Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN27G3432 Fragaria x ananassa HOM05D003855 ORTHO05D004722 0.0e+00 2155.6 1094 100.0
FvH4_2g06380 Fragaria vesca HOM05D003855 ORTHO05D004722 0.0e+00 2077.0 1110 96.0
FAN15G0137 Fragaria x ananassa HOM05D003855 ORTHO05D004722 0.0e+00 2069.3 1158 92.7
FAN20G0084 Fragaria x ananassa HOM05D003855 ORTHO05D004722 0.0e+00 2057.0 1210 89.1
RcHm_v2.0_Chr6g0258261 Rosa chinensis HOM05D003855 ORTHO05D004722 0.0e+00 1935.2 1088 91.6
Prupe.8G122100 Prunus persica HOM05D003855 ORTHO05D004722 0.0e+00 1852.4 1091 86.6
Duzib052G0714 Durio zibethinus HOM05D003855 ORTHO05D004722 0.0e+00 1773.8 1089 82.8
Thecc.02G098600 Theobroma cacao HOM05D003855 ORTHO05D004722 0.0e+00 1773.8 1089 82.7
Gohir.D04G162300 Gossypium hirsutum HOM05D003855 ORTHO05D004722 0.0e+00 1772.3 1091 82.5
Gorai.012G150300 Gossypium raimondii HOM05D003855 ORTHO05D004722 0.0e+00 1771.9 1092 82.7
Gohir.A04G120800 Gossypium hirsutum HOM05D003855 ORTHO05D004722 0.0e+00 1766.5 1091 82.4
COL.COLO4_32675 Corchorus olitorius HOM05D003855 ORTHO05D004722 0.0e+00 1760.0 1086 82.5
Cpa.g.sc62.29 Carica papaya HOM05D003855 ORTHO05D004722 0.0e+00 1758.4 1087 81.8
Ciclev10027722m.g Citrus clementina HOM05D003855 ORTHO05D004722 0.0e+00 1755.7 1085 81.8
Cfa005469 Carpinus fangiana HOM05D003855 ORTHO05D004722 0.0e+00 1753.0 1082 81.8
Manes.10G066200 Manihot esculenta HOM05D003855 ORTHO05D004722 0.0e+00 1749.2 1085 81.3
QL11p036227 Quercus lobata HOM05D003855 ORTHO05D004722 0.0e+00 1748.4 1110 80.4
Dinv42141 Davidia involucrata HOM05D003855 ORTHO05D004722 0.0e+00 1740.7 1087 81.5
Eucgr.G01465 Eucalyptus grandis HOM05D003855 ORTHO05D004722 0.0e+00 1727.2 1093 80.3
CiPaw.05G052400 Carya illinoinensis HOM05D003855 ORTHO05D004722 0.0e+00 1725.3 1087 80.3
Potri.004G142300 Populus trichocarpa HOM05D003855 ORTHO05D004722 0.0e+00 1723.8 1091 80.8
CSS0001000 Camellia sinensis var. sinensis HOM05D003855 ORTHO05D004722 0.0e+00 1723.0 1084 80.3
TWI79G1596 Tripterygium wilfordii HOM05D003855 ORTHO05D004722 0.0e+00 1722.2 1089 80.2
GSVIVG01031766001 Vitis vinifera HOM05D003855 ORTHO05D004722 0.0e+00 1712.2 1101 79.3
MELO3C018441.2 Cucumis melo HOM05D003855 ORTHO05D004722 0.0e+00 1705.3 1085 79.3
Potri.009G103700 Populus trichocarpa HOM05D003855 ORTHO05D004722 0.0e+00 1705.3 1091 80.1
Sabra09G0079400 Salix brachista HOM05D003855 ORTHO05D004722 0.0e+00 1701.8 1087 79.9
PGR042G3302 Punica granatum HOM05D003855 ORTHO05D004722 0.0e+00 1700.3 1083 80.1
CsaV3_7G008690 Cucumis sativus L. HOM05D003855 ORTHO05D004722 0.0e+00 1699.5 1085 78.7
Sed0020763 Sechium edule HOM05D003855 ORTHO05D004722 0.0e+00 1693.3 1087 78.3
Nn5g30224 Nelumbo nucifera HOM05D003855 ORTHO05D004722 0.0e+00 1692.2 1081 78.7
ECA234G3461 Erigeron canadensis HOM05D003855 ORTHO05D004722 0.0e+00 1691.8 1077 78.3
arahy.Tifrunner.gnm1.ann1.7G1ZKD Arachis hypogaea HOM05D003855 ORTHO05D004722 0.0e+00 1691.0 1082 79.5
TAR381G1366 Trochodendron aralioides HOM05D003855 ORTHO05D004722 0.0e+00 1690.6 1085 78.8
Dinv23608 Davidia involucrata HOM05D003855 ORTHO05D004722 0.0e+00 1689.5 1085 79.4
SalBow6G4323 Salvia bowleyana HOM05D003855 ORTHO05D004722 0.0e+00 1679.8 1111 77.4
Aqoxy6G01362 Aquilegia oxysepala HOM05D003855 ORTHO05D004722 0.0e+00 1679.1 1010 82.2
Sabra04G0094100 Salix brachista HOM05D003855 ORTHO05D004722 0.0e+00 1677.5 1053 80.4
DCAR_029027 Daucus carota HOM05D003855 ORTHO05D004722 0.0e+00 1669.4 1094 77.1
Migut.B00330 Erythranthe guttata HOM05D003855 ORTHO05D004722 0.0e+00 1669.1 1081 77.6
Ca_24336_v3 Cicer arietinum L. HOM05D003855 ORTHO05D004722 0.0e+00 1667.1 1085 77.3
AL3G32540 Arabidopsis lyrata HOM05D003855 ORTHO05D004722 0.0e+00 1664.8 1081 78.1
PSO675G1899 Papaver somniferum HOM05D003855 ORTHO05D004722 0.0e+00 1664.4 1015 81.7
Lj1g0003010 Lotus japonicus HOM05D003855 ORTHO05D004722 0.0e+00 1663.7 1012 80.9
Phvul.002G054400 Phaseolus vulgaris HOM05D003855 ORTHO05D004722 0.0e+00 1663.7 1044 79.5
AT3G19170 Arabidopsis thaliana HOM05D003855 ORTHO05D004722 0.0e+00 1661.4 1075 78.0
MBI06_g04502_MAGBIO Magnolia biondii HOM05D003855 ORTHO05D004722 0.0e+00 1659.4 1090 77.4
Sp3g17240 Schrenkiella parvula HOM05D003855 ORTHO05D004722 0.0e+00 1658.7 1075 77.9
VMungo1215G1975 Vigna mungo HOM05D003855 ORTHO05D004722 0.0e+00 1657.5 1092 76.5
MSTRG.16753 Avicennia marina HOM05D003855 ORTHO05D004722 0.0e+00 1657.1 1079 77.5
HanXRQChr10g0301751 Helianthus annuus HOM05D003855 ORTHO05D004722 0.0e+00 1655.6 1084 76.6
Medtr5g004680 Medicago truncatula HOM05D003855 ORTHO05D004722 0.0e+00 1655.6 1090 77.1
Sc08g0000010 Simmondsia chinensis HOM05D003855 ORTHO05D004722 0.0e+00 1655.6 1082 77.2
Carub.0001s3883 Capsella rubella HOM05D003855 ORTHO05D004722 0.0e+00 1655.2 1076 78.2
Peaxi162Scf00016g01731 Petunia axillaris HOM05D003855 ORTHO05D004722 0.0e+00 1655.2 1080 76.9
Sopen01g050820 Solanum pennellii HOM05D003855 ORTHO05D004722 0.0e+00 1654.8 1080 76.9
PSO541G0814 Papaver somniferum HOM05D003855 ORTHO05D004722 0.0e+00 1654.0 1015 81.1
Solyc01g108600.3 Solanum lycopersicum HOM05D003855 ORTHO05D004722 0.0e+00 1652.9 1080 76.9
Thhalv10019955m.g Eutrema salsugineum HOM05D003855 ORTHO05D004722 0.0e+00 1652.5 1079 77.6
Glyma.01G244900 Glycine max HOM05D003855 ORTHO05D004722 0.0e+00 1652.5 1122 75.5
BcaB04g19030 Brassica carinata HOM05D003855 ORTHO05D004722 0.0e+00 1652.1 1072 78.1
BraA01t03617Z Brassica rapa HOM05D003855 ORTHO05D004722 0.0e+00 1652.1 1091 77.0
PGSC0003DMG400025820 Solanum tuberosum HOM05D003855 ORTHO05D004722 0.0e+00 1651.3 1080 76.9
Oeu007277.1 Olea europaea HOM05D003855 ORTHO05D004722 0.0e+00 1651.0 1082 77.2
Thhalv10011199m.g Eutrema salsugineum HOM05D003855 ORTHO05D004722 0.0e+00 1648.6 1079 77.5
Carub.0003s1899 Capsella rubella HOM05D003855 ORTHO05D004722 0.0e+00 1644.0 1081 77.1
A01p35360 Brassica napus HOM05D003855 ORTHO05D004722 0.0e+00 1643.6 1073 77.8
Psat4g213560 Pisum sativum HOM05D003855 ORTHO05D004722 0.0e+00 1643.2 1078 76.6
AL1G57020 Arabidopsis lyrata HOM05D003855 ORTHO05D004722 0.0e+00 1642.9 1073 77.8
A03p41100 Brassica napus HOM05D003855 ORTHO05D004722 0.0e+00 1642.9 1070 77.7
BraA03t13267Z Brassica rapa HOM05D003855 ORTHO05D004722 0.0e+00 1642.1 1070 77.7
THA.LOC104818544 Tarenaya hassleriana HOM05D003855 ORTHO05D004722 0.0e+00 1642.1 1067 78.0
AT1G49630 Arabidopsis thaliana HOM05D003855 ORTHO05D004722 0.0e+00 1641.3 1074 77.7
CARHR094570 Cardamine hirsuta HOM05D003855 ORTHO05D004722 0.0e+00 1641.3 1077 77.0
Lalb_Chr16g0376231 Lupinus albus HOM05D003855 ORTHO05D004722 0.0e+00 1640.9 1007 80.1
C03p50190 Brassica napus HOM05D003855 ORTHO05D004722 0.0e+00 1639.0 1072 77.9
BolC3t17311H Brassica oleracea HOM05D003855 ORTHO05D004722 0.0e+00 1638.2 1072 77.9
BcaC01g03642 Brassica carinata HOM05D003855 ORTHO05D004722 0.0e+00 1637.5 1075 77.4
C01p44870 Brassica napus HOM05D003855 ORTHO05D004722 0.0e+00 1636.3 1093 76.2
Hund00328 Selenicereus undatus HOM05D003855 ORTHO05D004722 0.0e+00 1628.6 1085 75.1
Nitab4.5_0001899g0100 Nicotiana tabacum HOM05D003855 ORTHO05D004722 0.0e+00 1625.5 1112 74.9
BcaB07g33638 Brassica carinata HOM05D003855 ORTHO05D004722 0.0e+00 1625.1 1078 76.7
Cc02_g18640 Coffea canephora HOM05D003855 ORTHO05D004722 0.0e+00 1624.8 1082 74.8
Sp1g36500 Schrenkiella parvula HOM05D003855 ORTHO05D004722 0.0e+00 1624.8 1084 76.2
THA.LOC104801598 Tarenaya hassleriana HOM05D003855 ORTHO05D004722 0.0e+00 1623.6 1072 77.1
BcaC08g43166 Brassica carinata HOM05D003855 ORTHO05D004722 0.0e+00 1620.1 1076 76.2
BolC1t04455H Brassica oleracea HOM05D003855 ORTHO05D004722 0.0e+00 1619.4 1143 73.1
A06p03570 Brassica napus HOM05D003855 ORTHO05D004722 0.0e+00 1618.2 1080 75.8
C06p04590 Brassica napus HOM05D003855 ORTHO05D004722 0.0e+00 1618.2 1081 75.7
SGA_v2.0_scaffold32G13071 Striga asiatica HOM05D003855 ORTHO05D004722 0.0e+00 1618.2 1105 74.4
BolC6t35586H Brassica oleracea HOM05D003855 ORTHO05D004722 0.0e+00 1617.8 1082 75.8
BraA06t23565Z Brassica rapa HOM05D003855 ORTHO05D004722 0.0e+00 1617.8 1072 76.7
Aa31LG8G5960 Aethionema arabicum HOM05D003855 ORTHO05D004722 0.0e+00 1615.1 1084 76.5
Lsat_1_v5_gn_5_112961 Lactuca sativa HOM05D003855 ORTHO05D004722 0.0e+00 1612.8 1071 75.7
ATR0100G044 Amborella trichopoda HOM05D003855 ORTHO05D004722 0.0e+00 1599.7 1082 74.5
EL10Ac9g21832 Beta vulgaris HOM05D003855 ORTHO05D004722 0.0e+00 1597.8 1070 76.4
Nitab4.5_0002097g0080 Nicotiana tabacum HOM05D003855 ORTHO05D004722 0.0e+00 1592.0 1080 75.1
CDE10G0143 Ceratophyllum demersum HOM05D003855 ORTHO05D004722 0.0e+00 1585.1 1082 73.7
MD10G1092200 Malus domestica HOM05D003855 ORTHO05D004722 0.0e+00 1584.7 1090 77.1
Aa31LG10G4390 Aethionema arabicum HOM05D003855 ORTHO05D004722 0.0e+00 1583.9 1071 75.7
vmacro02191 Vaccinium macrocarpon HOM05D003855 ORTHO05D004722 0.0e+00 1582.4 1169 70.3
Zm00001eb255690 Zea mays HOM05D003855 ORTHO05D004722 0.0e+00 1580.5 1016 77.6
Rhsim11G0167000 Rhododendron simsii HOM05D003855 ORTHO05D004722 0.0e+00 1577.8 1198 68.7
Ah.01g020190 Amaranthus hybridus HOM05D003855 ORTHO05D004722 0.0e+00 1575.5 1123 72.2
AUR62011441 Chenopodium quinoa HOM05D003855 ORTHO05D004722 0.0e+00 1569.3 1115 72.5
DCAR_001621 Daucus carota HOM05D003855 ORTHO05D004722 0.0e+00 1567.4 1058 74.8
ClCG02G005810 Citrullus lanatus HOM05D003855 ORTHO05D004722 0.0e+00 1535.8 1113 71.7
AUR62016621 Chenopodium quinoa HOM05D003855 ORTHO05D004722 0.0e+00 1491.5 969 76.3
Lj5A208T47 Lonicera japonica HOM05D003855 ORTHO05D004722 0.0e+00 1476.8 869 83.5
TPR.G21611 Trifolium pratense HOM05D003855 ORTHO05D004722 0.0e+00 1476.8 914 79.2
SGA_v2.0_scaffold90G27671 Striga asiatica HOM05D003855 ORTHO05D004722 0.0e+00 1441.0 1006 72.0
Pp3c5_3160 Physcomitrium patens HOM05D003855 ORTHO05D004722 0.0e+00 1423.7 1009 69.5
Mapoly0138s0034 Marchantia polymorpha HOM05D003855 ORTHO05D004722 0.0e+00 1391.7 1033 66.8
Haze_01842 Corylus avellana HOM05D003855 ORTHO05D004722 0.0e+00 1369.8 1099 67.1
Haze_01847 Corylus avellana HOM05D003855 ORTHO05D004722 0.0e+00 1368.6 1099 67.0
arahy.Tifrunner.gnm1.ann1.920WM2 Arachis hypogaea HOM05D003855 ORTHO05D004722 0.0e+00 1359.7 804 82.7
SMO169G0211 Selaginella moellendorffii HOM05D003855 ORTHO05D004722 0.0e+00 1341.6 957 68.5
Prupe.8G122200 Prunus persica HOM05D003855 ORTHO05D004722 0.0e+00 1289.2 1076 63.9
CBR_g17894 Chara braunii HOM05D003855 ORTHO05D004722 0.0e+00 1270.0 1018 63.4
MD11G1150900 Malus domestica HOM05D003855 ORTHO05D004722 0.0e+00 1254.6 752 85.8
HPP92_005967 Vanilla planifolia HOM05D003855 ORTHO05D004722 0.0e+00 1216.1 832 74.0
CAN.G1041.7 Capsicum annuum HOM05D003855 ORTHO05D004722 0.0e+00 1189.5 748 79.1
CARHR039670 Cardamine hirsuta HOM05D003855 ORTHO05D004722 0.0e+00 1167.9 722 80.6
Cre01.g020918 Chlamydomonas reinhardtii HOM05D003855 ORTHO05D004722 0.0e+00 1110.1 1046 55.0
MCO05G354 Micromonas commoda HOM05D003855 ORTHO05D004722 0.0e+00 1104.0 1025 53.8
PRCOL_00004407 Prasinoderma coloniale HOM05D003855 ORTHO05D004722 3.7e-311 1071.6 990 55.2
DCAR_001622 Daucus carota HOM05D003855 ORTHO05D004722 3.7e-309 1065.1 739 72.0
MD05G1078000 Malus domestica HOM05D003855 ORTHO05D004722 8.8e-303 1043.9 881 62.8
Mapoly0813s0001 Marchantia polymorpha HOM05D003855 ORTHO05D004722 4.5e-267 925.2 777 60.0
unitig_21.g20751 Utricularia gibba HOM05D003855 ORTHO05D004722 1.6e-264 916.8 884 57.0
Actinidia00451 Actinidia chinensis HOM05D003855 ORTHO05D004722 1.0e-263 914.1 596 77.7
SHI05876 Sapria himalayana HOM05D003855 ORTHO05D004722 5.6e-257 891.7 582 74.9
CBR_g29853 Chara braunii HOM05D003855 ORTHO05D004722 1.7e-234 817.0 985 44.4
Mapoly0138s0037 Marchantia polymorpha HOM05D003855 ORTHO05D004722 2.1e-216 756.9 671 57.5
ECA238G1787 Erigeron canadensis HOM05D003855 ORTHO05D004722 2.0e-214 750.4 642 61.4
HanXRQChr07g0196921 Helianthus annuus HOM05D003855 ORTHO05D004722 1.6e-208 730.7 731 53.9
Actinidia00452 Actinidia chinensis HOM05D003855 ORTHO05D004722 1.1e-188 664.8 412 79.9
Actinidia12962 Actinidia chinensis HOM05D003855 ORTHO05D004722 1.4e-180 637.9 532 64.5
SEGI_28735 Sequoiadendron giganteum HOM05D003855 ORTHO05D004722 1.3e-176 624.8 413 74.8
Atru.chr5.2746 Acer truncatum HOM05D003855 ORTHO05D004722 8.0e-171 605.5 416 74.0
Ciclev10029929m.g Citrus clementina HOM05D003855 ORTHO05D004722 8.0e-171 605.5 504 65.7
Atru.chr5.2745 Acer truncatum HOM05D003855 ORTHO05D004722 2.2e-165 587.4 347 86.5
Ciclev10030315m.g Citrus clementina HOM05D003855 ORTHO05D004722 2.0e-158 564.3 476 65.5
Lsat_1_v5_gn_2_29981 Lactuca sativa HOM05D003855 ORTHO05D004722 5.5e-156 556.2 393 67.4
SHI03491 Sapria himalayana HOM05D000105 ORTHO05D004722 2.8e-152 543.9 1042 36.5
FAN24G2426 Fragaria x ananassa HOM05D003855 ORTHO05D004722 3.1e-151 540.4 304 93.1
SHI05877 Sapria himalayana HOM05D003855 ORTHO05D004722 2.6e-137 494.2 396 65.2
SEGI_28882 Sequoiadendron giganteum HOM05D003855 ORTHO05D004722 6.8e-130 469.5 323 71.5
HPP92_005974 Vanilla planifolia HOM05D003855 ORTHO05D004722 1.5e-129 468.4 309 72.2
CAN.G1041.6 Capsicum annuum HOM05D003855 ORTHO05D004722 1.0e-117 429.1 406 58.9
MCO14G172 Micromonas commoda HOM05D003855 ORTHO05D004722 1.2e-110 405.6 1001 30.0
PRCOL_00005085 Prasinoderma coloniale HOM05D003855 ORTHO05D004722 1.4e-106 392.1 960 29.5
Atru.chr5.2744 Acer truncatum HOM05D003855 ORTHO05D004722 2.0e-105 388.3 227 83.3
Cfa026983 Carpinus fangiana HOM05D003855 ORTHO05D004722 4.8e-99 367.1 984 28.0
PRCOL_00005679 Prasinoderma coloniale HOM05D003855 ORTHO05D004722 4.9e-96 357.1 901 30.4
SEGI_22772 Sequoiadendron giganteum HOM05D003855 ORTHO05D004722 5.1e-69 267.3 153 82.4
MD05G1078600 Malus domestica HOM05D003855 ORTHO05D004722 1.7e-64 252.3 222 59.9
CBR_g30953 Chara braunii HOM05D003855 ORTHO05D004722 5.3e-58 230.7 851 24.3
MD05G1077700 Malus domestica HOM05D003855 ORTHO05D004722 5.7e-52 210.7 310 43.9
Aqoxy7G03045 Aquilegia oxysepala HOM05D003855 ORTHO05D004722 2.7e-49 201.8 332 33.4
MD05G1078400 Malus domestica HOM05D003855 ORTHO05D246709 1.9e-47 195.7 220 55.9
Os02g0761400 Oryza sativa ssp. japonica HOM05D003855 ORTHO05D004722 2.2e-43 182.2 124 72.6
SHI03495 Sapria himalayana HOM05D000119 ORTHO05D000054 8.3e-43 180.3 154 64.9
Mapoly0138s0035 Marchantia polymorpha HOM05D003855 ORTHO05D004722 9.1e-42 176.8 154 57.8
MD05G1077600 Malus domestica HOM05D003855 ORTHO05D004722 1.1e-39 169.9 113 68.1
MD05G1078300 Malus domestica HOM05D003855 ORTHO05D249195 8.0e-38 163.7 273 37.7
COL.COLO4_14247 Corchorus olitorius HOM05D003855 ORTHO05D004722 2.6e-36 158.7 135 63.0
Sc23g0007040 Simmondsia chinensis HOM05D003855 ORTHO05D004722 4.4e-36 157.9 149 55.7
CBR_g46009 Chara braunii HOM05D003248 ORTHO05D000301 1.2e-33 149.8 463 26.6
CBR_g30954 Chara braunii HOM05D003855 ORTHO05D004722 4.5e-33 147.9 162 44.4
SHI06221 Sapria himalayana HOM05D003855 ORTHO05D000001 1.2e-28 133.3 109 58.7
CBR_g53546 Chara braunii HOM05D003855 ORTHO05D000497 3.5e-25 121.7 430 26.3
MD05G1077900 Malus domestica HOM05D003855 ORTHO05D004722 1.3e-24 119.8 99 63.6
Lj5A208T46 Lonicera japonica HOM05D003855 ORTHO05D004722 3.9e-24 118.2 151 49.7
CBR_g53548 Chara braunii HOM05D003855 ORTHO05D004722 1.9e-23 115.9 287 26.5
Actinidia12961 Actinidia chinensis HOM05D003855 ORTHO05D004722 1.7e-16 92.8 83 62.7
MD07G1090800 Malus domestica HOM05D003855 ORTHO05D247201 5.6e-15 87.8 80 57.5
AUR62024613 Chenopodium quinoa HOM05D025040 ORTHO05D138236 6.8e-13 80.9 56 69.6
Lsat_1_v5_gn_9_77040 Lactuca sativa HOM05D003409 ORTHO05D004015 3.7e-11 75.1 45 77.8
VMungo1309G1152 Vigna mungo HOM05D003855 ORTHO05D000575 1.9e-10 72.8 51 64.7
Psat1g111840 Pisum sativum HOM05D001198 ORTHO05D001599 2.7e-09 68.9 170 36.5
Lsat_1_v5_gn_1_14301 Lactuca sativa HOM05D003855 ORTHO05D004560 5.1e-08 64.7 36 80.6
MD05G1078700 Malus domestica HOM05D003855 ORTHO05D004722 8.6e-08 63.9 77 49.4


User provided reference genes

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