Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN27G3464 Fragaria x ananassa HOM05D004006 ORTHO05D004585 1.1e-112 409.8 196 100.0
FAN24G3177 Fragaria x ananassa HOM05D004006 ORTHO05D004585 3.7e-111 404.8 196 99.0
FAN20G2831 Fragaria x ananassa HOM05D004006 ORTHO05D004585 6.3e-111 404.1 196 98.5
FvH4_2g26860 Fragaria vesca HOM05D004006 ORTHO05D004585 1.2e-109 399.8 196 98.0
RcHm_v2.0_Chr6g0295711 Rosa chinensis HOM05D004006 ORTHO05D004585 7.7e-109 397.1 196 95.4
Prupe.1G498100 Prunus persica HOM05D004006 ORTHO05D004585 8.6e-84 313.9 216 75.0
MD15G1349700 Malus domestica HOM05D004006 ORTHO05D004585 1.5e-80 303.1 217 75.6
MD08G1163000 Malus domestica HOM05D004006 ORTHO05D004585 8.6e-76 287.3 214 71.5
Sed0014468 Sechium edule HOM05D004006 ORTHO05D004585 8.3e-63 244.2 196 64.3
Duzib093G0488 Durio zibethinus HOM05D004006 ORTHO05D004585 5.4e-62 241.5 205 62.9
ClCG08G005630 Citrullus lanatus HOM05D004006 ORTHO05D004585 7.1e-62 241.1 192 65.1
Thecc.08G124900 Theobroma cacao HOM05D004006 ORTHO05D004585 1.2e-61 240.4 208 63.9
CsaV3_6G034510 Cucumis sativus L. HOM05D004006 ORTHO05D004585 6.6e-60 234.6 197 62.4
MELO3C010605.2 Cucumis melo HOM05D004006 ORTHO05D004585 1.2e-58 230.3 197 61.4
Duzib116G0782 Durio zibethinus HOM05D004006 ORTHO05D004585 2.1e-58 229.6 205 61.5
COL.COLO4_35922 Corchorus olitorius HOM05D004006 ORTHO05D004585 3.6e-58 228.8 211 63.5
Hma1.2p1_0186F.1_g081800 Hydrangea macrophylla HOM05D004006 ORTHO05D004585 3.6e-58 228.8 207 61.4
Dinv27317 Davidia involucrata HOM05D004006 ORTHO05D004585 2.4e-57 226.1 203 62.1
Potri.002G083900 Populus trichocarpa HOM05D004006 ORTHO05D004585 5.2e-57 224.9 207 59.4
CiPaw.06G030700 Carya illinoinensis HOM05D004006 ORTHO05D004585 1.5e-56 223.4 222 60.4
Nn1g08787 Nelumbo nucifera HOM05D004006 ORTHO05D004585 2.0e-56 223.0 204 61.3
TAR628G0258 Trochodendron aralioides HOM05D004006 ORTHO05D004585 2.0e-56 223.0 200 60.5
CSS0040709 Camellia sinensis var. sinensis HOM05D004006 ORTHO05D004585 4.4e-56 221.9 205 59.0
Nn5g28281 Nelumbo nucifera HOM05D004006 ORTHO05D004585 9.9e-56 220.7 204 60.3
Cfa016015 Carpinus fangiana HOM05D004006 ORTHO05D004585 1.3e-55 220.3 216 58.8
Eucgr.F04353 Eucalyptus grandis HOM05D004006 ORTHO05D004585 8.4e-55 217.6 226 54.0
Manes.18G077000 Manihot esculenta HOM05D004006 ORTHO05D004585 1.9e-54 216.5 207 59.4
TAR376G1087 Trochodendron aralioides HOM05D004006 ORTHO05D004585 2.4e-54 216.1 192 61.5
TWI56G0850 Tripterygium wilfordii HOM05D004006 ORTHO05D004585 5.4e-54 214.9 213 58.2
TWI36G0058 Tripterygium wilfordii HOM05D004006 ORTHO05D004585 2.1e-53 213.0 220 56.8
CSS0019596 Camellia sinensis var. sinensis HOM05D004006 ORTHO05D004585 4.6e-53 211.8 208 61.1
Haze_00445 Corylus avellana HOM05D004006 ORTHO05D004585 4.6e-53 211.8 210 60.5
Potri.005G177600 Populus trichocarpa HOM05D004006 ORTHO05D004585 1.0e-52 210.7 206 57.8
GSVIVG01008871001 Vitis vinifera HOM05D004006 ORTHO05D004585 1.7e-52 209.9 186 61.3
PGR044G2543 Punica granatum HOM05D004006 ORTHO05D004585 2.3e-52 209.5 225 53.8
vmacro00834 Vaccinium macrocarpon HOM05D004006 ORTHO05D004585 1.2e-50 203.8 204 57.8
Cc10_g11860 Coffea canephora HOM05D004006 ORTHO05D004585 1.6e-50 203.4 205 53.7
Gorai.009G245700 Gossypium raimondii HOM05D004006 ORTHO05D004585 1.1e-49 200.7 213 56.8
Lj7P340T24 Lonicera japonica HOM05D004006 ORTHO05D004585 1.8e-49 199.9 201 55.7
Gohir.A05G235000 Gossypium hirsutum HOM05D004006 ORTHO05D004585 2.4e-49 199.5 213 56.3
Gohir.D01G180600 Gossypium hirsutum HOM05D004006 ORTHO05D004585 6.9e-49 198.0 209 59.3
Gohir.D05G237300 Gossypium hirsutum HOM05D004006 ORTHO05D004585 6.9e-49 198.0 213 56.3
Gorai.002G222000 Gossypium raimondii HOM05D004006 ORTHO05D004585 6.9e-49 198.0 209 59.3
MSTRG.1442 Avicennia marina HOM05D004006 ORTHO05D004585 1.2e-48 197.2 189 54.0
Glyma.04G249900 Glycine max HOM05D004006 ORTHO05D004585 2.0e-48 196.4 208 54.3
Glyma.06G113000 Glycine max HOM05D004006 ORTHO05D004585 4.4e-48 195.3 210 55.2
Lj1g0016270 Lotus japonicus HOM05D004006 ORTHO05D004585 5.8e-48 194.9 219 55.3
Gohir.A01G188900 Gossypium hirsutum HOM05D004006 ORTHO05D004585 1.3e-47 193.7 209 57.9
Gorai.005G089800 Gossypium raimondii HOM05D004006 ORTHO05D004585 2.9e-47 192.6 214 53.3
Aqoxy6G00215 Aquilegia oxysepala HOM05D004006 ORTHO05D004585 1.1e-46 190.7 222 52.3
Oeu050916.1 Olea europaea HOM05D004006 ORTHO05D004585 1.4e-46 190.3 201 53.2
Phvul.009G124900 Phaseolus vulgaris HOM05D004006 ORTHO05D004585 1.4e-46 190.3 219 52.5
CANSAT25G0779 Cannabis sativa HOM05D004006 ORTHO05D004585 1.9e-46 189.9 251 47.4
Duzib041G0805 Durio zibethinus HOM05D004006 ORTHO05D004585 2.4e-46 189.5 178 59.6
Gohir.A02G073100 Gossypium hirsutum HOM05D004006 ORTHO05D004585 3.2e-46 189.1 214 51.9
Oeu050917.2 Olea europaea HOM05D004006 ORTHO05D004585 3.2e-46 189.1 201 52.7
Ca_16556_v3 Cicer arietinum L. HOM05D004006 ORTHO05D004585 4.2e-46 188.7 226 50.9
Gohir.D02G080400 Gossypium hirsutum HOM05D004006 ORTHO05D004585 5.4e-46 188.3 214 51.4
MSTRG.22410 Avicennia marina HOM05D004006 ORTHO05D004585 2.7e-45 186.0 200 49.0
Manes.02G162900 Manihot esculenta HOM05D004006 ORTHO05D004585 3.5e-45 185.7 208 53.4
Rhsim06G0103600 Rhododendron simsii HOM05D004006 ORTHO05D004585 3.5e-45 185.7 213 54.5
TPR.G21067 Trifolium pratense HOM05D004006 ORTHO05D004585 7.8e-45 184.5 230 48.7
Ciclev10002301m.g Citrus clementina HOM05D004006 ORTHO05D004585 1.7e-44 183.3 231 51.5
THA.LOC104800196 Tarenaya hassleriana HOM05D004006 ORTHO05D004585 1.7e-44 183.3 210 53.3
RhsimUnG0092700 Rhododendron simsii HOM05D004006 ORTHO05D004585 3.9e-44 182.2 195 51.3
MBI16_g07656_MAGBIO Magnolia biondii HOM05D004006 ORTHO05D004585 5.1e-44 181.8 182 57.1
Actinidia21321 Actinidia chinensis HOM05D004006 ORTHO05D004585 8.7e-44 181.0 211 53.1
Peaxi162Scf00018g00027 Petunia axillaris HOM05D004006 ORTHO05D004585 1.1e-43 180.6 221 49.3
Dinv07222 Davidia involucrata HOM05D004006 ORTHO05D004585 1.3e-42 177.2 150 63.3
SGA_v2.0_scaffold52G18967 Striga asiatica HOM05D004006 ORTHO05D004585 1.3e-42 177.2 201 51.7
Actinidia29465 Actinidia chinensis HOM05D004006 ORTHO05D004585 2.1e-42 176.4 203 52.2
THA.LOC104813655 Tarenaya hassleriana HOM05D004006 ORTHO05D004585 2.1e-42 176.4 212 52.8
CDE02G3357 Ceratophyllum demersum HOM05D004006 ORTHO05D004585 4.8e-42 175.3 195 49.7
Lalb_Chr08g0241451 Lupinus albus HOM05D004006 ORTHO05D004585 4.8e-42 175.3 208 51.0
Lalb_Chr23g0271011 Lupinus albus HOM05D004006 ORTHO05D004585 5.3e-41 171.8 207 47.8
Actinidia03470 Actinidia chinensis HOM05D004006 ORTHO05D004585 9.0e-41 171.0 172 55.8
AL1G35020 Arabidopsis lyrata HOM05D004006 ORTHO05D004585 9.0e-41 171.0 196 49.5
Thhalv10008805m.g Eutrema salsugineum HOM05D004006 ORTHO05D004585 9.0e-41 171.0 196 50.0
Lalb_Chr10g0101721 Lupinus albus HOM05D004006 ORTHO05D004585 9.0e-41 171.0 201 50.7
Psat5g087920 Pisum sativum HOM05D004006 ORTHO05D004585 1.2e-40 170.6 212 48.1
VMungo1309G2318 Vigna mungo HOM05D004006 ORTHO05D004585 3.4e-40 169.1 216 48.6
Oeu026152.1 Olea europaea HOM05D004006 ORTHO05D004585 4.5e-40 168.7 184 53.3
CARHR022190 Cardamine hirsuta HOM05D004006 ORTHO05D004585 1.3e-39 167.2 196 50.0
Medtr3g088010 Medicago truncatula HOM05D004006 ORTHO05D004585 3.8e-39 165.6 223 47.1
Sp1g19380 Schrenkiella parvula HOM05D004006 ORTHO05D004585 6.4e-39 164.9 197 49.7
A08p28790 Brassica napus HOM05D004006 ORTHO05D004585 1.9e-38 163.3 196 48.0
BraA08t34808Z Brassica rapa HOM05D004006 ORTHO05D004585 1.9e-38 163.3 196 48.0
Carub.0001s2127 Capsella rubella HOM05D004006 ORTHO05D004585 1.9e-38 163.3 196 48.5
arahy.Tifrunner.gnm1.ann1.CFE04G Arachis hypogaea HOM05D004006 ORTHO05D004585 3.2e-38 162.5 229 45.0
BcaC07g39124 Brassica carinata HOM05D004006 ORTHO05D004585 4.2e-38 162.2 196 47.4
C08p21130 Brassica napus HOM05D004006 ORTHO05D004585 4.2e-38 162.2 196 47.4
BolC8t49750H Brassica oleracea HOM05D004006 ORTHO05D004585 4.2e-38 162.2 196 47.4
BcaC06g34904 Brassica carinata HOM05D004006 ORTHO05D004585 5.4e-38 161.8 200 48.5
C07p21950 Brassica napus HOM05D004006 ORTHO05D004585 5.4e-38 161.8 200 48.5
BolC7t42725H Brassica oleracea HOM05D004006 ORTHO05D004585 5.4e-38 161.8 200 48.5
Glyma.13G079800 Glycine max HOM05D004006 ORTHO05D004585 7.1e-38 161.4 199 51.3
arahy.Tifrunner.gnm1.ann1.J26PKP Arachis hypogaea HOM05D004006 ORTHO05D004585 9.3e-38 161.0 226 45.6
Atru.chr13.1448 Acer truncatum HOM05D004006 ORTHO05D004585 2.1e-37 159.8 213 47.4
Atru.chr13.1472 Acer truncatum HOM05D004006 ORTHO05D004585 2.1e-37 159.8 213 47.4
BcaB03g11881 Brassica carinata HOM05D004006 ORTHO05D004585 3.5e-37 159.1 188 49.5
BcaB03g14254 Brassica carinata HOM05D004006 ORTHO05D004585 6.0e-37 158.3 198 48.0
Migut.C01125 Erythranthe guttata HOM05D004006 ORTHO05D004585 6.0e-37 158.3 200 48.0
AT1G21830 Arabidopsis thaliana HOM05D004006 ORTHO05D004585 1.3e-36 157.1 197 47.2
Oeu047951.1 Olea europaea HOM05D004006 ORTHO05D004585 3.0e-36 156.0 183 50.8
A07p14920 Brassica napus HOM05D004006 ORTHO05D004585 3.9e-36 155.6 204 46.6
BraA07t29235Z Brassica rapa HOM05D004006 ORTHO05D004585 3.9e-36 155.6 204 46.6
ATR0584G004 Amborella trichopoda HOM05D004006 ORTHO05D004585 6.7e-36 154.8 198 47.0
Hund17292 Selenicereus undatus HOM05D004006 ORTHO05D004585 6.7e-36 154.8 239 41.0
CDE08G0380 Ceratophyllum demersum HOM05D004006 ORTHO05D004585 1.1e-35 154.1 182 48.4
Nitab4.5_0016080g0010 Nicotiana tabacum HOM05D004006 ORTHO05D004585 1.9e-35 153.3 217 47.0
EL10Ac1g01007 Beta vulgaris HOM05D004006 ORTHO05D004585 3.3e-35 152.5 241 41.5
BraA06t24881Z Brassica rapa HOM05D004006 ORTHO05D004585 3.3e-35 152.5 199 46.7
DCAR_014087 Daucus carota HOM05D004006 ORTHO05D004585 3.3e-35 152.5 191 51.8
MBI09_g12159_MAGBIO Magnolia biondii HOM05D004006 ORTHO05D004585 3.3e-35 152.5 180 48.3
A06p17910 Brassica napus HOM05D004006 ORTHO05D004585 4.3e-35 152.1 199 46.2
Nitab4.5_0000051g0220 Nicotiana tabacum HOM05D004006 ORTHO05D004585 4.3e-35 152.1 217 48.8
MSTRG.25384 Avicennia marina HOM05D004006 ORTHO05D004585 5.6e-35 151.8 192 47.9
BcaB07g32181 Brassica carinata HOM05D004006 ORTHO05D004585 7.4e-35 151.4 199 45.7
BcaC05g26103 Brassica carinata HOM05D004006 ORTHO05D004585 7.4e-35 151.4 199 45.7
C05p20810 Brassica napus HOM05D004006 ORTHO05D004585 7.4e-35 151.4 199 45.7
BolC5t30780H Brassica oleracea HOM05D004006 ORTHO05D004585 2.1e-34 149.8 199 45.2
Glyma.14G150000 Glycine max HOM05D004006 ORTHO05D004585 6.2e-34 148.3 192 51.6
PGSC0003DMG400027788 Solanum tuberosum HOM05D004006 ORTHO05D004585 1.4e-33 147.1 212 45.8
Oeu059434.1 Olea europaea HOM05D004006 ORTHO05D004585 5.3e-33 145.2 182 44.5
BcaB07g32179 Brassica carinata HOM05D004006 ORTHO05D004585 6.9e-33 144.8 199 46.2
Solyc11g013450.2 Solanum lycopersicum HOM05D004006 ORTHO05D004585 1.2e-32 144.1 214 44.9
Gorai.009G283200 Gossypium raimondii HOM05D004006 ORTHO05D004585 2.6e-32 142.9 169 52.1
Gohir.D05G270600 Gossypium hirsutum HOM05D004006 ORTHO05D004585 1.3e-31 140.6 173 51.4
PSO528G0204 Papaver somniferum HOM05D004006 ORTHO05D004585 2.2e-31 139.8 252 38.5
PSO170G2295 Papaver somniferum HOM05D004006 ORTHO05D004585 1.1e-30 137.5 259 39.0
SGA_v2.0_scaffold24G10460 Striga asiatica HOM05D004006 ORTHO05D004585 1.9e-30 136.7 186 44.6
SalBow6G7056 Salvia bowleyana HOM05D004006 ORTHO05D004585 2.7e-29 132.9 168 47.6
Migut.N03284 Erythranthe guttata HOM05D004006 ORTHO05D004585 1.8e-28 130.2 185 42.2
SGA_v2.0_scaffold25G11123 Striga asiatica HOM05D004006 ORTHO05D004585 1.5e-27 127.1 185 42.2
SalBow7G3581 Salvia bowleyana HOM05D004006 ORTHO05D004585 3.7e-26 122.5 181 42.0
Cpa.g.sc64.85 Carica papaya HOM05D004006 ORTHO05D004585 2.4e-25 119.8 141 52.5
Lsat_1_v5_gn_5_101481 Lactuca sativa HOM05D004006 ORTHO05D004585 2.4e-25 119.8 190 40.5
Hund26811 Selenicereus undatus HOM05D004006 ORTHO05D004585 5.3e-25 118.6 181 43.1
VMungo0647G0089 Vigna mungo HOM05D004006 ORTHO05D004585 6.9e-25 118.2 102 60.8
THA.LOC104806821 Tarenaya hassleriana HOM05D004006 ORTHO05D004585 2.6e-24 116.3 209 37.8
Os04g0690500 Oryza sativa ssp. japonica HOM05D004006 ORTHO05D004585 8.4e-23 111.3 219 37.9
HanXRQChr04g0125261 Helianthus annuus HOM05D004006 ORTHO05D004585 1.4e-22 110.5 198 38.4
THA.LOC104817318 Tarenaya hassleriana HOM05D004006 ORTHO05D004585 1.9e-22 110.2 215 35.3
Sopen11g008440 Solanum pennellii HOM05D004006 ORTHO05D004585 4.2e-22 109.0 150 47.3
HPP92_011945 Vanilla planifolia HOM05D004006 ORTHO05D004585 4.2e-22 109.0 196 36.2
CDE06G0283 Ceratophyllum demersum HOM05D004006 ORTHO05D004585 1.0e-20 104.4 179 38.0
Gohir.A05G268750 Gossypium hirsutum HOM05D004006 ORTHO05D004585 5.1e-20 102.1 119 53.8
CARHR035970 Cardamine hirsuta HOM05D004006 ORTHO05D004585 1.5e-19 100.5 201 34.8
CDE08G1629 Ceratophyllum demersum HOM05D004006 ORTHO05D004585 5.7e-19 98.6 167 38.3
Lj4C625T3 Lonicera japonica HOM05D004006 ORTHO05D004585 1.3e-18 97.4 85 60.0
Carub.0001s3524 Capsella rubella HOM05D004006 ORTHO05D004585 1.1e-17 94.4 202 30.7
AUR62014339 Chenopodium quinoa HOM05D004006 ORTHO05D004585 4.1e-17 92.4 126 46.8
Aa31LG7G5780 Aethionema arabicum HOM05D004006 ORTHO05D004585 6.9e-17 91.7 149 40.9
Sabra02G0065700 Salix brachista HOM05D004006 ORTHO05D004585 4.5e-16 89.0 98 53.1
AL1G52380 Arabidopsis lyrata HOM05D004006 ORTHO05D004585 1.3e-15 87.4 200 33.0
A10p07490 Brassica napus HOM05D004006 ORTHO05D004585 1.3e-15 87.4 177 33.9
BraSC36t46058Z Brassica rapa HOM05D004006 ORTHO05D004585 1.3e-15 87.4 177 33.9
BcaC08g42859 Brassica carinata HOM05D004006 ORTHO05D004585 1.7e-15 87.0 177 33.9
C06p00700 Brassica napus HOM05D004006 ORTHO05D004585 1.7e-15 87.0 177 33.9
BolC6t35208H Brassica oleracea HOM05D004006 ORTHO05D004585 2.2e-15 86.7 177 33.3
Thhalv10011817m.g Eutrema salsugineum HOM05D004006 ORTHO05D004585 2.9e-15 86.3 160 35.0
PSO017G3194 Papaver somniferum HOM05D004006 ORTHO05D004585 1.4e-14 84.0 257 30.7
Sabra05G0134100 Salix brachista HOM05D004006 ORTHO05D004585 1.9e-14 83.6 96 52.1
HPP92_011964 Vanilla planifolia HOM05D004006 ORTHO05D004585 9.4e-14 81.3 188 33.5
RcHm_v2.0_Chr5g0007251 Rosa chinensis HOM05D044691 ORTHO05D004585 6.1e-13 78.6 62 64.5
AT1G44608 Arabidopsis thaliana HOM05D004006 ORTHO05D004585 7.9e-13 78.2 185 31.9
RcHm_v2.0_Chr5g0081311 Rosa chinensis HOM05D044691 ORTHO05D004585 3.9e-12 75.9 56 69.6
unitig_46.g18107 Utricularia gibba HOM05D004006 ORTHO05D004585 8.8e-12 74.7 158 34.2
Sp1g33590 Schrenkiella parvula HOM05D004006 ORTHO05D004585 7.4e-11 71.6 177 31.1
Phvul.008G163001 Phaseolus vulgaris HOM05D004006 ORTHO05D004585 8.2e-10 68.2 91 50.5
CDE12G0877 Ceratophyllum demersum HOM05D004006 ORTHO05D004585 2.4e-09 66.6 112 40.2
Aa31LG6G9320 Aethionema arabicum HOM05D004006 ORTHO05D004585 1.2e-08 64.3 175 33.1
VMungo0647G1885 Vigna mungo HOM05D004006 ORTHO05D004585 1.0e-07 61.2 91 45.1
Ah.05g171110 Amaranthus hybridus HOM05D004006 ORTHO05D004585 1.9e-06 57.0 93 40.9


User provided reference genes

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