Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN27G3244 Fragaria x ananassa HOM05D005711 ORTHO05D007125 0.0e+00 1751.9 896 100.0
FAN20G1206 Fragaria x ananassa HOM05D005711 ORTHO05D007125 0.0e+00 1658.7 881 96.1
FAN15G2563 Fragaria x ananassa HOM05D005711 ORTHO05D007125 0.0e+00 1649.4 881 95.7
FAN24G0778 Fragaria x ananassa HOM05D005711 ORTHO05D007125 0.0e+00 1634.8 881 95.3
FvH4_2g02670 Fragaria vesca HOM05D005711 ORTHO05D007125 0.0e+00 1631.7 881 95.2
RcHm_v2.0_Chr7g0177161 Rosa chinensis HOM05D005711 ORTHO05D007125 0.0e+00 1511.1 881 88.0
RcHm_v2.0_Chr6g0247071 Rosa chinensis HOM05D005711 ORTHO05D007125 0.0e+00 1504.2 881 87.7
Prupe.8G156400 Prunus persica HOM05D005711 ORTHO05D007125 0.0e+00 1263.4 881 72.4
MD05G1111300 Malus domestica HOM05D005711 ORTHO05D007125 0.0e+00 1250.0 887 72.0
FvH4_7g07942 Fragaria vesca HOM05D005711 ORTHO05D007125 6.3e-307 1057.4 617 88.5
CiPaw.09G035700 Carya illinoinensis HOM05D005711 ORTHO05D007125 4.6e-302 1041.2 866 61.2
QL07p021385 Quercus lobata HOM05D005711 ORTHO05D007125 2.7e-294 1015.4 892 59.9
Thecc.05G160700 Theobroma cacao HOM05D005711 ORTHO05D007125 8.8e-293 1010.4 873 59.3
Cfa016851 Carpinus fangiana HOM05D005711 ORTHO05D007125 7.0e-290 1000.7 821 61.5
CANSAT80G2574 Cannabis sativa HOM05D005711 ORTHO05D007125 5.0e-288 994.6 868 59.0
TAR633G2044 Trochodendron aralioides HOM05D005711 ORTHO05D007125 1.3e-283 979.9 879 58.6
GSVIVG01033319001 Vitis vinifera HOM05D005711 ORTHO05D007125 1.4e-282 976.5 877 57.8
TWI53G1199 Tripterygium wilfordii HOM05D005711 ORTHO05D007125 3.5e-281 971.8 867 58.1
Dinv24132 Davidia involucrata HOM05D005711 ORTHO05D007125 1.5e-279 966.5 894 56.8
Ciclev10004212m.g Citrus clementina HOM05D005711 ORTHO05D007125 1.9e-279 966.1 866 57.6
Gorai.002G230200 Gossypium raimondii HOM05D005711 ORTHO05D007125 2.4e-274 949.1 871 56.5
Gohir.D01G186800 Gossypium hirsutum HOM05D005711 ORTHO05D007125 1.2e-273 946.8 870 56.8
Potri.006G054100 Populus trichocarpa HOM05D005711 ORTHO05D007125 2.0e-273 946.0 872 56.3
Haze_19901 Corylus avellana HOM05D005711 ORTHO05D007125 4.5e-273 944.9 862 57.7
Gohir.A01G196500 Gossypium hirsutum HOM05D005711 ORTHO05D007125 5.0e-272 941.4 871 56.3
Lj1g0025810 Lotus japonicus HOM05D005711 ORTHO05D007125 5.0e-272 941.4 872 55.3
Manes.09G026800 Manihot esculenta HOM05D005711 ORTHO05D007125 3.7e-267 925.2 870 55.3
Actinidia09354 Actinidia chinensis HOM05D005711 ORTHO05D007125 1.4e-266 923.3 872 55.2
Glyma.19G141900 Glycine max HOM05D005711 ORTHO05D007125 3.1e-266 922.2 877 55.4
Psat3g071760 Pisum sativum HOM05D005711 ORTHO05D007125 1.6e-265 919.8 870 54.3
Medtr7g092130 Medicago truncatula HOM05D005711 ORTHO05D007125 1.1e-263 913.7 868 54.0
Phvul.001G135900 Phaseolus vulgaris HOM05D005711 ORTHO05D007125 1.0e-261 907.1 876 55.3
Ca_08477_v3 Cicer arietinum L. HOM05D005711 ORTHO05D007125 3.0e-261 905.6 869 53.6
VMungo1383G1829 Vigna mungo HOM05D005711 ORTHO05D007125 3.0e-261 905.6 877 54.5
CSS0036262 Camellia sinensis var. sinensis HOM05D005711 ORTHO05D007125 8.9e-261 904.0 884 55.2
CsaV3_4G031330 Cucumis sativus L. HOM05D005711 ORTHO05D007125 1.1e-258 897.1 876 53.8
Lalb_Chr20g0110821 Lupinus albus HOM05D005711 ORTHO05D007125 4.6e-257 891.7 865 54.0
Sed0005844 Sechium edule HOM05D005711 ORTHO05D007125 1.7e-251 873.2 874 53.4
arahy.Tifrunner.gnm1.ann1.7A57YA Arachis hypogaea HOM05D005711 ORTHO05D007125 4.1e-250 868.6 873 52.9
arahy.Tifrunner.gnm1.ann1.FZG2LY Arachis hypogaea HOM05D005711 ORTHO05D007125 1.2e-249 867.1 872 53.1
Atru.chr1.1044 Acer truncatum HOM05D005711 ORTHO05D007125 3.9e-248 862.1 763 57.9
TPR.G3825 Trifolium pratense HOM05D005711 ORTHO05D007125 3.9e-248 862.1 822 53.4
Nn7g36123 Nelumbo nucifera HOM05D005711 ORTHO05D007125 6.6e-248 861.3 872 52.3
MELO3C009042.2 Cucumis melo HOM05D005711 ORTHO05D007125 3.4e-244 849.0 894 52.6
Duzib093G0922 Durio zibethinus HOM05D005711 ORTHO05D007125 2.9e-243 845.9 870 53.4
HanXRQChr13g0390691 Helianthus annuus HOM05D005711 ORTHO05D007125 2.3e-240 836.3 873 50.3
Sc25g0005260 Simmondsia chinensis HOM05D005711 ORTHO05D007125 8.9e-237 824.3 873 51.7
Migut.J01777 Erythranthe guttata HOM05D005711 ORTHO05D007125 1.7e-235 820.1 898 48.7
AL5G39150 Arabidopsis lyrata HOM05D005711 ORTHO05D007125 2.4e-234 816.2 867 49.5
Cc06_g17000 Coffea canephora HOM05D005711 ORTHO05D007125 4.1e-234 815.5 866 50.9
AT3G57570 Arabidopsis thaliana HOM05D005711 ORTHO05D007125 9.2e-234 814.3 866 49.4
ECA248G2859 Erigeron canadensis HOM05D005711 ORTHO05D007125 2.3e-232 809.7 884 49.1
Sp5g05020 Schrenkiella parvula HOM05D005711 ORTHO05D007125 5.1e-232 808.5 866 50.5
MSTRG.6443 Avicennia marina HOM05D005711 ORTHO05D007125 5.6e-231 805.1 895 47.2
THA.LOC104802271 Tarenaya hassleriana HOM05D005711 ORTHO05D007125 2.1e-230 803.1 891 48.9
PGR004G1983 Punica granatum HOM05D005711 ORTHO05D007125 1.1e-229 800.8 794 53.4
Thhalv10005777m.g Eutrema salsugineum HOM05D005711 ORTHO05D007125 2.4e-229 799.7 865 49.9
C08p33160 Brassica napus HOM05D005711 ORTHO05D007125 3.4e-228 795.8 868 49.7
BolC8t50918H Brassica oleracea HOM05D005711 ORTHO05D007125 3.4e-228 795.8 868 49.7
PSO782G5466 Papaver somniferum HOM05D005711 ORTHO05D007125 3.4e-228 795.8 877 49.6
A09p50460 Brassica napus HOM05D005711 ORTHO05D007125 1.7e-227 793.5 870 49.3
BraA09t40497Z Brassica rapa HOM05D005711 ORTHO05D007125 2.2e-227 793.1 868 49.3
Aqoxy7G01800 Aquilegia oxysepala HOM05D005711 ORTHO05D007125 1.2e-225 787.3 888 48.9
Carub.0005s2441 Capsella rubella HOM05D005711 ORTHO05D007125 2.1e-225 786.6 866 48.3
Oeu018003.1 Olea europaea HOM05D005711 ORTHO05D007125 2.7e-225 786.2 875 48.1
BcaC07g40362 Brassica carinata HOM05D005711 ORTHO05D007125 1.9e-218 763.5 906 46.8
SGA_v2.0_scaffold69G23097 Striga asiatica HOM05D005711 ORTHO05D007125 3.5e-217 759.2 901 45.8
Lj2C380T2 Lonicera japonica HOM05D005711 ORTHO05D007125 9.3e-210 734.6 720 56.2
Aa31LG10G12390 Aethionema arabicum HOM05D005711 ORTHO05D007125 2.4e-205 719.9 865 46.0
COL.COLO4_28164 Corchorus olitorius HOM05D005711 ORTHO05D007125 2.4e-205 719.9 735 53.3
Cpa.g.sc92.19 Carica papaya HOM05D005711 ORTHO05D007125 7.6e-204 714.9 617 58.8
AUR62026001 Chenopodium quinoa HOM05D005711 ORTHO05D007125 3.5e-201 706.1 873 45.6
SalBow6G5243 Salvia bowleyana HOM05D005711 ORTHO05D007125 3.0e-200 703.0 894 43.1
EL10Ac3g07027 Beta vulgaris HOM05D005711 ORTHO05D007125 2.4e-197 693.3 885 44.4
CARHR167800 Cardamine hirsuta HOM05D005711 ORTHO05D007125 2.4e-197 693.3 766 48.4
Rhsim03G0016500 Rhododendron simsii HOM05D005711 ORTHO05D007125 1.5e-196 690.6 719 53.7
vmacro22370 Vaccinium macrocarpon HOM05D005711 ORTHO05D007125 5.0e-195 685.6 795 49.6
Ah.13g076290 Amaranthus hybridus HOM05D005711 ORTHO05D007125 2.5e-194 683.3 925 42.3
Lsat_1_v5_gn_5_162580 Lactuca sativa HOM05D005711 ORTHO05D007125 5.1e-192 675.6 866 43.3
CDE10G0401 Ceratophyllum demersum HOM05D005711 ORTHO05D007125 1.5e-191 674.1 886 42.3
DCAR_009055 Daucus carota HOM05D005711 ORTHO05D007125 2.8e-190 669.8 884 43.2
ATR0605G192 Amborella trichopoda HOM05D005711 ORTHO05D007125 4.6e-185 652.5 882 42.0
Rhsim03G0017400 Rhododendron simsii HOM05D005711 ORTHO05D007125 2.2e-171 607.1 929 42.5
Peaxi162Scf00650g00112 Petunia axillaris HOM05D005711 ORTHO05D007125 1.8e-165 587.4 874 39.0
ClCG04G000850 Citrullus lanatus HOM05D005711 ORTHO05D007125 5.7e-143 512.7 704 42.9
Eucgr.A02387 Eucalyptus grandis HOM05D005711 ORTHO05D007125 1.2e-137 495.0 504 53.2
FAN01G1916 Fragaria x ananassa HOM05D005711 ORTHO05D007125 3.0e-131 473.8 248 94.4
Mapoly0169s0013 Marchantia polymorpha HOM05D005711 ORTHO05D007125 2.5e-122 444.1 914 30.9
Pp3c13_4080 Physcomitrium patens HOM05D005711 ORTHO05D007125 9.6e-114 415.6 878 32.2
AUR62024408 Chenopodium quinoa HOM05D005711 ORTHO05D007125 1.7e-107 394.8 520 43.3
Nitab4.5_0002510g0050 Nicotiana tabacum HOM05D005711 ORTHO05D007125 4.3e-106 390.2 877 30.7
vmacro07877 Vaccinium macrocarpon HOM05D005711 ORTHO05D007125 2.6e-103 380.9 339 60.2
Thecc.05G160900 Theobroma cacao HOM05D005711 ORTHO05D007125 2.5e-98 364.4 339 59.0
Rhsim03G0014800 Rhododendron simsii HOM05D005711 ORTHO05D007125 1.5e-90 338.6 593 39.0
Dinv01671 Davidia involucrata HOM05D005711 ORTHO05D007125 3.0e-67 261.2 281 48.8
ClCG04G000840 Citrullus lanatus HOM05D005711 ORTHO05D007125 5.2e-59 233.8 224 55.8
AUR62024409 Chenopodium quinoa HOM05D005711 ORTHO05D007125 1.5e-58 232.3 360 38.1
Rhsim05G0135200 Rhododendron simsii HOM05D005711 ORTHO05D007125 1.5e-58 232.3 1005 25.4
Rhsim03G0016100 Rhododendron simsii HOM05D005711 ORTHO05D007125 9.1e-56 223.0 245 49.8
SEGI_36353 Sequoiadendron giganteum HOM05D005711 ORTHO05D007125 1.6e-52 212.2 261 47.9
FvH4_7g07943 Fragaria vesca HOM05D005711 ORTHO05D007125 3.1e-48 198.0 130 83.8
FAN06G4049 Fragaria x ananassa HOM05D005711 ORTHO05D007125 1.6e-47 195.7 130 83.1
Rhsim03G0097300 Rhododendron simsii HOM05D005711 ORTHO05D007125 2.0e-47 195.3 365 38.1
FAN10G0844 Fragaria x ananassa HOM05D005711 ORTHO05D007125 3.5e-47 194.5 130 83.1
Cpa.g.sc92.20 Carica papaya HOM05D005711 ORTHO05D010193 2.9e-46 191.4 184 50.5
PGSC0003DMG401011958 Solanum tuberosum HOM05D005711 ORTHO05D007125 3.6e-44 184.5 204 48.0
Lj2A380T68 Lonicera japonica HOM05D005711 ORTHO05D007125 4.8e-41 174.1 198 44.4
COL.COLO4_28165 Corchorus olitorius HOM05D005711 ORTHO05D007125 6.3e-41 173.7 148 55.4
Hma1.2p1_0247F.1_g101860 Hydrangea macrophylla HOM05D005711 ORTHO05D007125 5.4e-40 170.6 158 50.6
Nitab4.5_0010669g0020 Nicotiana tabacum HOM05D005711 ORTHO05D007125 4.4e-34 151.0 497 28.0
FAN26G1840 Fragaria x ananassa HOM05D005711 ORTHO05D007125 1.9e-29 135.6 131 56.5
vmacro07878 Vaccinium macrocarpon HOM05D005711 ORTHO05D007125 5.2e-27 127.5 121 54.5
CARHR167810 Cardamine hirsuta HOM05D005711 ORTHO05D007125 4.9e-25 120.9 105 56.2
Solyc03g063700.1 Solanum lycopersicum HOM05D005711 ORTHO05D007125 1.9e-24 119.0 93 57.0
Nitab4.5_0010669g0030 Nicotiana tabacum HOM05D005711 ORTHO05D007125 2.9e-17 95.1 161 37.9
FAN04G1389 Fragaria x ananassa HOM05D005711 ORTHO05D007125 1.9e-16 92.4 50 94.0
CBR_g41427 Chara braunii HOM05D005711 ORTHO05D007125 4.6e-15 87.8 184 30.4
Rhsim03G0016400 Rhododendron simsii HOM05D005711 ORTHO05D007125 4.6e-15 87.8 83 60.2
CBR_g41430 Chara braunii HOM05D000019 ORTHO05D000048 6.0e-15 87.4 233 27.9
Nitab4.5_0005201g0010 Nicotiana tabacum HOM05D005711 ORTHO05D007125 1.3e-14 86.3 64 59.4
SEGI_21308 Sequoiadendron giganteum HOM05D005711 ORTHO05D007125 5.6e-13 80.9 85 45.9
PGSC0003DMG402011958 Solanum tuberosum HOM05D005711 ORTHO05D007125 6.2e-12 77.4 59 55.9
arahy.Tifrunner.gnm1.ann1.N4MAIX Arachis hypogaea HOM05D005711 ORTHO05D007125 4.0e-11 74.7 62 56.5
SEGI_00323 Sequoiadendron giganteum HOM05D005711 ORTHO05D007125 8.9e-11 73.6 66 50.0
Hma1.2p1_0247F.1_g101870 Hydrangea macrophylla HOM05D005711 ORTHO05D007125 1.9e-08 65.9 94 38.3
Thecc.05G161000 Theobroma cacao HOM05D005711 ORTHO05D007125 3.5e-07 61.6 43 67.4
SMO356G0176 Selaginella moellendorffii HOM05D005711 ORTHO05D007125 6.0e-07 60.8 61 45.9
MCO09G818 Micromonas commoda HOM05D005711 ORTHO05D007125 7.8e-07 60.5 344 20.3


User provided reference genes

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