTHO05D006515 3.4e-18 98.2 762 23.4
THA.LOC104813209 Tarenaya hassleriana HOM05D006788 ORTHO05D008265 1.3e-14 86.3 269 28.6
ATR0315G161 Amborella trichopoda HOM05D005593 ORTHO05D006515 6.6e-14 84.0 1002 22.2
HPP92_023915 Vanilla planifolia HOM05D005593 ORTHO05D006515 2.5e-13 82.0 283 30.7
Os01g0228800 Oryza sativa ssp. japonica HOM05D042755 ORTHO05D006515 3.6e-12 78.2 739 22.5
HPP92_010043 Vanilla planifolia HOM05D005593 ORTHO05D006515 8.0e-12 77.0 216 28.2
Cfa005599 Carpinus fangiana HOM05D005593 ORTHO05D006515 1.5e-10 72.8 57 73.7
Migut.N00496 Erythranthe guttata HOM05D006788 ORTHO05D008265 2.0e-10 72.4 826 23.4
MD08G1035200 Malus domestica HOM05D006788 ORTHO05D008265 3.7e-09 68.2 858 22.8
AL8G18450 Arabidopsis lyrata HOM05D006788 ORTHO05D008265 4.9e-09 67.8 837 22.1
Lalb_Chr16g0388151 Lupinus albus HOM05D005593 ORTHO05D006515 6.4e-09 67.4 183 29.5
Zm00001eb339200 Zea mays HOM05D042755 ORTHO05D006515 1.8e-08 65.9 752 25.3
CsaV3_3G045060 Cucumis sativus L. HOM05D006788 ORTHO05D008265 2.7e-07 62.0 175 29.1
SGA_v2.0_scaffold326G48711 Striga asiatica HOM05D006788 ORTHO05D008265 2.7e-07 62.0 860 22.2
MELO3C003844.2 Cucumis melo HOM05D006788 ORTHO05D008265 3.5e-07 61.6 175 29.7
HPP92_023926 Vanilla planifolia HOM05D005593 ORTHO05D006515 3.5e-07 61.6 121 38.0
Hma1.2p1_0203F.1_g086400 Hydrangea macrophylla HOM05D006788 ORTHO05D008265 7.8e-07 60.5 879 22.2
CDE02G1606 Ceratophyllum demersum HOM05D005593 ORTHO05D006515 3.9e-06 58.2 225 22.7
COL.COLO4_26325 Corchorus olitorius HOM05D006788 ORTHO05D008265 3.9e-06 58.2 983 22.5
Carub.0008s0625 Capsella rubella HOM05D006788 ORTHO05D008265 5.0e-06 57.8 840 21.9


User provided reference genes

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