Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN27G3438 Fragaria x ananassa HOM05D003739 ORTHO05D003996 1.3e-260 902.5 464 100.0
FvH4_2g03400 Fragaria vesca HOM05D003739 ORTHO05D003996 5.9e-192 674.5 472 79.0
FAN24G0708 Fragaria x ananassa HOM05D003739 ORTHO05D003996 1.5e-171 606.7 492 72.8
RcHm_v2.0_Chr6g0265811 Rosa chinensis HOM05D003739 ORTHO05D003996 2.5e-158 562.8 519 64.0
RcHm_v2.0_Chr5g0054461 Rosa chinensis HOM05D003739 ORTHO05D003996 7.3e-158 561.2 526 62.2
FAN27G2905 Fragaria x ananassa HOM05D003739 ORTHO05D003996 1.3e-135 487.3 512 56.8
FvH4_2g03360 Fragaria vesca HOM05D003739 ORTHO05D003996 2.1e-133 479.9 475 62.7
FvH4_2g09520 Fragaria vesca HOM05D003739 ORTHO05D003996 1.9e-129 466.8 514 56.0
FAN15G1163 Fragaria x ananassa HOM05D003739 ORTHO05D003996 3.5e-128 462.6 506 55.5
FAN24G2517 Fragaria x ananassa HOM05D003739 ORTHO05D003996 2.8e-125 453.0 506 55.7
RcHm_v2.0_Chr6g0265821 Rosa chinensis HOM05D003739 ORTHO05D003996 4.8e-117 425.6 344 69.2
FvH4_2g09510 Fragaria vesca HOM05D003739 ORTHO05D003996 1.8e-95 354.0 489 47.6
Prupe.8G091800 Prunus persica HOM05D003739 ORTHO05D003996 3.0e-71 273.5 502 42.8
MD10G1070200 Malus domestica HOM05D003739 ORTHO05D003996 1.7e-69 267.7 520 39.8
FAN15G1290 Fragaria x ananassa HOM05D003739 ORTHO05D003996 3.1e-55 220.3 157 77.1
QL11p044151 Quercus lobata HOM05D003739 ORTHO05D003996 5.4e-52 209.5 522 36.0
Haze_18940 Corylus avellana HOM05D004345 ORTHO05D005192 3.1e-47 193.7 530 34.5
CiPaw.06G133400 Carya illinoinensis HOM05D003739 ORTHO05D003996 1.5e-46 191.4 540 34.8
CiPaw.10G121500 Carya illinoinensis HOM05D003739 ORTHO05D003996 1.5e-46 191.4 534 34.3
Cfa005045 Carpinus fangiana HOM05D003739 ORTHO05D003996 4.4e-46 189.9 517 33.8
GSVIVG01023816001 Vitis vinifera HOM05D003739 ORTHO05D003996 5.8e-46 189.5 518 35.1
CANSAT54G2857 Cannabis sativa HOM05D003739 ORTHO05D003996 8.9e-39 165.6 510 31.0
TAR628G0054 Trochodendron aralioides HOM05D003739 ORTHO05D003996 2.2e-37 161.0 551 32.1
Ciclev10027900m.g Citrus clementina HOM05D003739 ORTHO05D003996 1.2e-35 155.2 521 31.9
Atru.chr12.1298 Acer truncatum HOM05D003739 ORTHO05D003996 4.6e-35 153.3 521 30.3
CANSAT11G0250 Cannabis sativa HOM05D003739 ORTHO05D003996 2.0e-30 137.9 495 28.9
Nn4g24182 Nelumbo nucifera HOM05D003739 ORTHO05D003996 2.6e-30 137.5 524 30.3
CSS0038123 Camellia sinensis var. sinensis HOM05D003739 ORTHO05D003996 1.7e-29 134.8 509 30.1
Sed0001527 Sechium edule HOM05D003739 ORTHO05D003996 8.4e-29 132.5 509 30.3
Sabra10G0016300 Salix brachista HOM05D003739 ORTHO05D003996 4.2e-28 130.2 353 32.6
Potri.010G019600 Populus trichocarpa HOM05D003739 ORTHO05D003996 6.0e-27 126.3 375 31.7
Atru.chr5.3065 Acer truncatum HOM05D003739 ORTHO05D003996 1.3e-26 125.2 361 31.9
MSTRG.9105 Avicennia marina HOM05D003739 ORTHO05D003996 3.9e-26 123.6 506 29.2
ClCG01G008230 Citrullus lanatus HOM05D003739 ORTHO05D003996 3.9e-26 123.6 525 30.7
Manes.11G084700 Manihot esculenta HOM05D003739 ORTHO05D003996 5.1e-26 123.2 469 30.9
PSO339G5323 Papaver somniferum HOM05D003739 ORTHO05D003996 1.1e-25 122.1 473 30.4
Oeu005537.3 Olea europaea HOM05D003739 ORTHO05D003996 1.9e-25 121.3 524 29.4
Dinv05658 Davidia involucrata HOM05D003739 ORTHO05D003996 2.5e-25 120.9 313 35.5
Gohir.A09G091100 Gossypium hirsutum HOM05D003739 ORTHO05D003996 4.3e-25 120.2 497 29.4
Gorai.006G107300 Gossypium raimondii HOM05D003739 ORTHO05D003996 2.8e-24 117.5 538 29.0
Gohir.D09G091100 Gossypium hirsutum HOM05D003739 ORTHO05D003996 1.1e-23 115.5 523 29.1
Actinidia35828 Actinidia chinensis HOM05D003739 ORTHO05D003996 5.3e-23 113.2 489 28.6
Duzib187G1144 Durio zibethinus HOM05D003739 ORTHO05D003996 9.0e-23 112.5 487 28.7
ECA234G4722 Erigeron canadensis HOM05D003739 ORTHO05D003996 9.0e-23 112.5 359 33.1
CAN.G809.70 Capsicum annuum HOM05D003739 ORTHO05D003996 2.6e-22 110.9 451 26.6
CsaV3_5G020720 Cucumis sativus L. HOM05D003739 ORTHO05D003996 3.4e-22 110.5 486 29.0
FAN24G0282 Fragaria x ananassa HOM05D003739 ORTHO05D003996 3.8e-21 107.1 136 52.9
PSO063G1830 Papaver somniferum HOM05D003739 ORTHO05D003996 3.8e-21 107.1 401 32.2
Thecc.08G060300 Theobroma cacao HOM05D003739 ORTHO05D003996 4.9e-21 106.7 448 28.8
PGR042G2822 Punica granatum HOM05D003739 ORTHO05D003996 6.4e-21 106.3 493 27.0
Cpa.g.sc14.123 Carica papaya HOM05D003739 ORTHO05D003996 7.1e-20 102.8 299 32.1
Cc09_g05210 Coffea canephora HOM05D003739 ORTHO05D003996 1.2e-19 102.1 514 28.4
Glyma.01G228200 Glycine max HOM05D003739 ORTHO05D003996 2.7e-19 100.9 394 27.9
COL.COLO4_32233 Corchorus olitorius HOM05D003739 ORTHO05D003996 3.5e-19 100.5 559 27.0
MBI16_g35489_MAGBIO Magnolia biondii HOM05D033968 ORTHO05D003996 3.5e-19 100.5 364 29.9
Lalb_Chr11g0068001 Lupinus albus HOM05D003739 ORTHO05D003996 4.6e-19 100.1 356 29.2
Sed0009728 Sechium edule HOM05D003739 ORTHO05D003996 6.0e-19 99.8 486 27.8
Atru.chr12.1559 Acer truncatum HOM05D003739 ORTHO05D003996 1.8e-18 98.2 284 33.5
Peaxi162Scf00048g01417 Petunia axillaris HOM05D003739 ORTHO05D003996 6.7e-18 96.3 522 26.4
LjContig00222g0016564 Lotus japonicus HOM05D003739 ORTHO05D003996 8.7e-18 95.9 424 26.9
CDE06G1699 Ceratophyllum demersum HOM05D003739 ORTHO05D003996 2.5e-17 94.4 418 28.5
Phvul.002G039700 Phaseolus vulgaris HOM05D003739 ORTHO05D003996 3.3e-17 94.0 245 30.6
HanXRQChr10g0289001 Helianthus annuus HOM05D003739 ORTHO05D003996 7.4e-17 92.8 320 30.3
PSO675G5166 Papaver somniferum HOM05D003739 ORTHO05D003996 7.4e-17 92.8 387 29.7
TWI79G1707 Tripterygium wilfordii HOM05D003739 ORTHO05D003996 7.4e-17 92.8 517 26.1
Dinv13445 Davidia involucrata HOM05D003739 ORTHO05D003996 9.6e-17 92.4 185 36.2
Aqoxy2G03991 Aquilegia oxysepala HOM05D003739 ORTHO05D003996 2.1e-16 91.3 374 28.1
VMungo1215G1752 Vigna mungo HOM05D003739 ORTHO05D003996 2.1e-16 91.3 245 30.6
Medtr8g091850 Medicago truncatula HOM05D003739 ORTHO05D003996 4.8e-16 90.1 235 33.6
HPP92_028201 Vanilla planifolia HOM05D003739 ORTHO05D003996 4.8e-16 90.1 304 27.3
PSO541G6540 Papaver somniferum HOM05D003739 ORTHO05D003996 1.4e-15 88.6 388 29.4
Lj8C306T17 Lonicera japonica HOM05D003739 ORTHO05D003996 4.0e-15 87.0 413 28.6
Actinidia20856 Actinidia chinensis HOM05D003739 ORTHO05D003996 1.5e-14 85.1 313 30.7
MELO3C005063.2 Cucumis melo HOM05D003739 ORTHO05D003996 1.5e-14 85.1 370 30.5
THA.LOC104800691 Tarenaya hassleriana HOM05D003739 ORTHO05D003996 1.5e-14 85.1 275 29.1
Nitab4.5_0006794g0060 Nicotiana tabacum HOM05D003739 ORTHO05D003996 2.6e-14 84.3 239 29.7
unitig_46.g18632 Utricularia gibba HOM05D003739 ORTHO05D003996 2.6e-14 84.3 369 28.2
DCAR_004344 Daucus carota HOM05D003739 ORTHO05D003996 4.5e-14 83.6 464 27.4
Eucgr.A01623 Eucalyptus grandis HOM05D003739 ORTHO05D003996 5.8e-14 83.2 492 26.6
Lj6g0022884 Lotus japonicus HOM05D003739 ORTHO05D003996 7.6e-14 82.8 299 28.8
arahy.Tifrunner.gnm1.ann1.H3NIN5 Arachis hypogaea HOM05D003739 ORTHO05D003996 2.2e-13 81.3 394 26.9
FAN20G1594 Fragaria x ananassa HOM05D003739 ORTHO05D003996 2.2e-13 81.3 140 41.4
Migut.F00900 Erythranthe guttata HOM05D003739 ORTHO05D003996 2.9e-13 80.9 438 26.0
Glyma.11G010900 Glycine max HOM05D003739 ORTHO05D003996 4.9e-13 80.1 272 30.9
Aa31LG6G16100 Aethionema arabicum HOM05D003739 ORTHO05D003996 1.4e-12 78.6 270 31.1
Nitab4.5_0010401g0020 Nicotiana tabacum HOM05D003739 ORTHO05D003996 4.2e-12 77.0 456 25.2
ATR0564G411 Amborella trichopoda HOM05D003739 ORTHO05D003996 5.5e-12 76.6 273 29.7
arahy.Tifrunner.gnm1.ann1.TF9NF6 Arachis hypogaea HOM05D003739 ORTHO05D003996 5.5e-12 76.6 390 25.9
TPR.G2246 Trifolium pratense HOM05D003739 ORTHO05D003996 5.5e-12 76.6 365 28.2
Sopen02g026250 Solanum pennellii HOM05D003739 ORTHO05D003996 7.1e-12 76.3 435 24.4
PGSC0003DMG402017733 Solanum tuberosum HOM05D003739 ORTHO05D003996 7.1e-12 76.3 439 25.5
CARHR247590 Cardamine hirsuta HOM05D003739 ORTHO05D003996 9.3e-12 75.9 147 35.4
AUR62005990 Chenopodium quinoa HOM05D003739 ORTHO05D003996 1.2e-11 75.5 325 27.1
Medtr8g091830 Medicago truncatula HOM05D003739 ORTHO05D003996 2.7e-11 74.3 264 28.0
Lsat_1_v5_gn_5_112881 Lactuca sativa HOM05D003739 ORTHO05D003996 4.6e-11 73.6 483 25.5
TAR376G0790 Trochodendron aralioides HOM05D003739 ORTHO05D003996 4.6e-11 73.6 330 28.8
Hund09717 Selenicereus undatus HOM05D003739 ORTHO05D003996 1.0e-10 72.4 349 25.5
SGA_v2.0_scaffold62G21539 Striga asiatica HOM05D003739 ORTHO05D003996 1.8e-10 71.6 463 24.8
C03p77640 Brassica napus HOM05D003739 ORTHO05D003996 5.1e-10 70.1 151 32.5
BolC3t20021H Brassica oleracea HOM05D003739 ORTHO05D003996 5.1e-10 70.1 151 32.5
Sp3g07810 Schrenkiella parvula HOM05D003739 ORTHO05D000043 8.7e-10 69.3 245 29.4
AL7G11100 Arabidopsis lyrata HOM05D003739 ORTHO05D003996 1.1e-09 68.9 265 26.4
A08p23790 Brassica napus HOM05D003739 ORTHO05D003996 2.5e-09 67.8 231 27.3
Thhalv10024751m.g Eutrema salsugineum HOM05D003739 ORTHO05D003996 3.3e-09 67.4 266 28.6
BraA06t27734Z Brassica rapa HOM05D003739 ORTHO05D003996 2.1e-08 64.7 224 31.2
Hund09716 Selenicereus undatus HOM05D003739 ORTHO05D003996 2.1e-08 64.7 500 26.4
AUR62028080 Chenopodium quinoa HOM05D003739 ORTHO05D003996 4.8e-08 63.5 512 22.9
AT4G39160 Arabidopsis thaliana HOM05D003739 ORTHO05D003996 6.2e-08 63.2 267 26.6
A06p48670 Brassica napus HOM05D003739 ORTHO05D003996 6.2e-08 63.2 219 30.6
C09p07090 Brassica napus HOM05D003739 ORTHO05D003996 6.2e-08 63.2 259 24.7
CARHR106820 Cardamine hirsuta HOM05D003739 ORTHO05D003996 1.8e-07 61.6 252 28.2
BraA08t34331Z Brassica rapa HOM05D003739 ORTHO05D003996 3.1e-07 60.8 268 25.4
SalBow6G4317 Salvia bowleyana HOM05D003739 ORTHO05D003996 3.1e-07 60.8 476 24.4
Zm00001eb249730 Zea mays HOM05D025681 ORTHO05D003996 4.0e-07 60.5 42 61.9
Nitab4.5_0004903g0060 Nicotiana tabacum HOM05D003739 ORTHO05D003996 5.3e-07 60.1 243 25.5
Dinv05659 Davidia involucrata HOM05D003739 ORTHO05D003996 6.9e-07 59.7 151 30.5
BcaC01g00285 Brassica carinata HOM05D000394 ORTHO05D000299 9.0e-07 59.3 138 29.7
A09p06800 Brassica napus HOM05D003739 ORTHO05D003996 9.0e-07 59.3 129 29.5
BraA09t36326Z Brassica rapa HOM05D003739 ORTHO05D003996 9.0e-07 59.3 129 29.5
Zm00001eb261130 Zea mays HOM05D025681 ORTHO05D003996 1.5e-06 58.5 123 32.5
BcaC04g23559 Brassica carinata HOM05D003739 ORTHO05D003996 2.0e-06 58.2 264 24.6
BolC9t53626H Brassica oleracea HOM05D003739 ORTHO05D003996 2.0e-06 58.2 259 23.9
Carub.0007s0104 Capsella rubella HOM05D003739 ORTHO05D003996 2.0e-06 58.2 264 26.9
BcaB03g12246 Brassica carinata HOM05D003739 ORTHO05D003996 4.5e-06 57.0 259 26.6
HPP92_008918 Vanilla planifolia HOM05D003739 ORTHO05D003996 7.6e-06 56.2 181 28.2
BcaNung03888 Brassica carinata HOM05D003739 ORTHO05D003996 1.0e-05 55.8 284 27.5
Psat7g051640 Pisum sativum HOM05D003739 ORTHO05D003996 1.0e-05 55.8 371 25.1


User provided reference genes

Program Settings