Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN27G3126 Fragaria x ananassa HOM05D005213 ORTHO05D006229 9.0e-216 753.4 415 100.0
FvH4_2g37040 Fragaria vesca HOM05D005213 ORTHO05D006229 4.5e-207 724.5 415 96.9
FAN20G0215 Fragaria x ananassa HOM05D005213 ORTHO05D006229 7.6e-207 723.8 415 96.4
FAN15G1397 Fragaria x ananassa HOM05D005213 ORTHO05D006229 4.0e-200 701.4 417 93.8
RcHm_v2.0_Chr6g0304741 Rosa chinensis HOM05D005213 ORTHO05D006229 2.7e-196 688.7 415 91.3
Prupe.1G401300 Prunus persica HOM05D005213 ORTHO05D006229 6.8e-147 524.6 435 72.2
MD08G1046900 Malus domestica HOM05D005213 ORTHO05D006229 2.3e-126 456.4 442 66.3
MD15G1047100 Malus domestica HOM05D005213 ORTHO05D006229 8.9e-123 444.5 433 64.0
Cfa023359 Carpinus fangiana HOM05D005213 ORTHO05D006229 5.1e-110 402.1 437 59.5
Ciclev10008490m.g Citrus clementina HOM05D005213 ORTHO05D006229 1.6e-108 397.1 436 60.8
Thecc.09G066400 Theobroma cacao HOM05D005213 ORTHO05D006229 2.8e-108 396.4 439 62.9
TAR624G0676 Trochodendron aralioides HOM05D005213 ORTHO05D006229 2.6e-106 389.8 422 57.3
Manes.16G087800 Manihot esculenta HOM05D005213 ORTHO05D006229 4.9e-105 385.6 437 57.9
CiPaw.16G068600 Carya illinoinensis HOM05D005213 ORTHO05D006229 4.2e-104 382.5 441 56.9
Cpa.g.sc82.19 Carica papaya HOM05D005213 ORTHO05D006229 5.4e-104 382.1 423 59.1
Haze_13552 Corylus avellana HOM05D005213 ORTHO05D006229 6.0e-103 378.6 438 57.3
Potri.006G217900 Populus trichocarpa HOM05D005213 ORTHO05D006229 6.0e-103 378.6 445 58.7
TWI34G0479 Tripterygium wilfordii HOM05D005213 ORTHO05D006229 5.1e-102 375.6 436 55.5
Duzib187G1454 Durio zibethinus HOM05D005213 ORTHO05D006229 4.3e-101 372.5 434 57.8
Gorai.009G039700 Gossypium raimondii HOM05D005213 ORTHO05D006229 2.8e-100 369.8 442 56.3
Gohir.D05G039200 Gossypium hirsutum HOM05D005213 ORTHO05D006229 5.3e-99 365.5 444 55.4
COL.COLO4_21169 Corchorus olitorius HOM05D005213 ORTHO05D006229 6.9e-99 365.2 455 60.4
Eucgr.C00749 Eucalyptus grandis HOM05D005213 ORTHO05D006229 5.6e-93 345.5 443 58.5
Dinv41845 Davidia involucrata HOM05D005213 ORTHO05D006229 1.4e-91 340.9 472 57.0
Cc08_g07800 Coffea canephora HOM05D005213 ORTHO05D006229 1.2e-90 337.8 432 54.4
Duzib168G1397 Durio zibethinus HOM05D005213 ORTHO05D006229 7.9e-87 325.1 425 50.1
Manes.03G055700 Manihot esculenta HOM05D005213 ORTHO05D006229 7.9e-87 325.1 407 54.3
Duzib150G1003 Durio zibethinus HOM05D005213 ORTHO05D006229 8.7e-86 321.6 393 56.0
MBI19_g18107_MAGBIO Magnolia biondii HOM05D004195 ORTHO05D005309 7.4e-85 318.5 448 53.1
Migut.A00332 Erythranthe guttata HOM05D005213 ORTHO05D006229 9.6e-85 318.2 444 50.2
TWI32G0481 Tripterygium wilfordii HOM05D005213 ORTHO05D006229 6.2e-84 315.5 449 48.6
Nn8g38551 Nelumbo nucifera HOM05D005213 ORTHO05D006229 4.0e-83 312.8 446 52.7
Glyma.04G057900 Glycine max HOM05D005213 ORTHO05D006229 2.0e-82 310.5 428 50.5
Peaxi162Scf00922g00016 Petunia axillaris HOM05D005213 ORTHO05D006229 2.6e-82 310.1 430 50.7
Gorai.010G094100 Gossypium raimondii HOM05D005213 ORTHO05D006229 7.6e-82 308.5 430 49.3
Gohir.D06G080700 Gossypium hirsutum HOM05D005213 ORTHO05D006229 6.5e-81 305.4 430 48.8
Glyma.06G058600 Glycine max HOM05D005213 ORTHO05D006229 1.4e-80 304.3 419 50.6
Ca_15799_v3 Cicer arietinum L. HOM05D005213 ORTHO05D006229 2.7e-79 300.1 428 47.9
Gohir.A06G081000 Gossypium hirsutum HOM05D005213 ORTHO05D006229 9.6e-77 291.6 430 47.4
VMungo1309G2063 Vigna mungo HOM05D005213 ORTHO05D006229 3.7e-76 289.7 405 49.9
Nn6g35650 Nelumbo nucifera HOM05D005213 ORTHO05D006229 8.2e-76 288.5 418 51.4
GSVIVG01035506001 Vitis vinifera HOM05D005213 ORTHO05D006229 1.8e-75 287.3 413 48.9
DCAR_001248 Daucus carota HOM05D005213 ORTHO05D006229 1.5e-74 284.3 427 46.4
Aqoxy7G04081 Aquilegia oxysepala HOM05D005213 ORTHO05D006229 2.2e-73 280.4 440 50.0
Phvul.009G084600 Phaseolus vulgaris HOM05D005213 ORTHO05D006229 1.4e-72 277.7 425 52.0
CSS0041342 Camellia sinensis var. sinensis HOM05D005213 ORTHO05D006229 1.9e-72 277.3 469 48.8
CAN.G1059.3 Capsicum annuum HOM05D005213 ORTHO05D006229 2.1e-71 273.9 429 46.9
PSO386G0069 Papaver somniferum HOM05D005213 ORTHO05D006229 2.7e-71 273.5 465 50.3
Medtr3g105580 Medicago truncatula HOM05D005213 ORTHO05D006229 4.6e-71 272.7 406 50.0
Nitab4.5_0000508g0090 Nicotiana tabacum HOM05D005213 ORTHO05D006229 6.1e-71 272.3 416 46.6
Haze_18367 Corylus avellana HOM05D005213 ORTHO05D006229 7.4e-69 265.4 413 45.5
Lj1g0011388 Lotus japonicus HOM05D005213 ORTHO05D006229 9.7e-69 265.0 419 46.5
Lalb_Chr11g0063421 Lupinus albus HOM05D005213 ORTHO05D006229 3.1e-67 260.0 384 48.4
Nitab4.5_0007212g0010 Nicotiana tabacum HOM05D005213 ORTHO05D006229 1.2e-66 258.1 418 45.7
Lj7P206T8 Lonicera japonica HOM05D005213 ORTHO05D006229 5.5e-64 249.2 335 49.0
Oeu020105.1 Olea europaea HOM05D005213 ORTHO05D006229 1.6e-63 247.7 418 44.7
TPR.G21422 Trifolium pratense HOM05D005213 ORTHO05D006229 1.8e-62 244.2 409 46.9
Cfa017841 Carpinus fangiana HOM05D005213 ORTHO05D006229 5.1e-62 242.7 372 47.6
PSO223G0037 Papaver somniferum HOM05D005213 ORTHO05D006229 8.8e-62 241.9 463 45.8
ATR0681G043 Amborella trichopoda HOM05D005213 ORTHO05D006229 4.4e-61 239.6 442 41.6
SGA_v2.0_scaffold22G09922 Striga asiatica HOM05D005213 ORTHO05D006229 4.4e-61 239.6 403 42.4
Rhsim04G0156600 Rhododendron simsii HOM05D005213 ORTHO05D006229 1.7e-60 237.7 438 44.3
TPR.G38861 Trifolium pratense HOM05D005213 ORTHO05D006229 1.4e-59 234.6 399 48.4
EL10Ac5g11257 Beta vulgaris HOM05D005213 ORTHO05D006229 2.4e-59 233.8 430 42.8
HanXRQChr08g0228011 Helianthus annuus HOM05D005213 ORTHO05D006229 5.9e-58 229.2 420 44.8
CDE05G3316 Ceratophyllum demersum HOM05D005213 ORTHO05D006229 1.9e-56 224.2 453 38.6
Hund02523 Selenicereus undatus HOM05D005213 ORTHO05D006229 2.5e-56 223.8 363 43.8
Lalb_Chr22g0349651 Lupinus albus HOM05D005213 ORTHO05D006229 4.2e-56 223.0 398 45.5
Psat5g033280 Pisum sativum HOM05D005213 ORTHO05D006229 1.6e-55 221.1 409 47.4
Medtr1g014750 Medicago truncatula HOM05D005213 ORTHO05D006229 2.0e-53 214.2 361 46.8
HanXRQChr03g0067421 Helianthus annuus HOM05D005213 ORTHO05D006229 9.7e-53 211.8 401 44.9
MSTRG.11768 Avicennia marina HOM05D005213 ORTHO05D006229 2.6e-50 203.8 318 46.2
Oeu022129.1 Olea europaea HOM05D005213 ORTHO05D006229 7.7e-50 202.2 320 44.4
PGR142G1942 Punica granatum HOM05D005213 ORTHO05D006229 1.3e-49 201.4 449 45.2
CANSAT25G2504 Cannabis sativa HOM05D005213 ORTHO05D006229 3.8e-49 199.9 422 44.1
THA.LOC104810950 Tarenaya hassleriana HOM05D005213 ORTHO05D006229 4.2e-48 196.4 403 40.9
Zm00001eb019450 Zea mays HOM05D005213 ORTHO05D006229 9.4e-48 195.3 467 41.1
ClCG08G009670 Citrullus lanatus HOM05D005213 ORTHO05D006229 1.2e-47 194.9 409 39.9
Hma1.2p1_0920F.1_g236590 Hydrangea macrophylla HOM05D005213 ORTHO05D006229 2.7e-47 193.7 414 44.0
ECA240G0440 Erigeron canadensis HOM05D005213 ORTHO05D006229 1.2e-45 188.3 411 36.5
CsaV3_6G031800 Cucumis sativus L. HOM05D005213 ORTHO05D006229 1.5e-45 188.0 440 34.1
ECA234G4818 Erigeron canadensis HOM05D005213 ORTHO05D006229 8.2e-44 182.2 403 41.2
AUR62032196 Chenopodium quinoa HOM05D005213 ORTHO05D006229 2.0e-42 177.6 429 35.4
HanXRQChr10g0309951 Helianthus annuus HOM05D005213 ORTHO05D006229 3.5e-42 176.8 409 39.6
vmacro08659 Vaccinium macrocarpon HOM05D005213 ORTHO05D006229 4.5e-42 176.4 351 45.3
Oeu030214.1 Olea europaea HOM05D005213 ORTHO05D006229 7.5e-37 159.1 410 38.5
Sed0001538 Sechium edule HOM05D005213 ORTHO05D006229 2.2e-36 157.5 353 40.5
Solyc08g067270.3 Solanum lycopersicum HOM05D005213 ORTHO05D006229 2.8e-36 157.1 219 44.7
Gohir.A05G037666 Gossypium hirsutum HOM05D005213 ORTHO05D006229 1.1e-35 155.2 183 51.4
AUR62036963 Chenopodium quinoa HOM05D005213 ORTHO05D006229 1.8e-35 154.5 418 31.1
Sc10g0009530 Simmondsia chinensis HOM05D005213 ORTHO05D006229 4.1e-35 153.3 398 33.4
Atru.chr7.1814 Acer truncatum HOM05D005213 ORTHO05D006229 7.7e-34 149.1 128 74.2
Ca_13089_v3 Cicer arietinum L. HOM05D005213 ORTHO05D006229 7.7e-34 149.1 315 39.7
CDE05G3450 Ceratophyllum demersum HOM05D005213 ORTHO05D006229 1.0e-33 148.7 413 32.2
Actinidia26432 Actinidia chinensis HOM05D005213 ORTHO05D006229 8.6e-33 145.6 132 57.6
MELO3C026560.2 Cucumis melo HOM05D005213 ORTHO05D006229 4.2e-32 143.3 351 34.2
Sopen08g021200 Solanum pennellii HOM05D005213 ORTHO05D006229 8.0e-31 139.0 116 60.3
Psat6g023400 Pisum sativum HOM05D005213 ORTHO05D006229 1.8e-30 137.9 381 36.2
HPP92_002168 Vanilla planifolia HOM05D006173 ORTHO05D007685 4.0e-30 136.7 334 36.2
SalBow8G0306 Salvia bowleyana HOM05D005213 ORTHO05D006229 9.2e-27 125.6 401 32.9
unitig_32.g10930 Utricularia gibba HOM05D005213 ORTHO05D006229 7.8e-26 122.5 339 36.6
CDE11G0900 Ceratophyllum demersum HOM05D005213 ORTHO05D006229 2.9e-25 120.6 330 37.3
Phvul.001G044400 Phaseolus vulgaris HOM05D005213 ORTHO05D006229 8.6e-25 119.0 389 29.8
Actinidia27819 Actinidia chinensis HOM05D005213 ORTHO05D006229 3.3e-24 117.1 125 64.8
Phvul.001G044200 Phaseolus vulgaris HOM05D005213 ORTHO05D006229 1.2e-23 115.2 319 32.3
Lalb_Chr08g0244621 Lupinus albus HOM05D005213 ORTHO05D006229 1.5e-21 108.2 110 51.8
C03p12080 Brassica napus HOM05D005213 ORTHO05D006229 3.4e-21 107.1 338 32.0
arahy.Tifrunner.gnm1.ann1.3D63PE Arachis hypogaea HOM05D005213 ORTHO05D006229 5.7e-21 106.3 308 34.1
AT5G21280 Arabidopsis thaliana HOM05D005213 ORTHO05D006229 9.8e-21 105.5 409 33.5
BcaC01g06616 Brassica carinata HOM05D005213 ORTHO05D006229 1.3e-20 105.1 338 32.0
BolC3t13679H Brassica oleracea HOM05D005213 ORTHO05D006229 1.3e-20 105.1 338 32.0
arahy.Tifrunner.gnm1.ann1.698XEU Arachis hypogaea HOM05D005213 ORTHO05D006229 4.1e-19 100.1 318 33.0
BraA03t10361Z Brassica rapa HOM05D005213 ORTHO05D006229 5.4e-19 99.8 385 29.4
BNapus_Darmor_BZH_scaffold_38p00940 Brassica napus HOM05D005213 ORTHO05D006229 9.2e-19 99.0 408 32.6
BraA02t05631Z Brassica rapa HOM05D005213 ORTHO05D006229 9.2e-19 99.0 408 32.6
HPP92_013274 Vanilla planifolia HOM05D005213 ORTHO05D006229 1.2e-18 98.6 337 30.6
Thhalv10014216m.g Eutrema salsugineum HOM05D005213 ORTHO05D006229 2.0e-18 97.8 409 35.9
BcaC03g13850 Brassica carinata HOM05D005213 ORTHO05D006229 1.3e-17 95.1 349 28.9
BolC2t07127H Brassica oleracea HOM05D005213 ORTHO05D006229 1.3e-17 95.1 349 28.9
ECA236G4272 Erigeron canadensis HOM05D005213 ORTHO05D006229 1.3e-17 95.1 317 30.6
VMungo0477G0001 Vigna mungo HOM05D005213 ORTHO05D006229 1.7e-17 94.7 437 28.6
Migut.E01467 Erythranthe guttata HOM05D005213 ORTHO05D006229 1.5e-16 91.7 422 28.2
HanXRQChr09g0261901 Helianthus annuus HOM05D005213 ORTHO05D006229 1.9e-16 91.3 170 39.4
Carub.0006s1962 Capsella rubella HOM05D005213 ORTHO05D006229 3.3e-16 90.5 398 34.4
BcaB05g22758 Brassica carinata HOM05D005213 ORTHO05D006229 4.3e-16 90.1 349 31.5
CARHR191550 Cardamine hirsuta HOM05D005213 ORTHO05D006229 7.3e-16 89.4 337 30.3
AL6G32940 Arabidopsis lyrata HOM05D005213 ORTHO05D006229 9.5e-16 89.0 395 33.2
CsaV3_4G036220 Cucumis sativus L. HOM05D005213 ORTHO05D006229 1.2e-15 88.6 340 29.7
Sp6g23210 Schrenkiella parvula HOM05D005213 ORTHO05D006229 1.6e-15 88.2 102 56.9
BcaB08g36461 Brassica carinata HOM05D005213 ORTHO05D006229 2.8e-15 87.4 421 28.3
Phvul.001G044300 Phaseolus vulgaris HOM05D005213 ORTHO05D006229 1.4e-14 85.1 195 38.5
Aa31LG1G13440 Aethionema arabicum HOM05D005213 ORTHO05D006229 1.8e-14 84.7 163 41.7
SGA_v2.0_scaffold4G02181 Striga asiatica HOM05D005213 ORTHO05D006229 2.3e-14 84.3 396 27.3
ClCG05G015950 Citrullus lanatus HOM05D005213 ORTHO05D006229 4.0e-14 83.6 338 30.2
SEGI_40729 Sequoiadendron giganteum HOM05D005213 ORTHO05D006229 6.8e-14 82.8 402 26.9
BraA10t43954Z Brassica rapa HOM05D005213 ORTHO05D006229 8.9e-14 82.4 347 32.6
MELO3C016931.2 Cucumis melo HOM05D005213 ORTHO05D006229 8.9e-14 82.4 339 28.3
A10p18740 Brassica napus HOM05D005213 ORTHO05D006229 5.8e-13 79.7 336 33.6
BcaB01g04752 Brassica carinata HOM05D005213 ORTHO05D006229 7.5e-13 79.3 45 91.1
C09p54690 Brassica napus HOM05D005213 ORTHO05D006229 7.5e-13 79.3 347 32.6
BolC9t58333H Brassica oleracea HOM05D005213 ORTHO05D006229 7.5e-13 79.3 347 32.6
BraA03t10362Z Brassica rapa HOM05D005213 ORTHO05D006229 1.7e-12 78.2 45 88.9
A03p10500 Brassica napus HOM05D005213 ORTHO05D006229 2.2e-12 77.8 93 54.8
BcaC04g19528 Brassica carinata HOM05D005213 ORTHO05D006229 1.9e-11 74.7 347 32.0
unitig_747.g21889 Utricularia gibba HOM05D005213 ORTHO05D006229 2.0e-10 71.2 221 32.6
Zm00001eb109280 Zea mays HOM05D005213 ORTHO05D006229 7.8e-10 69.3 321 27.7
HPP92_004172 Vanilla planifolia HOM05D001722 ORTHO05D001910 4.7e-07 60.1 72 40.3


User provided reference genes

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