Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN27G2989 Fragaria x ananassa HOM05D006293 ORTHO05D007971 2.2e-170 602.4 351 100.0
FvH4_2g01740 Fragaria vesca HOM05D006293 ORTHO05D007971 1.7e-162 576.2 359 95.5
FAN15G0431 Fragaria x ananassa HOM05D006293 ORTHO05D007971 2.2e-162 575.9 354 91.5
FAN24G1019 Fragaria x ananassa HOM05D006293 ORTHO05D007971 1.1e-161 573.5 362 95.3
FAN20G1949 Fragaria x ananassa HOM05D006293 ORTHO05D007971 7.7e-160 567.4 360 94.4
RcHm_v2.0_Chr6g0244771 Rosa chinensis HOM05D006293 ORTHO05D007971 6.1e-149 531.2 351 89.5
Prupe.8G161400 Prunus persica HOM05D006293 ORTHO05D007971 3.0e-127 459.1 354 76.6
QL11p047722 Quercus lobata HOM05D006293 ORTHO05D007971 4.9e-122 441.8 341 73.6
MD05G1116900 Malus domestica HOM05D006293 ORTHO05D007971 3.2e-121 439.1 345 78.6
Cfa005191 Carpinus fangiana HOM05D006293 ORTHO05D007971 8.6e-119 431.0 342 69.3
Haze_02189 Corylus avellana HOM05D006293 ORTHO05D007971 2.4e-113 412.9 342 69.0
CiPaw.05G077900 Carya illinoinensis HOM05D006293 ORTHO05D007971 2.1e-112 409.8 328 70.1
Potri.004G169200 Populus trichocarpa HOM05D006293 ORTHO05D007971 4.0e-108 395.6 341 66.3
TAR376G0811 Trochodendron aralioides HOM05D006293 ORTHO05D007971 4.0e-108 395.6 353 58.4
GSVIVG01024071001 Vitis vinifera HOM05D006293 ORTHO05D007971 1.5e-107 393.7 350 64.6
Rhsim11G0188600 Rhododendron simsii HOM05D006293 ORTHO05D007971 2.6e-107 392.9 349 64.5
Glyma.06G004900 Glycine max HOM05D006293 ORTHO05D007971 3.4e-107 392.5 344 64.0
Nn5g29105 Nelumbo nucifera HOM05D006293 ORTHO05D007971 3.4e-107 392.5 355 57.2
Glyma.04G005100 Glycine max HOM05D006293 ORTHO05D007971 9.9e-107 391.0 349 65.6
CANSAT25G1913 Cannabis sativa HOM05D006293 ORTHO05D007971 4.9e-106 388.7 355 65.4
Dinv04963 Davidia involucrata HOM05D006293 ORTHO05D007971 4.9e-106 388.7 343 65.6
VMungo1309G1166 Vigna mungo HOM05D006293 ORTHO05D007971 4.9e-106 388.7 349 62.8
Phvul.009G025500 Phaseolus vulgaris HOM05D006293 ORTHO05D007971 3.2e-105 386.0 350 64.0
Gorai.002G193700 Gossypium raimondii HOM05D006293 ORTHO05D007971 2.7e-104 382.9 342 61.4
vmacro02255 Vaccinium macrocarpon HOM05D006293 ORTHO05D007971 6.0e-104 381.7 348 63.5
Gohir.D01G156200 Gossypium hirsutum HOM05D006293 ORTHO05D007971 7.8e-104 381.3 342 61.1
Manes.11G090800 Manihot esculenta HOM05D006293 ORTHO05D007971 1.0e-103 380.9 342 65.2
COL.COLO4_17266 Corchorus olitorius HOM05D006293 ORTHO05D007971 6.6e-103 378.3 346 65.3
TWI31G0553 Tripterygium wilfordii HOM05D006293 ORTHO05D007971 8.7e-103 377.9 338 68.0
Duzib132G0283 Durio zibethinus HOM05D006293 ORTHO05D007971 2.5e-102 376.3 342 67.8
Gohir.A01G164300 Gossypium hirsutum HOM05D006293 ORTHO05D007971 5.6e-102 375.2 341 60.7
Thecc.02G066200 Theobroma cacao HOM05D006293 ORTHO05D007971 2.8e-101 372.9 341 64.5
Ca_15314_v3 Cicer arietinum L. HOM05D006293 ORTHO05D007971 4.8e-101 372.1 347 59.9
Ciclev10028711m.g Citrus clementina HOM05D006293 ORTHO05D007971 1.1e-100 370.9 353 70.0
CSS0030950 Camellia sinensis var. sinensis HOM05D006293 ORTHO05D007971 1.4e-100 370.5 350 64.0
Eucgr.G01761 Eucalyptus grandis HOM05D006293 ORTHO05D007971 6.9e-100 368.2 354 64.4
Rhsim11G0188500 Rhododendron simsii HOM05D006293 ORTHO05D007971 2.6e-99 366.3 392 55.1
TAR536G0014 Trochodendron aralioides HOM05D006293 ORTHO05D007971 2.9e-98 362.8 353 53.3
Lj1g0023631 Lotus japonicus HOM05D006293 ORTHO05D007971 1.1e-97 360.9 346 64.2
Medtr3g117760 Medicago truncatula HOM05D006293 ORTHO05D007971 1.9e-97 360.1 345 54.5
TAR628G0693 Trochodendron aralioides HOM05D006293 ORTHO05D007971 3.2e-97 359.4 357 54.1
TPR.G38570 Trifolium pratense HOM05D006293 ORTHO05D007971 1.6e-96 357.1 341 59.2
Cpa.g.sc37.182 Carica papaya HOM05D006293 ORTHO05D007971 3.5e-96 355.9 339 61.7
SGA_v2.0_scaffold32G13265 Striga asiatica HOM05D006293 ORTHO05D007971 3.0e-95 352.8 361 51.8
Peaxi162Scf00362g00956 Petunia axillaris HOM05D001375 ORTHO05D001222 6.6e-95 351.7 343 57.4
ClCG02G011620 Citrullus lanatus HOM05D006293 ORTHO05D007971 1.5e-94 350.5 350 58.3
Cc02_g16450 Coffea canephora HOM05D006293 ORTHO05D007971 1.5e-94 350.5 341 58.4
Oeu060421.1 Olea europaea HOM05D006293 ORTHO05D007971 4.8e-93 345.5 345 60.0
Psat5g003040 Pisum sativum HOM05D006293 ORTHO05D007971 1.8e-92 343.6 354 62.1
Oeu014457.2 Olea europaea HOM05D006293 ORTHO05D007971 2.4e-92 343.2 356 55.9
Nn1g05912 Nelumbo nucifera HOM05D006293 ORTHO05D007971 5.3e-92 342.0 353 55.2
Solyc01g111210.3 Solanum lycopersicum HOM05D001375 ORTHO05D001222 1.2e-91 340.9 341 51.0
PGSC0003DMG400001627 Solanum tuberosum HOM05D006293 ORTHO05D007971 1.5e-91 340.5 342 56.4
Lalb_Chr23g0265081 Lupinus albus HOM05D006293 ORTHO05D007971 3.4e-91 339.3 345 61.2
Sopen01g053260 Solanum pennellii HOM05D006293 ORTHO05D007971 1.3e-90 337.4 342 50.6
Migut.B00115 Erythranthe guttata HOM05D006293 ORTHO05D007971 2.9e-90 336.3 345 55.7
CAN.G588.32 Capsicum annuum HOM05D006293 ORTHO05D007971 3.8e-90 335.9 349 56.7
HanXRQChr17g0557851 Helianthus annuus HOM05D006293 ORTHO05D007971 5.4e-89 332.0 346 58.1
Sed0004865 Sechium edule HOM05D006293 ORTHO05D007971 1.2e-88 330.9 352 55.7
MSTRG.16884 Avicennia marina HOM05D006293 ORTHO05D007971 1.3e-87 327.4 365 55.9
Hund06410 Selenicereus undatus HOM05D006293 ORTHO05D007971 1.5e-86 323.9 357 55.5
THA.LOC104804336 Tarenaya hassleriana HOM05D006293 ORTHO05D007971 9.6e-86 321.2 343 52.5
Lj5C183T16 Lonicera japonica HOM05D006293 ORTHO05D007971 1.8e-84 317.0 343 57.1
Lsat_1_v5_gn_8_126000 Lactuca sativa HOM05D006293 ORTHO05D007971 2.4e-84 316.6 350 49.7
EL10Ac9g21428 Beta vulgaris HOM05D006293 ORTHO05D007971 4.0e-84 315.8 350 55.7
Dinv41970 Davidia involucrata HOM05D006293 ORTHO05D007971 6.9e-84 315.1 297 54.5
Nitab4.5_0000980g0060 Nicotiana tabacum HOM05D001375 ORTHO05D001222 9.0e-84 314.7 340 54.7
MELO3C020791.2 Cucumis melo HOM05D006293 ORTHO05D007971 2.6e-83 313.2 330 57.0
PSO170G2363 Papaver somniferum HOM05D006293 ORTHO05D007971 3.8e-82 309.3 366 59.8
BcaC04g23011 Brassica carinata HOM05D006293 ORTHO05D007971 5.5e-81 305.4 352 55.1
BolC9t54199H Brassica oleracea HOM05D006293 ORTHO05D007971 5.5e-81 305.4 352 55.1
Sc14g0002130 Simmondsia chinensis HOM05D006293 ORTHO05D007971 5.5e-81 305.4 339 52.2
ATR0810G191 Amborella trichopoda HOM05D006293 ORTHO05D007971 7.1e-81 305.1 340 49.1
C09p13060 Brassica napus HOM05D006293 ORTHO05D007971 2.1e-80 303.5 352 54.8
AL3G49260 Arabidopsis lyrata HOM05D006293 ORTHO05D007971 2.7e-80 303.1 345 58.3
BcaC06g36161 Brassica carinata HOM05D006293 ORTHO05D007971 6.0e-80 302.0 347 57.1
C07p07090 Brassica napus HOM05D006293 ORTHO05D007971 6.0e-80 302.0 347 57.1
BolC7t41128H Brassica oleracea HOM05D006293 ORTHO05D007971 6.0e-80 302.0 347 57.1
BraA07t28238Z Brassica rapa HOM05D006293 ORTHO05D007971 6.0e-80 302.0 347 57.1
CARHR106850 Cardamine hirsuta HOM05D006293 ORTHO05D007971 1.3e-79 300.8 353 50.1
A07p04460 Brassica napus HOM05D006293 ORTHO05D007971 3.0e-79 299.7 347 56.5
Sp3g30120 Schrenkiella parvula HOM05D006293 ORTHO05D007971 3.9e-79 299.3 351 59.5
Carub.0003s3038 Capsella rubella HOM05D006293 ORTHO05D007971 2.5e-78 296.6 361 54.3
BcaB07g31757 Brassica carinata HOM05D006293 ORTHO05D007971 4.3e-78 295.8 346 59.0
AUR62010081 Chenopodium quinoa HOM05D006293 ORTHO05D007971 4.3e-78 295.8 353 48.7
BraA09t36749Z Brassica rapa HOM05D006293 ORTHO05D007971 7.4e-78 295.0 355 54.6
AT2G16630 Arabidopsis thaliana HOM05D006293 ORTHO05D007971 1.6e-77 293.9 378 49.5
Aqoxy5G00988 Aquilegia oxysepala HOM05D006293 ORTHO05D007971 3.7e-77 292.7 336 51.2
AUR62013075 Chenopodium quinoa HOM05D006293 ORTHO05D007971 4.8e-77 292.4 339 49.3
A09p11050 Brassica napus HOM05D006293 ORTHO05D007971 6.2e-77 292.0 346 55.2
Thhalv10022734m.g Eutrema salsugineum HOM05D006293 ORTHO05D007971 9.0e-76 288.1 375 56.0
PSO700G0292 Papaver somniferum HOM05D006293 ORTHO05D007971 3.4e-75 286.2 347 47.3
Ah.01g022670 Amaranthus hybridus HOM05D006293 ORTHO05D007971 1.3e-74 284.3 341 50.1
ECA233G0605 Erigeron canadensis HOM05D001375 ORTHO05D001222 1.7e-74 283.9 355 48.2
Aa31LG8G13900 Aethionema arabicum HOM05D006293 ORTHO05D007971 6.5e-74 282.0 343 50.1
DCAR_003705 Daucus carota HOM05D006293 ORTHO05D007971 8.4e-74 281.6 350 51.4
MBI05_g07501_MAGBIO Magnolia biondii HOM05D006293 ORTHO05D007971 2.1e-72 276.9 338 43.8
MBI05_g30117_MAGBIO Magnolia biondii HOM05D006293 ORTHO05D007971 4.6e-72 275.8 338 42.9
MBI05_g47219_MAGBIO Magnolia biondii HOM05D006293 ORTHO05D007971 6.1e-72 275.4 338 44.1
CsaV3_2G015780 Cucumis sativus L. HOM05D006293 ORTHO05D007971 9.7e-70 268.1 353 53.0
Ah.01g009070 Amaranthus hybridus HOM05D006293 ORTHO05D007971 4.1e-68 262.7 331 51.4
HanXRQChr10g0298941 Helianthus annuus HOM05D006293 ORTHO05D007971 3.4e-67 259.6 349 44.7
MBI05_g48109_MAGBIO Magnolia biondii HOM05D006293 ORTHO05D007971 2.5e-65 253.4 338 41.7
Aqoxy1G01171 Aquilegia oxysepala HOM05D006293 ORTHO05D007971 3.6e-64 249.6 285 55.4
unitig_0.g827 Utricularia gibba HOM05D006293 ORTHO05D007971 2.3e-63 246.9 333 44.4
HPP92_013009 Vanilla planifolia HOM05D006293 ORTHO05D007971 3.0e-63 246.5 330 43.0
MD10G1120000 Malus domestica HOM05D006293 ORTHO05D007971 8.2e-61 238.4 128 85.2
CDE05G1002 Ceratophyllum demersum HOM05D006293 ORTHO05D007971 4.5e-59 232.6 348 39.1
unitig_0.g43 Utricularia gibba HOM05D006293 ORTHO05D007971 7.2e-57 225.3 338 38.5
SEGI_19356 Sequoiadendron giganteum HOM05D006293 ORTHO05D007971 1.0e-55 221.5 355 44.5
BcaB03g16385 Brassica carinata HOM05D006293 ORTHO05D007971 3.0e-55 219.9 346 52.0
MD10G1120100 Malus domestica HOM05D006293 ORTHO05D007971 2.0e-54 217.2 128 80.5
PGR042G0330 Punica granatum HOM05D006293 ORTHO05D007971 4.5e-51 206.1 386 40.4
MSTRG.20014 Avicennia marina HOM05D006293 ORTHO05D007971 4.0e-47 193.0 151 64.2
MBI05_g21530_MAGBIO Magnolia biondii HOM05D006293 ORTHO05D007971 6.3e-45 185.7 260 38.8
SEGI_14996 Sequoiadendron giganteum HOM05D006293 ORTHO05D007971 1.4e-44 184.5 355 40.8
Gohir.1Z049391 Gossypium hirsutum HOM05D006293 ORTHO05D007971 8.5e-42 175.3 184 55.4
Nitab4.5_0000283g0050 Nicotiana tabacum HOM05D001375 ORTHO05D001222 3.4e-38 163.3 117 59.8
ECA234G1535 Erigeron canadensis HOM05D001991 ORTHO05D007971 6.5e-34 149.1 183 42.6
Mapoly0014s0128 Marchantia polymorpha HOM05D006293 ORTHO05D007971 7.5e-30 135.6 349 34.1
Zm00001eb210030 Zea mays HOM05D006293 ORTHO05D007971 3.8e-26 123.2 139 45.3
Pp3c14_8250 Physcomitrium patens HOM05D006293 ORTHO05D007971 1.0e-23 115.2 324 27.8
Aqoxy6G00177 Aquilegia oxysepala HOM05D006293 ORTHO05D007971 1.4e-23 114.8 115 47.8
SEGI_23181 Sequoiadendron giganteum HOM05D006293 ORTHO05D007971 9.8e-22 108.6 163 42.9
MBI05_g31848_MAGBIO Magnolia biondii HOM05D006293 ORTHO05D007971 3.2e-20 103.6 94 48.9
SMO223G0025 Selaginella moellendorffii HOM05D006293 ORTHO05D007971 7.0e-20 102.4 351 25.6
Pp3c1_27500 Physcomitrium patens HOM05D006293 ORTHO05D007971 3.3e-17 93.6 149 35.6
Actinidia00600 Actinidia chinensis HOM05D006293 ORTHO05D007971 5.8e-14 82.8 62 64.5
SGA_v2.0_scaffold9G04828 Striga asiatica HOM05D006293 ORTHO05D007971 2.8e-08 63.9 64 48.4
AagrBONN_evm.TU.Sc2ySwM_368.1639 Anthoceros agrestis HOM05D006293 ORTHO05D009176 2.3e-07 60.8 145 31.7
SMO367G0707 Selaginella moellendorffii HOM05D007363 ORTHO05D009018 8.9e-07 58.9 93 35.5
Mapoly0022s0141 Marchantia polymorpha HOM05D021038 ORTHO05D009018 5.8e-06 56.2 94 35.1
Aqoxy4G01086 Aquilegia oxysepala HOM05D003761 ORTHO05D004412 9.8e-06 55.5 152 28.3


User provided reference genes

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