Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN27G3490 Fragaria x ananassa HOM05D004388 ORTHO05D005106 1.6e-59 232.6 126 100.0
FvH4_2g07330 Fragaria vesca HOM05D004388 ORTHO05D005106 2.0e-57 225.7 126 97.6
FAN24G3543 Fragaria x ananassa HOM05D004388 ORTHO05D005106 2.0e-57 225.7 126 97.6
FAN15G0910 Fragaria x ananassa HOM05D004388 ORTHO05D005106 5.7e-57 224.2 126 96.8
FAN03G2535 Fragaria x ananassa HOM05D004388 ORTHO05D005106 9.8e-57 223.4 126 96.0
FAN06G4461 Fragaria x ananassa HOM05D004388 ORTHO05D005106 8.3e-56 220.3 126 94.4
FvH4_7g04430 Fragaria vesca HOM05D004388 ORTHO05D005106 1.1e-55 219.9 126 94.4
FAN06G3575 Fragaria x ananassa HOM05D004388 ORTHO05D005106 1.1e-55 219.9 126 94.4
FAN10G0172 Fragaria x ananassa HOM05D004388 ORTHO05D005106 3.5e-54 214.9 126 92.9
RcHm_v2.0_Chr3g0487591 Rosa chinensis HOM05D004388 ORTHO05D005106 1.5e-52 209.5 126 88.9
FvH4_1g27200 Fragaria vesca HOM05D004388 ORTHO05D005106 4.0e-50 201.4 126 86.5
FAN26G1198 Fragaria x ananassa HOM05D004388 ORTHO05D005106 8.9e-50 200.3 126 85.7
FAN28G0470 Fragaria x ananassa HOM05D004388 ORTHO05D005106 8.9e-50 200.3 126 85.7
FAN19G2330 Fragaria x ananassa HOM05D004388 ORTHO05D005106 1.5e-49 199.5 126 85.7
FAN28G0922 Fragaria x ananassa HOM05D004388 ORTHO05D005106 7.5e-49 197.2 126 84.9
FAN23G2994 Fragaria x ananassa HOM05D004388 ORTHO05D005106 2.2e-48 195.7 126 84.1
Prupe.8G112900 Prunus persica HOM05D004388 ORTHO05D005106 2.5e-44 182.2 126 85.7
FAN20G1062 Fragaria x ananassa HOM05D004388 ORTHO05D005106 2.9e-40 168.7 103 89.3
MD05G1072400 Malus domestica HOM05D004388 ORTHO05D005106 9.2e-39 163.7 127 76.4
QL03p018404 Quercus lobata HOM05D004388 ORTHO05D005106 3.5e-38 161.8 119 74.8
QL11p039202 Quercus lobata HOM05D004388 ORTHO05D005106 4.6e-38 161.4 119 74.8
Sabra09G0082900 Salix brachista HOM05D004388 ORTHO05D005106 1.3e-37 159.8 123 76.4
ClCG02G005540 Citrullus lanatus HOM05D004388 ORTHO05D005106 1.7e-37 159.5 124 73.4
TAR376G0986 Trochodendron aralioides HOM05D004388 ORTHO05D005106 3.9e-37 158.3 126 72.2
Potri.009G108700 Populus trichocarpa HOM05D004388 ORTHO05D005106 1.5e-36 156.4 121 72.7
CiPaw.05G058500 Carya illinoinensis HOM05D004388 ORTHO05D005106 1.9e-36 156.0 118 70.3
Thecc.02G028000 Theobroma cacao HOM05D004388 ORTHO05D005106 3.3e-36 155.2 123 73.2
Cfa004944 Carpinus fangiana HOM05D004388 ORTHO05D005106 4.3e-36 154.8 121 71.9
MELO3C018419.2 Cucumis melo HOM05D004388 ORTHO05D005106 4.3e-36 154.8 124 71.0
Duzib052G1120 Durio zibethinus HOM05D004388 ORTHO05D005106 9.5e-36 153.7 123 69.1
Nn6g32144 Nelumbo nucifera HOM05D004388 ORTHO05D005106 2.1e-35 152.5 127 69.3
CsaV3_7G010090 Cucumis sativus L. HOM05D004388 ORTHO05D005106 2.8e-35 152.1 124 70.2
Manes.15G145400 Manihot esculenta HOM05D004388 ORTHO05D005106 6.2e-35 151.0 125 70.4
CSS0016442 Camellia sinensis var. sinensis HOM05D004388 ORTHO05D005106 1.1e-34 150.2 128 70.3
Nn5g29406 Nelumbo nucifera HOM05D004388 ORTHO05D005106 1.1e-34 150.2 125 68.8
Gorai.002G214600 Gossypium raimondii HOM05D004388 ORTHO05D005106 1.4e-34 149.8 121 70.2
Duzib132G0841 Durio zibethinus HOM05D004388 ORTHO05D005106 3.1e-34 148.7 124 66.9
Hma1.2p1_1527F.1_g289065 Hydrangea macrophylla HOM05D004388 ORTHO05D005106 3.1e-34 148.7 124 68.5
CSS0020304 Camellia sinensis var. sinensis HOM05D004388 ORTHO05D005106 4.0e-34 148.3 128 70.3
Ciclev10030439m.g Citrus clementina HOM05D004388 ORTHO05D005106 5.2e-34 147.9 124 67.7
Sed0011034 Sechium edule HOM05D004388 ORTHO05D005106 5.2e-34 147.9 124 70.2
Gohir.D01G173000 Gossypium hirsutum HOM05D004388 ORTHO05D005106 6.8e-34 147.5 121 69.4
Duzib248G0675 Durio zibethinus HOM05D004388 ORTHO05D005106 1.2e-33 146.7 119 69.7
ECA236G2461 Erigeron canadensis HOM05D004388 ORTHO05D005106 1.2e-33 146.7 124 70.2
Hma1.2p1_0584F.1_g183220 Hydrangea macrophylla HOM05D004388 ORTHO05D005106 1.2e-33 146.7 127 68.5
Glyma.07G163600 Glycine max HOM05D004388 ORTHO05D005106 2.0e-33 146.0 125 68.8
Gohir.D02G236000 Gossypium hirsutum HOM05D004388 ORTHO05D005106 4.4e-33 144.8 125 68.0
Potri.004G147300 Populus trichocarpa HOM05D004388 ORTHO05D005106 4.4e-33 144.8 123 67.5
Gohir.A01G181900 Gossypium hirsutum HOM05D004388 ORTHO05D005106 5.8e-33 144.4 121 67.8
CANSAT25G3863 Cannabis sativa HOM05D004388 ORTHO05D005106 9.9e-33 143.7 124 66.9
CSS0032006 Camellia sinensis var. sinensis HOM05D004388 ORTHO05D005106 1.3e-32 143.3 103 71.8
MD10G1086700 Malus domestica HOM05D004388 ORTHO05D005106 1.3e-32 143.3 112 74.1
Peaxi162Scf00684g00563 Petunia axillaris HOM05D004388 ORTHO05D005106 1.3e-32 143.3 126 68.3
Cc02_g18220 Coffea canephora HOM05D004388 ORTHO05D005106 1.7e-32 142.9 126 68.3
Gorai.005G264100 Gossypium raimondii HOM05D004388 ORTHO05D005106 1.7e-32 142.9 125 67.2
Oeu034076.1 Olea europaea HOM05D004388 ORTHO05D005106 1.7e-32 142.9 123 67.5
DCAR_001610 Daucus carota HOM05D004388 ORTHO05D005106 2.2e-32 142.5 123 69.9
HanXRQChr04g0128391 Helianthus annuus HOM05D004388 ORTHO05D005106 2.9e-32 142.1 120 67.5
Duzib248G0127 Durio zibethinus HOM05D004388 ORTHO05D005106 3.7e-32 141.7 124 66.1
Gohir.A03G214500 Gossypium hirsutum HOM05D004388 ORTHO05D005106 6.4e-32 141.0 125 67.2
Eucgr.G01518 Eucalyptus grandis HOM05D004388 ORTHO05D005106 1.1e-31 140.2 123 65.9
Lsat_1_v5_gn_7_88020 Lactuca sativa HOM05D004388 ORTHO05D005106 1.1e-31 140.2 123 67.5
Duzib248G1645 Durio zibethinus HOM05D004388 ORTHO05D005106 1.4e-31 139.8 123 64.2
Cfa018482 Carpinus fangiana HOM05D004388 ORTHO05D005106 1.9e-31 139.4 126 65.1
PGSC0003DMG400006208 Solanum tuberosum HOM05D004388 ORTHO05D005106 1.9e-31 139.4 125 71.2
COL.COLO4_17768 Corchorus olitorius HOM05D004388 ORTHO05D005106 4.1e-31 138.3 123 69.1
PSO541G0781 Papaver somniferum HOM05D004388 ORTHO05D005106 4.1e-31 138.3 123 65.9
AUR62040093 Chenopodium quinoa HOM05D004388 ORTHO05D005106 7.1e-31 137.5 123 64.2
Dinv36015 Davidia involucrata HOM05D004388 ORTHO05D005106 7.1e-31 137.5 125 64.8
Migut.B00292 Erythranthe guttata HOM05D004388 ORTHO05D005106 7.1e-31 137.5 120 65.0
TAR625G0696 Trochodendron aralioides HOM05D004388 ORTHO05D005106 7.1e-31 137.5 126 65.9
EL10Ac1g01755 Beta vulgaris HOM05D004388 ORTHO05D005106 1.2e-30 136.7 125 64.0
COL.COLO4_26416 Corchorus olitorius HOM05D004388 ORTHO05D005106 1.2e-30 136.7 126 62.7
Sopen10g022090 Solanum pennellii HOM05D004388 ORTHO05D005106 1.2e-30 136.7 124 67.7
AUR62033874 Chenopodium quinoa HOM05D004388 ORTHO05D005106 1.6e-30 136.3 126 64.3
HanXRQChr16g0506081 Helianthus annuus HOM05D004388 ORTHO05D005106 2.7e-30 135.6 123 65.9
MBI16_g31481_MAGBIO Magnolia biondii HOM05D004388 ORTHO05D005106 2.7e-30 135.6 124 62.9
GSVIVG01009587001 Vitis vinifera HOM05D004388 ORTHO05D005106 2.7e-30 135.6 126 65.1
CAN.G322.84 Capsicum annuum HOM05D004388 ORTHO05D005106 4.6e-30 134.8 126 68.3
Cpa.g.sc64.17 Carica papaya HOM05D004388 ORTHO05D005106 6.0e-30 134.4 125 64.8
Lalb_Chr01g0003011 Lupinus albus HOM05D004388 ORTHO05D005106 6.0e-30 134.4 105 67.6
Manes.05G168800 Manihot esculenta HOM05D004388 ORTHO05D005106 2.3e-29 132.5 124 59.7
Potri.014G037000 Populus trichocarpa HOM05D004388 ORTHO05D005106 3.0e-29 132.1 124 60.5
PSO170G0356 Papaver somniferum HOM05D004388 ORTHO05D005106 3.9e-29 131.7 124 62.1
Glyma.20G008600 Glycine max HOM05D004388 ORTHO05D005106 5.1e-29 131.3 126 61.1
TWI56G1138 Tripterygium wilfordii HOM05D004388 ORTHO05D005106 8.6e-29 130.6 125 63.2
Medtr1g034260 Medicago truncatula HOM05D004388 ORTHO05D005106 1.1e-28 130.2 129 64.3
Atru.BG.71.p Acer truncatum HOM05D004388 ORTHO05D005106 1.5e-28 129.8 93 78.5
Ca_12477_v3 Cicer arietinum L. HOM05D004388 ORTHO05D005106 1.5e-28 129.8 123 62.6
DCAR_000094 Daucus carota HOM05D004388 ORTHO05D005106 1.5e-28 129.8 122 61.5
DCAR_029046 Daucus carota HOM05D004388 ORTHO05D005106 1.5e-28 129.8 122 61.5
Sabra14G0026600 Salix brachista HOM05D004388 ORTHO05D005106 1.9e-28 129.4 124 59.7
CiPaw.16G051700 Carya illinoinensis HOM05D004388 ORTHO05D005106 2.5e-28 129.0 126 60.3
Peaxi162Scf00016g01338 Petunia axillaris HOM05D004388 ORTHO05D005106 2.5e-28 129.0 115 65.2
Ah.09g229630 Amaranthus hybridus HOM05D004388 ORTHO05D005106 5.6e-28 127.9 122 62.3
Nitab4.5_0001401g0180 Nicotiana tabacum HOM05D004388 ORTHO05D005106 5.6e-28 127.9 121 63.6
BcaB01g03018 Brassica carinata HOM05D004388 ORTHO05D005106 7.3e-28 127.5 126 64.3
PGR042G3241 Punica granatum HOM05D004388 ORTHO05D005106 9.6e-28 127.1 114 65.8
SalBow6G5992 Salvia bowleyana HOM05D004388 ORTHO05D005106 9.6e-28 127.1 124 63.7
VMungo1215G1405 Vigna mungo HOM05D004388 ORTHO05D005106 1.2e-27 126.7 123 59.3
MSTRG.20123 Avicennia marina HOM05D004388 ORTHO05D005106 1.6e-27 126.3 118 62.7
Sp4g07480 Schrenkiella parvula HOM05D004388 ORTHO05D005106 1.6e-27 126.3 129 64.3
Glyma.06G035900 Glycine max HOM05D004388 ORTHO05D005106 2.1e-27 125.9 124 59.7
Aqoxy6G00936 Aquilegia oxysepala HOM05D004388 ORTHO05D005106 2.8e-27 125.6 127 62.2
Lalb_Chr11g0062471 Lupinus albus HOM05D004388 ORTHO05D005106 2.8e-27 125.6 123 59.3
Nitab4.5_0008194g0060 Nicotiana tabacum HOM05D004388 ORTHO05D005106 2.8e-27 125.6 121 62.0
Phvul.003G011200 Phaseolus vulgaris HOM05D004388 ORTHO05D005106 4.7e-27 124.8 123 59.3
Lj1g0026402 Lotus japonicus HOM05D004388 ORTHO05D005106 8.1e-27 124.0 131 58.8
VMungo1309G1869 Vigna mungo HOM05D004388 ORTHO05D005106 1.4e-26 123.2 123 59.3
arahy.Tifrunner.gnm1.ann1.2I4SWN Arachis hypogaea HOM05D004388 ORTHO05D005106 1.8e-26 122.9 121 59.5
Phvul.009G061900 Phaseolus vulgaris HOM05D004388 ORTHO05D005106 1.8e-26 122.9 126 59.5
Thecc.08G017000 Theobroma cacao HOM05D004388 ORTHO05D005106 1.8e-26 122.9 132 56.8
Solyc01g109040.4 Solanum lycopersicum HOM05D004388 ORTHO05D005106 2.4e-26 122.5 125 63.2
Eucgr.I01216 Eucalyptus grandis HOM05D004388 ORTHO05D005106 3.1e-26 122.1 109 65.1
Thhalv10001257m.g Eutrema salsugineum HOM05D004388 ORTHO05D005106 5.2e-26 121.3 129 60.5
ATR0733G197 Amborella trichopoda HOM05D004388 ORTHO05D005106 6.8e-26 120.9 123 59.3
Glyma.04G035900 Glycine max HOM05D004388 ORTHO05D005106 6.8e-26 120.9 123 56.9
Sopen01g051240 Solanum pennellii HOM05D004388 ORTHO05D005106 8.9e-26 120.6 125 63.2
A09p55160 Brassica napus HOM05D004388 ORTHO05D005106 1.2e-25 120.2 127 62.2
BraA09t40924Z Brassica rapa HOM05D004388 ORTHO05D005106 1.2e-25 120.2 127 62.2
Lalb_Chr10g0095391 Lupinus albus HOM05D004388 ORTHO05D005106 1.2e-25 120.2 126 59.5
BcaC07g40816 Brassica carinata HOM05D004388 ORTHO05D005106 1.5e-25 119.8 127 62.2
C08p38090 Brassica napus HOM05D004388 ORTHO05D005106 1.5e-25 119.8 127 62.2
BolC8t51384H Brassica oleracea HOM05D004388 ORTHO05D005106 1.5e-25 119.8 127 62.2
Gorai.010G015700 Gossypium raimondii HOM05D004388 ORTHO05D005106 1.5e-25 119.8 130 57.7
PGSC0003DMG402025831 Solanum tuberosum HOM05D004388 ORTHO05D005106 1.5e-25 119.8 125 61.6
AT2G26500 Arabidopsis thaliana HOM05D004388 ORTHO05D005106 4.4e-25 118.2 129 61.2
Carub.0004s0666 Capsella rubella HOM05D004388 ORTHO05D005106 4.4e-25 118.2 129 61.2
AL4G19340 Arabidopsis lyrata HOM05D004388 ORTHO05D005106 5.8e-25 117.9 129 61.2
CARHR118500 Cardamine hirsuta HOM05D004388 ORTHO05D005106 5.8e-25 117.9 127 59.8
Lalb_Chr08g0245721 Lupinus albus HOM05D004388 ORTHO05D005106 5.8e-25 117.9 123 57.7
arahy.Tifrunner.gnm1.ann1.ISKM3Z Arachis hypogaea HOM05D004388 ORTHO05D005106 9.9e-25 117.1 126 56.3
unitig_21.g20762 Utricularia gibba HOM05D004388 ORTHO05D005106 9.9e-25 117.1 123 62.6
arahy.Tifrunner.gnm1.ann1.RG9LRA Arachis hypogaea HOM05D004388 ORTHO05D005106 1.3e-24 116.7 127 57.5
Sc15g0006590 Simmondsia chinensis HOM05D004388 ORTHO05D005106 1.7e-24 116.3 125 56.8
THA.LOC104803691 Tarenaya hassleriana HOM05D004388 ORTHO05D005106 2.2e-24 115.9 125 55.2
Aa31LG5G9370 Aethionema arabicum HOM05D004388 ORTHO05D005106 2.9e-24 115.5 124 58.9
Actinidia00479 Actinidia chinensis HOM05D000395 ORTHO05D005106 3.8e-24 115.2 124 56.5
TWI12G0249 Tripterygium wilfordii HOM05D004388 ORTHO05D005106 4.9e-24 114.8 128 57.8
TWI36G1636 Tripterygium wilfordii HOM05D004388 ORTHO05D005106 1.9e-23 112.8 127 56.7
Psat6g097040 Pisum sativum HOM05D004388 ORTHO05D005106 3.2e-23 112.1 131 56.5
SGA_v2.0_scaffold58G20597 Striga asiatica HOM05D004388 ORTHO05D005106 7.1e-23 110.9 127 55.1
unitig_744.g24243 Utricularia gibba HOM05D004388 ORTHO05D005106 7.1e-23 110.9 123 59.3
unitig_0.g849 Utricularia gibba HOM05D004388 ORTHO05D005106 7.8e-22 107.5 122 59.0
Rhsim05G0079000 Rhododendron simsii HOM05D004388 ORTHO05D005106 2.8e-19 99.0 123 54.5
HPP92_017776 Vanilla planifolia HOM05D004388 ORTHO05D005106 2.8e-19 99.0 124 51.6
Os03g0765900 Oryza sativa ssp. japonica HOM05D004388 ORTHO05D005106 1.1e-18 97.1 118 50.8
Zm00001eb058590 Zea mays HOM05D004388 ORTHO05D005106 3.4e-17 92.0 113 48.7
Potri.002G130000 Populus trichocarpa HOM05D004388 ORTHO05D005106 4.4e-17 91.7 105 53.3
Zm00001eb214080 Zea mays HOM05D004388 ORTHO05D005106 7.6e-17 90.9 123 48.0
Pp3c6_20300 Physcomitrium patens HOM05D004388 ORTHO05D005106 2.4e-15 85.9 122 43.4
Oeu010570.1 Olea europaea HOM05D000395 ORTHO05D000088 5.4e-15 84.7 79 64.6
AagrBONN_evm.TU.Sc2ySwM_228.5818 Anthoceros agrestis HOM05D004388 ORTHO05D005106 1.6e-14 83.2 88 53.4
Pp3c5_10730 Physcomitrium patens HOM05D004388 ORTHO05D005106 1.6e-14 83.2 122 41.8
TPR.G40836 Trifolium pratense HOM05D004388 ORTHO05D005106 4.6e-14 81.6 73 63.0
BcaB08g35304 Brassica carinata HOM05D004388 ORTHO05D005106 1.3e-13 80.1 51 82.4
CDE01G0191 Ceratophyllum demersum HOM05D004388 ORTHO05D005106 1.7e-13 79.7 58 74.1
GSVIVG01031853001 Vitis vinifera HOM05D008110 ORTHO05D005106 1.9e-12 76.3 71 60.6
SMO361G0239 Selaginella moellendorffii HOM05D004388 ORTHO05D005106 9.6e-12 73.9 120 43.3
Psat4g068600 Pisum sativum HOM05D004388 ORTHO05D005106 2.1e-11 72.8 110 48.2
Mapoly0043s0110 Marchantia polymorpha HOM05D004388 ORTHO05D005106 1.8e-10 69.7 124 40.3
CBR_g48936 Chara braunii HOM05D004388 ORTHO05D005106 2.4e-10 69.3 124 39.5
Actinidia12967 Actinidia chinensis HOM05D008110 ORTHO05D000088 9.3e-07 57.4 79 46.8
Psat3g122680 Pisum sativum HOM05D004388 ORTHO05D005106 2.1e-06 56.2 115 43.5


User provided reference genes

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