Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN27G2895 Fragaria x ananassa HOM05D004366 ORTHO05D005058 2.8e-109 398.7 204 100.0
FAN15G0746 Fragaria x ananassa HOM05D004366 ORTHO05D005058 9.8e-107 390.2 204 98.5
FAN24G0452 Fragaria x ananassa HOM05D004366 ORTHO05D005058 5.9e-104 380.9 204 95.6
FvH4_2g13310 Fragaria vesca HOM05D004366 ORTHO05D005058 1.2e-101 373.2 205 94.6
FAN12G0862 Fragaria x ananassa HOM05D004366 ORTHO05D005058 1.6e-101 372.9 204 94.1
FvH4_4g31510 Fragaria vesca HOM05D004366 ORTHO05D005058 3.6e-101 371.7 204 93.6
FAN17G2550 Fragaria x ananassa HOM05D004366 ORTHO05D005058 1.2e-99 366.7 204 92.6
RcHm_v2.0_Chr4g0440001 Rosa chinensis HOM05D004366 ORTHO05D005058 2.3e-95 352.4 204 88.7
Prupe.1G272700 Prunus persica HOM05D004366 ORTHO05D005058 9.5e-86 320.5 201 80.6
MD13G1073400 Malus domestica HOM05D004366 ORTHO05D005058 2.8e-85 318.9 201 79.1
MD16G1074700 Malus domestica HOM05D004366 ORTHO05D005058 4.9e-82 308.1 201 77.6
Manes.01G186800 Manihot esculenta HOM05D004366 ORTHO05D005058 2.4e-81 305.8 201 78.1
QL03p064520 Quercus lobata HOM05D004366 ORTHO05D005058 4.1e-81 305.1 201 77.1
Actinidia31203 Actinidia chinensis HOM05D004366 ORTHO05D005058 5.1e-79 298.1 201 76.6
ClCG05G024360 Citrullus lanatus HOM05D004366 ORTHO05D005058 5.1e-79 298.1 194 78.4
Peaxi162Scf00026g03112 Petunia axillaris HOM05D004366 ORTHO05D005058 1.1e-78 297.0 201 75.6
Atru.chr11.1817 Acer truncatum HOM05D004366 ORTHO05D005058 2.5e-78 295.8 200 75.0
MELO3C012087.2 Cucumis melo HOM05D004366 ORTHO05D005058 2.5e-78 295.8 201 75.1
CsaV3_5G032600 Cucumis sativus L. HOM05D004366 ORTHO05D005058 2.5e-78 295.8 201 75.6
Cpa.g.sc128.8 Carica papaya HOM05D004366 ORTHO05D005058 3.3e-78 295.4 201 75.6
Ca_04775_v3 Cicer arietinum L. HOM05D004366 ORTHO05D005058 3.3e-78 295.4 199 75.4
Eucgr.B03429 Eucalyptus grandis HOM05D004366 ORTHO05D005058 5.6e-78 294.7 200 76.0
TWI12G0004 Tripterygium wilfordii HOM05D004366 ORTHO05D005058 9.6e-78 293.9 201 75.1
Rhsim12G0062000 Rhododendron simsii HOM05D004366 ORTHO05D005058 1.6e-77 293.1 201 74.1
CiPaw.06G083500 Carya illinoinensis HOM05D004366 ORTHO05D005058 2.1e-77 292.7 201 75.1
Glyma.01G045700 Glycine max HOM05D004366 ORTHO05D005058 2.8e-77 292.4 199 74.4
Sed0027317 Sechium edule HOM05D004366 ORTHO05D005058 2.8e-77 292.4 201 72.6
Ciclev10032771m.g Citrus clementina HOM05D004366 ORTHO05D005058 4.7e-77 291.6 200 74.5
Medtr8g463620 Medicago truncatula HOM05D004366 ORTHO05D005058 6.2e-77 291.2 199 74.4
Thecc.02G350500 Theobroma cacao HOM05D004366 ORTHO05D005058 6.2e-77 291.2 199 74.4
CSS0003416 Camellia sinensis var. sinensis HOM05D004366 ORTHO05D005058 8.1e-77 290.8 201 75.1
CSS0021388 Camellia sinensis var. sinensis HOM05D004366 ORTHO05D005058 4.0e-76 288.5 201 74.6
Medtr5g039690 Medicago truncatula HOM05D004366 ORTHO05D005058 8.9e-76 287.3 199 73.4
Thhalv10019150m.g Eutrema salsugineum HOM05D004366 ORTHO05D005058 1.5e-75 286.6 201 73.6
Glyma.02G106000 Glycine max HOM05D004366 ORTHO05D005058 1.5e-75 286.6 199 72.9
CAN.G473.145 Capsicum annuum HOM05D004366 ORTHO05D005058 2.6e-75 285.8 201 73.6
Sc11g0001840 Simmondsia chinensis HOM05D004366 ORTHO05D005058 2.6e-75 285.8 201 72.6
THA.LOC104822115 Tarenaya hassleriana HOM05D004366 ORTHO05D005058 7.6e-75 284.3 201 73.6
FAN22G2022 Fragaria x ananassa HOM05D004366 ORTHO05D005058 9.9e-75 283.9 239 68.6
Lj3C1038T15 Lonicera japonica HOM05D004366 ORTHO05D005058 9.9e-75 283.9 201 71.1
Nn4g23131 Nelumbo nucifera HOM05D004366 ORTHO05D005058 9.9e-75 283.9 192 78.1
Cc11_g13140 Coffea canephora HOM05D004366 ORTHO05D005058 1.7e-74 283.1 201 71.6
Gorai.013G084600 Gossypium raimondii HOM05D004366 ORTHO05D005058 1.7e-74 283.1 199 70.9
Nitab4.5_0000141g0240 Nicotiana tabacum HOM05D004366 ORTHO05D005058 1.7e-74 283.1 201 72.1
Sp5g24810 Schrenkiella parvula HOM05D004366 ORTHO05D005058 1.7e-74 283.1 201 71.1
Phvul.002G086500 Phaseolus vulgaris HOM05D004366 ORTHO05D005058 2.2e-74 282.7 199 72.4
Aa31LG4G11100 Aethionema arabicum HOM05D004366 ORTHO05D005058 2.9e-74 282.3 201 71.1
AL2G28850 Arabidopsis lyrata HOM05D004366 ORTHO05D005058 2.9e-74 282.3 201 71.6
Gohir.D13G074000 Gossypium hirsutum HOM05D004366 ORTHO05D005058 2.9e-74 282.3 199 70.9
Lalb_Chr04g0256161 Lupinus albus HOM05D004366 ORTHO05D005058 2.9e-74 282.3 199 72.9
Lj2g0005379 Lotus japonicus HOM05D004366 ORTHO05D005058 3.8e-74 282.0 190 75.8
AT1G69680 Arabidopsis thaliana HOM05D004366 ORTHO05D005058 4.9e-74 281.6 201 71.1
A07p36060 Brassica napus HOM05D004366 ORTHO05D005058 6.4e-74 281.2 201 69.7
BraA07t31186Z Brassica rapa HOM05D004366 ORTHO05D005058 6.4e-74 281.2 201 69.7
SalBow2G0488 Salvia bowleyana HOM05D004366 ORTHO05D005058 8.4e-74 280.8 201 71.1
Solyc01g010810.4 Solanum lycopersicum HOM05D004366 ORTHO05D005058 8.4e-74 280.8 201 71.6
A07p31430 Brassica napus HOM05D004366 ORTHO05D005058 1.1e-73 280.4 194 73.2
BraA07t30778Z Brassica rapa HOM05D004366 ORTHO05D005058 1.1e-73 280.4 194 73.2
Carub.0002s1634 Capsella rubella HOM05D004366 ORTHO05D005058 1.1e-73 280.4 201 71.6
COL.COLO4_22987 Corchorus olitorius HOM05D004366 ORTHO05D005058 1.1e-73 280.4 199 72.4
Gohir.A13G073900 Gossypium hirsutum HOM05D004366 ORTHO05D005058 1.4e-73 280.0 199 70.4
Sopen01g006640 Solanum pennellii HOM05D004366 ORTHO05D005058 1.9e-73 279.6 201 71.1
CARHR062670 Cardamine hirsuta HOM05D004366 ORTHO05D005058 2.4e-73 279.3 201 70.6
Lsat_1_v5_gn_8_52741 Lactuca sativa HOM05D004366 ORTHO05D005058 4.2e-73 278.5 198 70.2
BcaC08g46415 Brassica carinata HOM05D004366 ORTHO05D005058 5.4e-73 278.1 201 69.2
C06p36720 Brassica napus HOM05D004366 ORTHO05D005058 5.4e-73 278.1 194 72.7
BolC6t39421H Brassica oleracea HOM05D004366 ORTHO05D005058 5.4e-73 278.1 201 69.2
MBI02_g23682_MAGBIO Magnolia biondii HOM05D004366 ORTHO05D005058 5.4e-73 278.1 195 74.4
Psat0s2341g0040 Pisum sativum HOM05D004366 ORTHO05D005058 5.4e-73 278.1 192 74.0
PGSC0003DMG400006558 Solanum tuberosum HOM05D004366 ORTHO05D005058 5.4e-73 278.1 201 71.1
BcaB03g14744 Brassica carinata HOM05D004366 ORTHO05D005058 7.1e-73 277.7 201 69.7
C06p43460 Brassica napus HOM05D004366 ORTHO05D005058 7.1e-73 277.7 201 69.2
BolC6t38782H Brassica oleracea HOM05D004366 ORTHO05D005058 9.3e-73 277.3 194 72.2
Haze_12025 Corylus avellana HOM05D004366 ORTHO05D005058 9.3e-73 277.3 201 74.1
Aqoxy3G03355 Aquilegia oxysepala HOM05D004366 ORTHO05D005058 1.2e-72 276.9 195 72.3
arahy.Tifrunner.gnm1.ann1.5V6A51 Arachis hypogaea HOM05D004366 ORTHO05D005058 1.6e-72 276.6 211 69.2
Sabra13G0046200 Salix brachista HOM05D004366 ORTHO05D005058 1.6e-72 276.6 201 69.7
Hund05888 Selenicereus undatus HOM05D004366 ORTHO05D005058 3.5e-72 275.4 199 70.9
Migut.L01306 Erythranthe guttata HOM05D004366 ORTHO05D005058 1.0e-71 273.9 201 70.1
AUR62026617 Chenopodium quinoa HOM05D004366 ORTHO05D005058 1.7e-71 273.1 201 71.6
TWI53G1314 Tripterygium wilfordii HOM05D004366 ORTHO05D005058 1.7e-71 273.1 199 72.9
EL10Ac6g13190 Beta vulgaris HOM05D004366 ORTHO05D005058 2.3e-71 272.7 201 68.7
AUR62034912 Chenopodium quinoa HOM05D004366 ORTHO05D005058 3.9e-71 271.9 183 76.0
BcaB03g15490 Brassica carinata HOM05D004366 ORTHO05D005058 5.1e-71 271.6 195 71.3
CSS0022805 Camellia sinensis var. sinensis HOM05D004366 ORTHO05D005058 1.1e-70 270.4 200 72.5
SGA_v2.0_scaffold20G09275 Striga asiatica HOM05D004366 ORTHO05D005058 1.1e-70 270.4 201 69.2
Sp3g28750 Schrenkiella parvula HOM05D004366 ORTHO05D005058 1.5e-70 270.0 204 68.1
HanXRQChr12g0362541 Helianthus annuus HOM05D004366 ORTHO05D005058 1.9e-70 269.6 198 67.7
HanXRQChr08g0210471 Helianthus annuus HOM05D004366 ORTHO05D005058 3.3e-70 268.9 198 67.7
ATR0564G205 Amborella trichopoda HOM05D004366 ORTHO05D005058 7.3e-70 267.7 199 70.4
PSO339G1196 Papaver somniferum HOM05D004366 ORTHO05D005058 7.3e-70 267.7 194 71.1
unitig_22.g6909 Utricularia gibba HOM05D004366 ORTHO05D005058 7.3e-70 267.7 201 69.7
AUR62005764 Chenopodium quinoa HOM05D004366 ORTHO05D005058 9.6e-70 267.3 182 75.8
ECA233G4070 Erigeron canadensis HOM05D004366 ORTHO05D005058 1.6e-69 266.5 198 67.7
PSO384G0235 Papaver somniferum HOM05D004366 ORTHO05D005058 2.8e-69 265.8 194 71.1
Oeu028302.2 Olea europaea HOM05D004366 ORTHO05D005058 6.2e-69 264.6 206 69.9
CANSAT25G1390 Cannabis sativa HOM05D004366 ORTHO05D005058 9.0e-68 260.8 201 67.7
PSO675G4203 Papaver somniferum HOM05D004366 ORTHO05D005058 9.0e-68 260.8 194 69.6
Aa31sc15G10 Aethionema arabicum HOM05D004366 ORTHO05D005058 2.0e-67 259.6 178 74.7
Zm00001eb080830 Zea mays HOM05D004366 ORTHO05D005058 2.6e-67 259.2 204 65.7
CANSAT54G1616 Cannabis sativa HOM05D004366 ORTHO05D005058 3.4e-67 258.8 201 66.7
arahy.Tifrunner.gnm1.ann1.QXP3RB Arachis hypogaea HOM05D004366 ORTHO05D005058 1.3e-66 256.9 176 73.3
Nitab4.5_0005950g0010 Nicotiana tabacum HOM05D004366 ORTHO05D005058 1.7e-66 256.5 201 67.7
Os04g0459600 Oryza sativa ssp. japonica HOM05D004366 ORTHO05D005058 1.7e-66 256.5 199 65.8
AUR62028793 Chenopodium quinoa HOM05D004366 ORTHO05D005058 2.4e-65 252.7 201 67.2
AL7G43580 Arabidopsis lyrata HOM05D004366 ORTHO05D005058 7.1e-65 251.1 185 70.3
BcaC08g45875 Brassica carinata HOM05D004366 ORTHO05D005058 2.1e-64 249.6 197 67.0
VMungo1215G0984 Vigna mungo HOM05D004366 ORTHO05D005058 2.1e-64 249.6 180 72.2
PGR102G1003 Punica granatum HOM05D004366 ORTHO05D005058 1.3e-63 246.9 199 64.3
Potri.013G049900 Populus trichocarpa HOM05D004366 ORTHO05D005058 1.7e-63 246.5 182 70.9
Oeu013622.3 Olea europaea HOM05D004366 ORTHO05D005058 4.3e-62 241.9 195 65.6
HPP92_006020 Vanilla planifolia HOM05D004366 ORTHO05D005058 2.8e-61 239.2 186 65.1
GSVIVG01020010001 Vitis vinifera HOM05D004366 ORTHO05D005058 1.8e-60 236.5 168 73.8
Hma1.2p1_0598F.1_g186660 Hydrangea macrophylla HOM05D004366 ORTHO05D005058 6.9e-60 234.6 330 44.8
SEGI_03925 Sequoiadendron giganteum HOM05D004366 ORTHO05D005058 2.6e-59 232.6 194 60.3
Ah.03g135200 Amaranthus hybridus HOM05D004366 ORTHO05D005058 3.4e-59 232.3 199 60.8
Aa31LG9G5650 Aethionema arabicum HOM05D004366 ORTHO05D005058 9.9e-59 230.7 220 57.7
Duzib248G1524 Durio zibethinus HOM05D004366 ORTHO05D005058 9.9e-59 230.7 200 61.5
SGA_v2.0_scaffold53G19387 Striga asiatica HOM05D004366 ORTHO05D005058 3.5e-56 222.2 237 56.1
TPR.G39101 Trifolium pratense HOM05D004366 ORTHO05D005058 4.6e-56 221.9 167 68.9
vmacro01244 Vaccinium macrocarpon HOM05D004366 ORTHO05D005058 4.6e-56 221.9 250 51.2
Cfa008996 Carpinus fangiana HOM05D004366 ORTHO05D005058 6.7e-55 218.0 219 57.5
Pp3c9_14930 Physcomitrium patens HOM05D004366 ORTHO05D005058 1.6e-48 196.8 193 54.4
vmacro01242 Vaccinium macrocarpon HOM05D004366 ORTHO05D005058 3.5e-48 195.7 225 50.7
AagrBONN_evm.TU.Sc2ySwM_344.5131 Anthoceros agrestis HOM05D004366 ORTHO05D005058 1.1e-46 190.7 192 51.0
DCAR_027406 Daucus carota HOM05D002775 ORTHO05D005058 8.2e-45 184.5 129 74.4
arahy.Tifrunner.gnm1.ann1.4LW61L Arachis hypogaea HOM05D004366 ORTHO05D005058 9.3e-41 171.0 118 72.9
SMO147G0050 Selaginella moellendorffii HOM05D004366 ORTHO05D005058 1.6e-40 170.2 201 49.3
CBR_g17957 Chara braunii HOM05D004366 ORTHO05D005058 2.1e-40 169.9 195 48.2
Dinv16634 Davidia involucrata HOM05D004366 ORTHO05D005058 4.6e-40 168.7 112 74.1
TAR629G2773 Trochodendron aralioides HOM05D004366 ORTHO05D005058 1.5e-38 163.7 112 71.4
Pp3c15_14240 Physcomitrium patens HOM05D004366 ORTHO05D005058 3.4e-35 152.5 147 55.1
SalBow2G3183 Salvia bowleyana HOM05D004366 ORTHO05D005058 3.4e-35 152.5 117 70.1
AagrBONN_evm.TU.Sc2ySwM_362.1786 Anthoceros agrestis HOM05D004366 ORTHO05D005058 7.7e-35 151.4 174 47.1
MD11G1061500 Malus domestica HOM05D004366 ORTHO05D005058 1.4e-33 147.1 112 65.2
FAN07G2952 Fragaria x ananassa HOM05D004366 ORTHO05D005058 7.4e-30 134.8 75 86.7
arahy.Tifrunner.gnm1.ann1.MY0RSE Arachis hypogaea HOM05D004366 ORTHO05D005058 2.2e-29 133.3 103 66.0
Mapoly0113s0045 Marchantia polymorpha HOM05D004366 ORTHO05D005058 2.8e-29 132.9 205 39.0
Potri.019G023800 Populus trichocarpa HOM05D004366 ORTHO05D005058 3.1e-28 129.4 94 63.8
MSTRG.695 Avicennia marina HOM05D004366 ORTHO05D005058 3.8e-26 122.5 85 68.2
CSS0042124 Camellia sinensis var. sinensis HOM05D004366 ORTHO05D005058 5.0e-26 122.1 81 72.8
CSS0000370 Camellia sinensis var. sinensis HOM05D004366 ORTHO05D005058 3.2e-25 119.4 81 70.4
MCO13G325 Micromonas commoda HOM05D004366 ORTHO05D005058 3.2e-25 119.4 201 37.8
arahy.Tifrunner.gnm1.ann1.D4KK35 Arachis hypogaea HOM05D004366 ORTHO05D005058 5.5e-25 118.6 128 53.9
arahy.Tifrunner.gnm1.ann1.J913Y5 Arachis hypogaea HOM05D004366 ORTHO05D005058 5.5e-25 118.6 84 67.9
Lj6A789T49 Lonicera japonica HOM05D004366 ORTHO05D005058 2.3e-23 113.2 88 65.9
Rhsim11G0057700 Rhododendron simsii HOM05D004366 ORTHO05D005058 1.3e-21 107.5 81 69.1
PGSC0003DMG400015729 Solanum tuberosum HOM05D004366 ORTHO05D005058 6.3e-21 105.1 101 58.4
CAN.G154.11 Capsicum annuum HOM05D004366 ORTHO05D005058 8.2e-21 104.8 131 49.6
arahy.Tifrunner.gnm1.ann1.8CQ436 Arachis hypogaea HOM05D004366 ORTHO05D005058 9.1e-20 101.3 68 75.0
arahy.Tifrunner.gnm1.ann1.N9R1JE Arachis hypogaea HOM05D004366 ORTHO05D005058 1.2e-19 100.9 77 67.5
BcaC07g37109 Brassica carinata HOM05D004366 ORTHO05D005058 1.2e-19 100.9 100 57.0
C08p04780 Brassica napus HOM05D004366 ORTHO05D005058 5.9e-19 98.6 71 70.4
BolC8t47277H Brassica oleracea HOM05D004366 ORTHO05D005058 1.1e-17 94.4 76 67.1
PRCOL_00002884 Prasinoderma coloniale HOM05D004366 ORTHO05D005058 2.5e-17 93.2 203 34.0
Cre05.g244850 Chlamydomonas reinhardtii HOM05D004366 ORTHO05D005058 2.7e-16 89.7 192 34.4
arahy.Tifrunner.gnm1.ann1.NKT7G2 Arachis hypogaea HOM05D004366 ORTHO05D005058 4.7e-16 89.0 115 48.7
CANSAT54G0841 Cannabis sativa HOM05D001400 ORTHO05D001795 1.7e-13 80.5 75 56.0
Lsat_1_v5_gn_1_103541 Lactuca sativa HOM05D004366 ORTHO05D005058 4.8e-13 79.0 102 45.1
SalBow1G5797 Salvia bowleyana HOM05D004366 ORTHO05D005058 1.0e-10 71.2 45 71.1
A08p04480 Brassica napus HOM05D004366 ORTHO05D005058 7.2e-09 65.1 71 47.9
AUR62028525 Chenopodium quinoa HOM05D004366 ORTHO05D000022 2.1e-08 63.5 47 63.8
BraA08t32473Z Brassica rapa HOM05D004366 ORTHO05D005058 1.0e-07 61.2 40 70.0
Atru.chr9.1643 Acer truncatum HOM05D004366 ORTHO05D005058 2.3e-07 60.1 42 71.4
RcHm_v2.0_Chr1g0352451 Rosa chinensis HOM05D004366 ORTHO05D005058 8.8e-07 58.2 36 80.6


User provided reference genes

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