Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN27G3322 Fragaria x ananassa HOM05D007718 ORTHO05D009752 6.6e-61 237.3 126 100.0
RcHm_v2.0_Chr6g0251251 Rosa chinensis HOM05D007718 ORTHO05D009752 6.0e-46 187.6 124 82.3
Prupe.8G007200 Prunus persica HOM05D007718 ORTHO05D009752 3.5e-38 161.8 126 67.5
MD05G1004000 Malus domestica HOM05D007718 ORTHO05D009752 8.9e-34 147.1 122 66.4
Dinv22108 Davidia involucrata HOM05D007718 ORTHO05D009752 1.9e-31 139.4 101 68.3
TWI18G0705 Tripterygium wilfordii HOM05D007718 ORTHO05D009752 2.4e-31 139.0 125 58.4
GSVIVG01036292001 Vitis vinifera HOM05D007718 ORTHO05D009752 3.2e-31 138.7 128 57.8
QL08p027549 Quercus lobata HOM05D007718 ORTHO05D009752 4.1e-31 138.3 117 65.0
CANSAT21G0081 Cannabis sativa HOM05D007718 ORTHO05D009752 2.1e-30 136.0 92 71.7
CANSAT21G2143 Cannabis sativa HOM05D007718 ORTHO05D009752 2.1e-30 136.0 92 71.7
PSO017G4737 Papaver somniferum HOM05D007718 ORTHO05D009752 7.8e-30 134.0 123 58.5
Nn5g27289 Nelumbo nucifera HOM05D007718 ORTHO05D009752 1.0e-29 133.7 117 56.4
PSO170G0967 Papaver somniferum HOM05D007718 ORTHO05D009752 1.3e-29 133.3 129 56.6
Thecc.08G178100 Theobroma cacao HOM05D007718 ORTHO05D009752 5.1e-29 131.3 98 62.2
FvH4_2g00852 Fragaria vesca HOM05D007718 ORTHO05D009752 1.5e-28 129.8 70 92.9
Actinidia04142 Actinidia chinensis HOM05D007718 ORTHO05D009752 1.9e-28 129.4 104 58.7
Rhsim01G0004700 Rhododendron simsii HOM05D007718 ORTHO05D009752 1.9e-28 129.4 107 60.7
Gohir.A08G230000 Gossypium hirsutum HOM05D007718 ORTHO05D009752 1.2e-27 126.7 89 67.4
CiPaw.04G009400 Carya illinoinensis HOM05D007718 ORTHO05D009752 1.6e-27 126.3 114 57.9
Manes.02G201400 Manihot esculenta HOM05D007718 ORTHO05D009752 3.6e-27 125.2 126 54.0
Gohir.D08G250400 Gossypium hirsutum HOM05D007718 ORTHO05D009752 4.7e-27 124.8 89 66.3
Gorai.004G267100 Gossypium raimondii HOM05D007718 ORTHO05D009752 4.7e-27 124.8 89 66.3
Sed0001698 Sechium edule HOM05D007718 ORTHO05D009752 4.7e-27 124.8 88 69.3
Ciclev10022933m.g Citrus clementina HOM05D007718 ORTHO05D009752 6.2e-27 124.4 103 61.2
Manes.02G205384 Manihot esculenta HOM05D007718 ORTHO05D009752 1.4e-26 123.2 126 52.4
EL10Ac1g01266 Beta vulgaris HOM05D007718 ORTHO05D009752 1.8e-26 122.9 108 55.6
Manes.02G221600 Manihot esculenta HOM05D007718 ORTHO05D009752 2.4e-26 122.5 126 53.2
Manes.02G201100 Manihot esculenta HOM05D007718 ORTHO05D009752 5.2e-26 121.3 126 52.4
Ca_07513_v3 Cicer arietinum L. HOM05D007718 ORTHO05D009752 8.9e-26 120.6 125 55.2
MELO3C022171.2 Cucumis melo HOM05D007718 ORTHO05D009752 1.2e-25 120.2 93 63.4
Potri.019G071800 Populus trichocarpa HOM05D007718 ORTHO05D009752 1.2e-25 120.2 109 56.9
ClCG08G001110 Citrullus lanatus HOM05D007718 ORTHO05D009752 1.5e-25 119.8 106 56.6
Aqoxy5G00833 Aquilegia oxysepala HOM05D007718 ORTHO05D009752 2.6e-25 119.0 101 59.4
Duzib177G0547 Durio zibethinus HOM05D007718 ORTHO05D009752 2.6e-25 119.0 86 65.1
Phvul.008G126000 Phaseolus vulgaris HOM05D007718 ORTHO05D009752 4.4e-25 118.2 126 56.3
Atru.chr13.2493 Acer truncatum HOM05D007718 ORTHO05D009752 5.8e-25 117.9 102 54.9
Migut.C01378 Erythranthe guttata HOM05D007718 ORTHO05D009752 5.8e-25 117.9 122 49.2
Lalb_Chr03g0041731 Lupinus albus HOM05D007718 ORTHO05D009752 5.8e-25 117.9 109 57.8
Atru.chr13.2505 Acer truncatum HOM05D007718 ORTHO05D009752 7.6e-25 117.5 100 57.0
arahy.Tifrunner.gnm1.ann1.KNF5LM Arachis hypogaea HOM05D007718 ORTHO05D009752 1.3e-24 116.7 120 52.5
Medtr7g057760 Medicago truncatula HOM05D007718 ORTHO05D009752 1.3e-24 116.7 103 59.2
MSTRG.1597 Avicennia marina HOM05D007718 ORTHO05D009752 1.7e-24 116.3 90 58.9
Ah.05g170340 Amaranthus hybridus HOM05D007718 ORTHO05D009752 2.2e-24 115.9 115 49.6
COL.COLO4_05200 Corchorus olitorius HOM05D007718 ORTHO05D009752 2.9e-24 115.5 93 58.1
TPR.G23283 Trifolium pratense HOM05D007718 ORTHO05D009752 2.9e-24 115.5 97 60.8
ECA232G2296 Erigeron canadensis HOM05D005243 ORTHO05D006670 8.4e-24 114.0 100 55.0
arahy.Tifrunner.gnm1.ann1.NNV5AG Arachis hypogaea HOM05D007718 ORTHO05D009752 1.1e-23 113.6 125 51.2
SGA_v2.0_scaffold24G10646 Striga asiatica HOM05D007718 ORTHO05D009752 1.1e-23 113.6 85 60.0
TAR383G0451 Trochodendron aralioides HOM05D007718 ORTHO05D009752 1.1e-23 113.6 80 67.5
Glyma.08G353800 Glycine max HOM05D007718 ORTHO05D009752 3.2e-23 112.1 125 52.0
CDE04G1586 Ceratophyllum demersum HOM05D007718 ORTHO05D009752 1.6e-22 109.8 93 57.0
FAN24G0504 Fragaria x ananassa HOM05D007718 ORTHO05D009752 6.6e-21 104.4 76 78.9
FAN20G0290 Fragaria x ananassa HOM05D005243 ORTHO05D009752 1.1e-20 103.6 57 89.5
HanXRQChr09g0267041 Helianthus annuus HOM05D007718 ORTHO05D009752 2.5e-20 102.4 107 50.5
Lsat_1_v5_gn_3_36061 Lactuca sativa HOM05D007718 ORTHO05D009752 2.5e-20 102.4 90 55.6
THA.LOC104807782 Tarenaya hassleriana HOM05D007718 ORTHO05D009752 4.3e-20 101.7 88 55.7
AUR62038531 Chenopodium quinoa HOM05D007718 ORTHO05D009752 4.8e-19 98.2 81 56.8
Nn5g31449 Nelumbo nucifera HOM05D007718 ORTHO05D009752 1.8e-18 96.3 62 72.6
unitig_26.g9859 Utricularia gibba HOM05D007718 ORTHO05D009752 2.4e-18 95.9 80 57.5
HPP92_012514 Vanilla planifolia HOM05D007718 ORTHO05D009752 1.2e-17 93.6 120 43.3
C04p50420 Brassica napus HOM05D007718 ORTHO05D009752 4.4e-17 91.7 62 67.7
BolC4t26639H Brassica oleracea HOM05D007718 ORTHO05D009752 4.4e-17 91.7 62 67.7
CSS0008152 Camellia sinensis var. sinensis HOM05D007718 ORTHO05D009752 4.4e-17 91.7 58 70.7
ATR1089G029 Amborella trichopoda HOM05D007718 ORTHO05D009752 7.6e-17 90.9 112 43.8
CARHR112060 Cardamine hirsuta HOM05D007718 ORTHO05D009752 9.9e-17 90.5 90 48.9
AL4G10300 Arabidopsis lyrata HOM05D007718 ORTHO05D009752 2.2e-16 89.4 68 60.3
AT2G21195 Arabidopsis thaliana HOM05D007718 ORTHO05D009752 2.2e-16 89.4 68 55.9
Thhalv10000395m.g Eutrema salsugineum HOM05D007718 ORTHO05D009752 2.9e-16 89.0 61 68.9
Carub.0004s0023 Capsella rubella HOM05D007718 ORTHO05D009752 1.1e-15 87.0 69 55.1
vmacro13123 Vaccinium macrocarpon HOM05D007718 ORTHO05D009752 1.4e-15 86.7 74 59.5
A04p15950 Brassica napus HOM05D007718 ORTHO05D009752 1.9e-15 86.3 61 62.3
BraA04t17231Z Brassica rapa HOM05D007718 ORTHO05D009752 3.2e-15 85.5 50 72.0
Peaxi162Scf00048g00419 Petunia axillaris HOM05D007718 ORTHO05D009752 4.2e-15 85.1 61 67.2
Lj1g0018023 Lotus japonicus HOM05D007718 ORTHO05D009752 9.3e-15 84.0 95 52.6
Psat3g145480 Pisum sativum HOM05D007718 ORTHO05D009752 9.3e-15 84.0 73 56.2
SEGI_14522 Sequoiadendron giganteum HOM05D007718 ORTHO05D009752 1.6e-14 83.2 75 54.7
Os07g0265100 Oryza sativa ssp. japonica HOM05D007718 ORTHO05D009752 2.1e-14 82.8 98 42.9
Oeu020544.1 Olea europaea HOM05D007718 ORTHO05D009752 2.7e-14 82.4 163 34.4
Cc10_g08650 Coffea canephora HOM05D007718 ORTHO05D009752 1.0e-13 80.5 79 46.8
SalBow7G2847 Salvia bowleyana HOM05D007718 ORTHO05D009752 1.3e-13 80.1 138 34.8
AagrBONN_evm.TU.Sc2ySwM_344.3280 Anthoceros agrestis HOM05D007718 ORTHO05D009752 3.3e-12 75.5 125 36.0
Zm00001eb304750 Zea mays HOM05D007718 ORTHO05D009752 7.4e-12 74.3 71 42.3
BcaC02g08810 Brassica carinata HOM05D007718 ORTHO05D009752 5.3e-10 68.2 31 90.3
Mapoly0002s0003 Marchantia polymorpha HOM05D007718 ORTHO05D009752 3.4e-09 65.5 88 38.6
Aa31sc115G10 Aethionema arabicum HOM05D007718 ORTHO05D009752 1.7e-08 63.2 48 62.5
VMungo1383G3332 Vigna mungo HOM05D000479 ORTHO05D001285 2.9e-08 62.4 36 77.8
Aa31LG7G15310 Aethionema arabicum HOM05D007718 ORTHO05D009752 3.8e-08 62.0 48 60.4


User provided reference genes

Program Settings