Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN27G3410 Fragaria x ananassa HOM05D006820 ORTHO05D008526 5.3e-125 451.1 229 100.0
FvH4_2g16540 Fragaria vesca HOM05D006820 ORTHO05D008526 1.7e-120 436.0 229 96.5
FAN24G1561 Fragaria x ananassa HOM05D006820 ORTHO05D008526 3.3e-119 431.8 227 96.0
FAN15G1990 Fragaria x ananassa HOM05D006820 ORTHO05D008526 4.3e-119 431.4 229 95.6
RcHm_v2.0_Chr6g0280561 Rosa chinensis HOM05D006820 ORTHO05D008526 1.1e-114 416.8 229 90.8
MD10G1138800 Malus domestica HOM05D006820 ORTHO05D008526 1.1e-103 380.2 230 82.2
Prupe.8G177600 Prunus persica HOM05D006820 ORTHO05D008526 6.2e-102 374.4 229 79.9
RcHm_v2.0_Chr1g0329291 Rosa chinensis HOM05D006820 ORTHO05D008526 5.9e-92 341.3 230 73.9
CSS0042496 Camellia sinensis var. sinensis HOM05D006820 ORTHO05D008526 7.7e-92 340.9 224 75.0
CANSAT25G2916 Cannabis sativa HOM05D006820 ORTHO05D008526 2.9e-91 339.0 229 72.1
Gorai.008G040700 Gossypium raimondii HOM05D006820 ORTHO05D008526 1.2e-89 333.6 225 72.4
QL11p053925 Quercus lobata HOM05D006820 ORTHO05D008526 1.6e-89 333.2 242 69.4
Manes.04G064800 Manihot esculenta HOM05D006820 ORTHO05D008526 2.1e-89 332.8 227 71.4
Duzib132G0878 Durio zibethinus HOM05D006820 ORTHO05D008526 3.6e-89 332.0 226 72.1
FvH4_7g04340 Fragaria vesca HOM05D006820 ORTHO05D008526 7.9e-89 330.9 230 71.3
TWI79G0714 Tripterygium wilfordii HOM05D006820 ORTHO05D008526 7.9e-89 330.9 227 70.0
TAR625G0986 Trochodendron aralioides HOM05D006820 ORTHO05D008526 1.4e-88 330.1 227 70.9
Atru.chr5.3527 Acer truncatum HOM05D006820 ORTHO05D008526 2.3e-88 329.3 229 70.7
Ciclev10029216m.g Citrus clementina HOM05D006820 ORTHO05D008526 8.8e-88 327.4 225 71.6
Thecc.02G045600 Theobroma cacao HOM05D006820 ORTHO05D008526 1.1e-87 327.0 226 71.2
PGSC0003DMG400014660 Solanum tuberosum HOM05D006820 ORTHO05D008526 1.5e-87 326.6 224 70.5
CiPaw.06G118200 Carya illinoinensis HOM05D006820 ORTHO05D008526 4.3e-87 325.1 225 71.6
Peaxi162Scf00362g00246 Petunia axillaris HOM05D006820 ORTHO05D008526 4.3e-87 325.1 221 71.9
Solyc01g112160.4 Solanum lycopersicum HOM05D006820 ORTHO05D008526 1.3e-86 323.6 224 70.1
PGR142G1762 Punica granatum HOM05D006820 ORTHO05D008526 2.2e-86 322.8 226 71.7
Nitab4.5_0011212g0060 Nicotiana tabacum HOM05D006820 ORTHO05D008526 8.2e-86 320.9 223 70.9
CAN.G1725.10 Capsicum annuum HOM05D006820 ORTHO05D008526 1.1e-85 320.5 223 70.4
GSVIVG01023895001 Vitis vinifera HOM05D006820 ORTHO05D008526 1.1e-85 320.5 227 69.2
Haze_02054 Corylus avellana HOM05D006820 ORTHO05D008526 1.4e-85 320.1 248 64.9
FAN01G0447 Fragaria x ananassa HOM05D006820 ORTHO05D008526 1.8e-85 319.7 248 65.7
Lj9A405G64 Lonicera japonica HOM05D006820 ORTHO05D008526 2.4e-85 319.3 226 68.1
Sopen01g054210 Solanum pennellii HOM05D006820 ORTHO05D008526 2.4e-85 319.3 224 69.2
FAN06G4449 Fragaria x ananassa HOM05D006820 ORTHO05D008526 5.3e-85 318.2 248 65.7
Nn6g31730 Nelumbo nucifera HOM05D006820 ORTHO05D008526 2.6e-84 315.8 227 65.6
Potri.009G165400 Populus trichocarpa HOM05D006820 ORTHO05D008526 3.4e-84 315.5 219 69.4
Eucgr.I01511 Eucalyptus grandis HOM05D006820 ORTHO05D008526 1.0e-83 313.9 219 68.5
Actinidia32013 Actinidia chinensis HOM05D006820 ORTHO05D008526 1.3e-83 313.5 226 69.9
FAN03G3185 Fragaria x ananassa HOM05D006820 ORTHO05D008526 5.0e-83 311.6 248 64.1
LjContig00081g0000354 Lotus japonicus HOM05D006820 ORTHO05D008526 1.1e-82 310.5 221 68.3
vmacro17294 Vaccinium macrocarpon HOM05D006820 ORTHO05D008526 7.2e-82 307.8 227 69.2
DCAR_015665 Daucus carota HOM05D006820 ORTHO05D008526 1.6e-81 306.6 223 65.5
AUR62012929 Chenopodium quinoa HOM05D006820 ORTHO05D008526 1.8e-80 303.1 225 63.6
Aa31LG6G16790 Aethionema arabicum HOM05D006820 ORTHO05D008526 3.9e-80 302.0 227 63.4
Lsat_1_v5_gn_8_120400 Lactuca sativa HOM05D006820 ORTHO05D008526 3.9e-80 302.0 224 65.6
AUR62011713 Chenopodium quinoa HOM05D006820 ORTHO05D008526 5.1e-80 301.6 229 62.0
Glyma.14G001800 Glycine max HOM05D006820 ORTHO05D008526 8.8e-80 300.8 225 65.3
PSO541G0178 Papaver somniferum HOM05D006820 ORTHO05D008526 1.5e-79 300.1 225 68.9
Ah.01g007660 Amaranthus hybridus HOM05D006820 ORTHO05D008526 2.0e-79 299.7 229 63.3
CsaV3_5G012520 Cucumis sativus L. HOM05D006820 ORTHO05D008526 2.6e-79 299.3 227 64.8
Phvul.008G291600 Phaseolus vulgaris HOM05D006820 ORTHO05D008526 3.3e-79 298.9 224 63.8
EL10Ac9g21258 Beta vulgaris HOM05D006820 ORTHO05D008526 4.4e-79 298.5 226 63.7
Sc18g0005950 Simmondsia chinensis HOM05D006820 ORTHO05D008526 5.7e-79 298.1 224 64.3
PSO675G9330 Papaver somniferum HOM05D006820 ORTHO05D008526 7.4e-79 297.7 221 68.8
Migut.B00016 Erythranthe guttata HOM05D006820 ORTHO05D008526 9.7e-79 297.4 225 64.9
arahy.Tifrunner.gnm1.ann1.6J1J15 Arachis hypogaea HOM05D006820 ORTHO05D008526 2.2e-78 296.2 221 65.2
BcaC01g00229 Brassica carinata HOM05D006820 ORTHO05D008526 3.7e-78 295.4 226 62.8
Carub.0007s0026 Capsella rubella HOM05D006820 ORTHO05D008526 3.7e-78 295.4 222 63.1
Medtr5g099030 Medicago truncatula HOM05D006820 ORTHO05D008526 2.4e-77 292.7 221 64.3
BraA08t34377Z Brassica rapa HOM05D000807 ORTHO05D000662 3.1e-77 292.4 228 62.7
HanXRQChr14g0459061 Helianthus annuus HOM05D006820 ORTHO05D008526 3.1e-77 292.4 229 62.4
SGA_v2.0_scaffold58G20319 Striga asiatica HOM05D006820 ORTHO05D008526 3.1e-77 292.4 232 62.9
Hund06169 Selenicereus undatus HOM05D006820 ORTHO05D008526 4.1e-77 292.0 219 62.6
TPR.G18648 Trifolium pratense HOM05D006820 ORTHO05D008526 7.0e-77 291.2 221 63.8
Lalb_Chr10g0095311 Lupinus albus HOM05D006820 ORTHO05D008526 9.1e-77 290.8 221 64.3
VMungo0647G2489 Vigna mungo HOM05D006820 ORTHO05D008526 9.1e-77 290.8 224 62.1
Aqoxy6G01707 Aquilegia oxysepala HOM05D006820 ORTHO05D008526 1.2e-76 290.4 221 65.6
BcaC01g00221 Brassica carinata HOM05D006820 ORTHO05D008526 1.5e-76 290.0 226 62.8
THA.LOC104804082 Tarenaya hassleriana HOM05D006820 ORTHO05D008526 1.5e-76 290.0 227 61.2
arahy.Tifrunner.gnm1.ann1.696HI2 Arachis hypogaea HOM05D006820 ORTHO05D008526 2.0e-76 289.7 221 63.8
BolC3t19961H Brassica oleracea HOM05D000807 ORTHO05D000662 2.0e-76 289.7 226 63.3
ECA233G1752 Erigeron canadensis HOM05D006820 ORTHO05D008526 2.6e-76 289.3 206 66.5
AT4G38370 Arabidopsis thaliana HOM05D006820 ORTHO05D008526 3.5e-76 288.9 228 61.0
PSO017G7138 Papaver somniferum HOM05D006820 ORTHO05D008526 4.5e-76 288.5 221 67.0
AL7G10240 Arabidopsis lyrata HOM05D006820 ORTHO05D008526 1.3e-75 287.0 228 60.1
BraA08t34346Z Brassica rapa HOM05D006820 ORTHO05D008526 1.7e-75 286.6 226 62.4
Sp7g37400 Schrenkiella parvula HOM05D006820 ORTHO05D008526 3.8e-75 285.4 229 60.7
Gohir.A12G033700 Gossypium hirsutum HOM05D006820 ORTHO05D008526 5.0e-75 285.0 224 64.3
Thhalv10004876m.g Eutrema salsugineum HOM05D006820 ORTHO05D008526 1.1e-74 283.9 229 60.7
CARHR294110 Cardamine hirsuta HOM05D006820 ORTHO05D008526 1.4e-74 283.5 224 60.3
CDE07G0154 Ceratophyllum demersum HOM05D006820 ORTHO05D008526 8.8e-72 274.2 221 59.3
unitig_0.g2740 Utricularia gibba HOM05D006820 ORTHO05D008526 2.6e-71 272.7 231 59.7
PSO541G2729 Papaver somniferum HOM05D006820 ORTHO05D008526 4.1e-69 265.4 231 59.3
ATR0661G540 Amborella trichopoda HOM05D006820 ORTHO05D008526 4.5e-68 261.9 226 56.6
Gohir.D12G038800 Gossypium hirsutum HOM05D006820 ORTHO05D008526 1.7e-67 260.0 165 73.3
PSO675G0855 Papaver somniferum HOM05D006820 ORTHO05D008526 2.2e-67 259.6 223 59.6
Zm00001eb088270 Zea mays HOM05D006820 ORTHO05D008526 1.1e-66 257.3 233 55.8
Os04g0224600 Oryza sativa ssp. japonica HOM05D006820 ORTHO05D008526 3.0e-64 249.2 221 54.8
Oeu021963.1 Olea europaea HOM05D006820 ORTHO05D008526 4.8e-62 241.9 221 58.8
MELO3C022591.2 Cucumis melo HOM05D006820 ORTHO05D008526 6.3e-62 241.5 162 69.1
Dinv41882 Davidia involucrata HOM05D006820 ORTHO05D008526 2.2e-59 233.0 141 75.9
COL.COLO4_17938 Corchorus olitorius HOM05D006820 ORTHO05D008526 5.0e-59 231.9 161 68.3
Rhsim05G0047800 Rhododendron simsii HOM05D006820 ORTHO05D008526 5.0e-59 231.9 235 54.9
Sed0016165 Sechium edule HOM05D006820 ORTHO05D008526 2.5e-58 229.6 169 63.9
RhsimUnG0142100 Rhododendron simsii HOM05D006820 ORTHO05D008526 4.2e-58 228.8 235 54.5
SalBow1G3348 Salvia bowleyana HOM05D006820 ORTHO05D008526 5.5e-58 228.4 175 63.4
Psat2g001280 Pisum sativum HOM05D006820 ORTHO05D008526 9.4e-58 227.6 157 64.3
AagrBONN_evm.TU.Sc2ySwM_344.5004 Anthoceros agrestis HOM05D006820 ORTHO05D008526 1.6e-57 226.9 225 48.9
Pp3c6_22700 Physcomitrium patens HOM05D006820 ORTHO05D008526 1.6e-57 226.9 219 55.7
AagrBONN_evm.TU.Sc2ySwM_344.4995 Anthoceros agrestis HOM05D007543 ORTHO05D008526 2.7e-57 226.1 221 49.3
Mapoly0119s0027 Marchantia polymorpha HOM05D006820 ORTHO05D008526 2.0e-55 219.9 217 50.2
SMO347G0521 Selaginella moellendorffii HOM05D006820 ORTHO05D008526 9.8e-55 217.6 217 53.0
ClCG02G009990 Citrullus lanatus HOM05D006820 ORTHO05D008526 6.3e-54 214.9 170 62.4
PSO170G2156 Papaver somniferum HOM05D006820 ORTHO05D008526 1.6e-52 210.3 174 62.1
HPP92_025502 Vanilla planifolia HOM05D006820 ORTHO05D008526 2.6e-47 193.0 167 56.3
HPP92_025534 Vanilla planifolia HOM05D006820 ORTHO05D008526 2.2e-46 189.9 167 55.7
arahy.Tifrunner.gnm1.ann1.MXMJ8X Arachis hypogaea HOM05D006820 ORTHO05D008526 4.1e-45 185.7 143 61.5
C03p77090 Brassica napus HOM05D000564 ORTHO05D002780 1.7e-43 180.3 120 70.0
A08p24230 Brassica napus HOM05D000564 ORTHO05D002780 1.1e-42 177.6 120 69.2
CBR_g8644 Chara braunii HOM05D006820 ORTHO05D008526 4.7e-41 172.2 246 43.9
MD05G1133800 Malus domestica HOM05D006820 ORTHO05D008526 8.9e-40 167.9 151 60.3
MD10G1042800 Malus domestica HOM05D006820 ORTHO05D008526 8.9e-40 167.9 144 63.2
Cc09_g10680 Coffea canephora HOM05D006820 ORTHO05D008526 1.2e-36 157.5 107 66.4
CSS0041656 Camellia sinensis var. sinensis HOM05D006820 ORTHO05D008526 3.9e-35 152.5 116 68.1
Cpa.g.sc20.200 Carica papaya HOM05D006820 ORTHO05D008526 5.8e-31 138.7 126 54.8
Cre13.g564000 Chlamydomonas reinhardtii HOM05D006820 ORTHO05D008526 2.7e-28 129.8 222 37.4
arahy.Tifrunner.gnm1.ann1.JU0VI1 Arachis hypogaea HOM05D006820 ORTHO05D008526 7.6e-23 111.7 106 54.7
AUR62010100 Chenopodium quinoa HOM05D000002 ORTHO05D000001 8.9e-16 88.2 161 34.8
Cc00_g33760 Coffea canephora HOM05D006820 ORTHO05D008526 2.0e-15 87.0 59 72.9
Cc09_g10670 Coffea canephora HOM05D006820 ORTHO05D008526 2.0e-15 87.0 59 72.9
A09p68760 Brassica napus HOM05D006820 ORTHO05D008526 4.2e-13 79.3 113 42.5
BraA09t42215Z Brassica rapa HOM05D006820 ORTHO05D008526 4.2e-13 79.3 113 42.5
arahy.Tifrunner.gnm1.ann1.E18LML Arachis hypogaea HOM05D006820 ORTHO05D008526 1.1e-08 64.7 47 66.0
MCO16G270 Micromonas commoda HOM05D006935 ORTHO05D008944 1.8e-08 63.9 180 28.3
Mapoly0091s0071 Marchantia polymorpha HOM05D006935 ORTHO05D008944 4.4e-07 59.3 183 29.5
HPP92_024712 Vanilla planifolia HOM05D006935 ORTHO05D008944 4.4e-07 59.3 179 29.1
Zm00001eb359580 Zea mays HOM05D006935 ORTHO05D008944 9.9e-07 58.2 180 31.7
SalBow5G1860 Salvia bowleyana HOM05D006935 ORTHO05D008944 2.2e-06 57.0 179 30.2
Hund09430 Selenicereus undatus HOM05D006935 ORTHO05D004872 2.2e-06 57.0 179 31.8
ClCG02G010000 Citrullus lanatus HOM05D006820 ORTHO05D008526 6.4e-06 55.5 29 86.2
Os01g0660900 Oryza sativa ssp. japonica HOM05D006935 ORTHO05D008944 6.4e-06 55.5 179 29.6
CDE04G2457 Ceratophyllum demersum HOM05D005049 ORTHO05D004872 8.4e-06 55.1 179 30.7
Phvul.003G199600 Phaseolus vulgaris HOM05D006935 ORTHO05D008944 8.4e-06 55.1 180 31.1


User provided reference genes

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