Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN27G2747 Fragaria x ananassa HOM05D003937 ORTHO05D004583 2.7e-113 413.7 665 100.0
FAN24G0691 Fragaria x ananassa HOM05D003937 ORTHO05D004583 1.4e-106 391.3 666 98.2
FvH4_2g16620 Fragaria vesca HOM05D003937 ORTHO05D004583 2.7e-105 387.1 666 97.7
FAN15G3453 Fragaria x ananassa HOM05D003937 ORTHO05D004583 3.9e-104 383.3 665 98.0
FAN20G0177 Fragaria x ananassa HOM05D003937 ORTHO05D004583 6.7e-104 382.5 665 92.5
RcHm_v2.0_Chr6g0280681 Rosa chinensis HOM05D003937 ORTHO05D004583 1.4e-85 321.6 667 87.9
MD10G1139500 Malus domestica HOM05D003937 ORTHO05D004583 2.8e-41 174.5 145 69.7
MD05G1134400 Malus domestica HOM05D003937 ORTHO05D004583 4.9e-38 163.7 137 69.3
Manes.04G067300 Manihot esculenta HOM05D003937 ORTHO05D004583 8.3e-38 162.9 139 64.0
Ciclev10028873m.g Citrus clementina HOM05D003937 ORTHO05D004583 9.2e-37 159.5 131 66.4
Duzib052G0838 Durio zibethinus HOM05D003937 ORTHO05D004583 2.0e-36 158.3 143 61.5
Glyma.06G000500 Glycine max HOM05D003937 ORTHO05D004583 2.0e-36 158.3 142 62.7
ClCG02G009960 Citrullus lanatus HOM05D003937 ORTHO05D004583 4.6e-36 157.1 146 63.0
Potri.009G166100 Populus trichocarpa HOM05D003937 ORTHO05D004583 5.9e-36 156.8 149 59.1
QL11p055606 Quercus lobata HOM05D003937 ORTHO05D004583 5.9e-36 156.8 142 61.3
CsaV3_6G010160 Cucumis sativus L. HOM05D003937 ORTHO05D004583 1.7e-35 155.2 146 62.3
Glyma.04G000700 Glycine max HOM05D003937 ORTHO05D004583 2.3e-35 154.8 142 61.3
Gohir.A01G174900 Gossypium hirsutum HOM05D003937 ORTHO05D004583 2.9e-35 154.5 143 58.7
Prupe.8G178200 Prunus persica HOM05D003937 ORTHO05D004583 3.9e-35 154.1 119 72.3
QL11p055907 Quercus lobata HOM05D003937 ORTHO05D004583 5.0e-35 153.7 142 60.6
COL.COLO4_17933 Corchorus olitorius HOM05D003937 ORTHO05D004583 6.6e-35 153.3 143 61.5
Duzib132G1231 Durio zibethinus HOM05D003937 ORTHO05D004583 1.5e-34 152.1 135 61.5
Gohir.D01G166000 Gossypium hirsutum HOM05D003937 ORTHO05D004583 2.5e-34 151.4 141 58.2
Gorai.002G206500 Gossypium raimondii HOM05D003937 ORTHO05D004583 2.5e-34 151.4 141 58.2
Thecc.02G044800 Theobroma cacao HOM05D003937 ORTHO05D004583 2.5e-34 151.4 143 59.4
arahy.Tifrunner.gnm1.ann1.388DF8 Arachis hypogaea HOM05D003937 ORTHO05D004583 5.6e-34 150.2 133 63.9
Lalb_Chr08g0246851 Lupinus albus HOM05D003937 ORTHO05D004583 2.1e-33 148.3 140 58.6
VMungo0540G0354 Vigna mungo HOM05D003937 ORTHO05D004583 2.8e-33 147.9 134 61.9
arahy.Tifrunner.gnm1.ann1.G18Z51 Arachis hypogaea HOM05D003937 ORTHO05D004583 8.0e-33 146.4 133 62.4
Phvul.006G042500 Phaseolus vulgaris HOM05D003937 ORTHO05D004583 3.1e-32 144.4 134 61.9
TPR.G38537 Trifolium pratense HOM05D003937 ORTHO05D004583 5.2e-32 143.7 134 61.2
Gohir.D02G231300 Gossypium hirsutum HOM05D003937 ORTHO05D004583 8.9e-32 142.9 144 59.0
TWI75G1612 Tripterygium wilfordii HOM05D003937 ORTHO05D004583 2.0e-31 141.7 128 62.5
Ca_16692_v3 Cicer arietinum L. HOM05D003937 ORTHO05D004583 2.6e-31 141.4 134 60.4
Potri.004G205200 Populus trichocarpa HOM05D003937 ORTHO05D004583 3.4e-31 141.0 143 56.6
Gohir.A03G209600 Gossypium hirsutum HOM05D003937 ORTHO05D004583 7.5e-31 139.8 144 58.3
Medtr3g118500 Medicago truncatula HOM05D003937 ORTHO05D004583 9.8e-31 139.4 144 54.9
CiPaw.05G091700 Carya illinoinensis HOM05D003937 ORTHO05D004583 1.3e-30 139.0 143 57.3
Atru.chr5.3549 Acer truncatum HOM05D003937 ORTHO05D004583 1.9e-29 135.2 143 57.3
Dinv41880 Davidia involucrata HOM05D001927 ORTHO05D001972 4.1e-29 134.0 146 58.2
Cpa.g.sc20.204 Carica papaya HOM05D003937 ORTHO05D004583 9.2e-29 132.9 133 59.4
Hma1.2p1_0271F.1_g108900 Hydrangea macrophylla HOM05D003937 ORTHO05D004583 9.2e-29 132.9 135 60.0
Gorai.005G258900 Gossypium raimondii HOM05D003937 ORTHO05D004583 1.2e-28 132.5 144 55.6
Lj1g0000413 Lotus japonicus HOM05D003937 ORTHO05D004583 1.6e-28 132.1 142 56.3
Sabra04G0138500 Salix brachista HOM05D003937 ORTHO05D004583 6.0e-28 130.2 142 52.8
Sed0010938 Sechium edule HOM05D003937 ORTHO05D004583 7.8e-28 129.8 138 57.2
CSS0036568 Camellia sinensis var. sinensis HOM05D003937 ORTHO05D004583 1.3e-27 129.0 142 57.0
CANSAT25G1327 Cannabis sativa HOM05D003937 ORTHO05D004583 1.3e-27 129.0 140 59.3
Haze_02016 Corylus avellana HOM05D003937 ORTHO05D004583 1.7e-27 128.6 112 66.1
Cfa005351 Carpinus fangiana HOM05D003937 ORTHO05D004583 4.3e-26 124.0 114 63.2
GSVIVG01023888001 Vitis vinifera HOM05D003937 ORTHO05D004583 8.1e-25 119.8 104 63.5
EL10Ac9g21245 Beta vulgaris HOM05D003937 ORTHO05D004583 1.4e-24 119.0 139 49.6
Psat5g000520 Pisum sativum HOM05D003937 ORTHO05D004583 2.3e-24 118.2 102 63.7
Lalb_Chr11g0061231 Lupinus albus HOM05D003937 ORTHO05D004583 4.4e-23 114.0 127 52.8
arahy.Tifrunner.gnm1.ann1.BKYH70 Arachis hypogaea HOM05D003937 ORTHO05D004583 5.8e-23 113.6 116 56.0
AUR62011702 Chenopodium quinoa HOM05D003937 ORTHO05D004583 7.5e-23 113.2 130 50.8
arahy.Tifrunner.gnm1.ann1.5851ZQ Arachis hypogaea HOM05D003937 ORTHO05D004583 1.3e-22 112.5 116 54.3
arahy.Tifrunner.gnm1.ann1.13SVP6 Arachis hypogaea HOM05D003937 ORTHO05D004583 1.7e-22 112.1 117 57.3
Dinv14164 Davidia involucrata HOM05D001927 ORTHO05D001972 1.7e-22 112.1 142 53.5
AUR62012919 Chenopodium quinoa HOM05D003937 ORTHO05D004583 2.9e-22 111.3 130 49.2
PGR142G1962 Punica granatum HOM05D003937 ORTHO05D004583 3.7e-22 110.9 129 53.5
TAR625G1504 Trochodendron aralioides HOM05D003937 ORTHO05D004583 1.4e-21 109.0 145 51.0
Rhsim05G0047600 Rhododendron simsii HOM05D003937 ORTHO05D004583 2.4e-21 108.2 130 53.8
TWI79G1491 Tripterygium wilfordii HOM05D003937 ORTHO05D004583 7.1e-21 106.7 110 57.3
Eucgr.I01517 Eucalyptus grandis HOM05D003937 ORTHO05D004583 3.5e-20 104.4 128 53.9
Sc18g0006030 Simmondsia chinensis HOM05D003937 ORTHO05D004583 8.6e-19 99.8 86 64.0
Actinidia32012 Actinidia chinensis HOM05D003937 ORTHO05D004583 1.1e-18 99.4 151 50.3
Migut.B00012 Erythranthe guttata HOM05D003937 ORTHO05D004583 1.1e-18 99.4 100 57.0
Sp7g37440 Schrenkiella parvula HOM05D003937 ORTHO05D004583 2.5e-18 98.2 87 59.8
CAN.G1725.8 Capsicum annuum HOM05D003937 ORTHO05D004583 3.3e-18 97.8 110 55.5
Oeu003435.2 Olea europaea HOM05D003937 ORTHO05D004583 4.3e-18 97.4 78 66.7
PGSC0003DMG400014661 Solanum tuberosum HOM05D003937 ORTHO05D004583 4.3e-18 97.4 110 53.6
TAR381G0291 Trochodendron aralioides HOM05D003937 ORTHO05D004583 5.6e-18 97.1 139 48.9
Peaxi162Scf00362g00245 Petunia axillaris HOM05D003937 ORTHO05D004583 7.3e-18 96.7 111 57.7
AT4G38280 Arabidopsis thaliana HOM05D003937 ORTHO05D004583 1.6e-17 95.5 140 42.9
Thhalv10026442m.g Eutrema salsugineum HOM05D003937 ORTHO05D004583 1.6e-17 95.5 130 47.7
vmacro17300 Vaccinium macrocarpon HOM05D003937 ORTHO05D004583 4.7e-17 94.0 103 52.4
Aa31LG6G16740 Aethionema arabicum HOM05D003937 ORTHO05D004583 6.2e-17 93.6 100 53.0
AL7G10200 Arabidopsis lyrata HOM05D003937 ORTHO05D004583 6.2e-17 93.6 79 63.3
Solyc01g112180.4 Solanum lycopersicum HOM05D003937 ORTHO05D004583 6.2e-17 93.6 69 71.0
MBI08_g12714_MAGBIO Magnolia biondii HOM05D003937 ORTHO05D004583 1.1e-16 92.8 120 50.8
Carub.0007s0022 Capsella rubella HOM05D003937 ORTHO05D004583 2.3e-16 91.7 109 50.5
Sopen01g054230 Solanum pennellii HOM05D003937 ORTHO05D004583 2.3e-16 91.7 110 50.9
SalBow1G5464 Salvia bowleyana HOM05D003937 ORTHO05D004583 5.2e-16 90.5 146 43.8
Aqoxy5G01031 Aquilegia oxysepala HOM05D003937 ORTHO05D004583 1.2e-15 89.4 151 43.7
AT2G45250 Arabidopsis thaliana HOM05D003937 ORTHO05D004583 1.2e-15 89.4 144 42.4
MSTRG.16955 Avicennia marina HOM05D003937 ORTHO05D004583 1.2e-15 89.4 83 60.2
BcaB03g12256 Brassica carinata HOM05D003937 ORTHO05D004583 1.2e-15 89.4 71 69.0
DCAR_015663 Daucus carota HOM05D003937 ORTHO05D004583 1.2e-15 89.4 98 56.1
Nn5g30963 Nelumbo nucifera HOM05D003937 ORTHO05D004583 1.2e-15 89.4 128 46.1
Cc09_g10730 Coffea canephora HOM05D003937 ORTHO05D004583 1.5e-15 89.0 111 53.2
Nitab4.5_0011212g0050 Nicotiana tabacum HOM05D003937 ORTHO05D004583 2.0e-15 88.6 101 52.5
GSVIVG01026659001 Vitis vinifera HOM05D003937 ORTHO05D004583 4.4e-15 87.4 128 45.3
Hund06165 Selenicereus undatus HOM05D003937 ORTHO05D004583 1.3e-14 85.9 146 43.8
BolC3t20032H Brassica oleracea HOM05D003937 ORTHO05D004583 1.7e-14 85.5 75 65.3
Nn6g31719 Nelumbo nucifera HOM05D003937 ORTHO05D004583 1.7e-14 85.5 99 52.5
Prupe.5G011500 Prunus persica HOM05D003937 ORTHO05D004583 2.2e-14 85.1 139 47.5
PSO675G5999 Papaver somniferum HOM05D003937 ORTHO05D004583 2.9e-14 84.7 128 45.3
arahy.Tifrunner.gnm1.ann1.2P21EX Arachis hypogaea HOM05D003937 ORTHO05D004583 3.7e-14 84.3 109 48.6
BraA08t34322Z Brassica rapa HOM05D003937 ORTHO05D004583 3.7e-14 84.3 130 46.2
C03p77740 Brassica napus HOM05D003937 ORTHO05D004583 4.9e-14 84.0 75 64.0
HanXRQChr12g0374421 Helianthus annuus HOM05D003937 ORTHO05D004583 4.9e-14 84.0 115 47.0
GSVIVG01009897001 Vitis vinifera HOM05D003937 ORTHO05D004583 4.9e-14 84.0 110 48.2
PSO541G3051 Papaver somniferum HOM05D003937 ORTHO05D004583 6.4e-14 83.6 133 44.4
Aqoxy6G01687 Aquilegia oxysepala HOM05D003937 ORTHO05D004583 8.4e-14 83.2 132 40.9
SGA_v2.0_scaffold32G13344 Striga asiatica HOM05D003937 ORTHO05D004583 8.4e-14 83.2 126 45.2
MD06G1009100 Malus domestica HOM05D003937 ORTHO05D004583 1.9e-13 82.0 116 50.9
Lj4A806T76 Lonicera japonica HOM05D003937 ORTHO05D004583 3.2e-13 81.3 128 41.4
Nitab4.5_0000783g0190 Nicotiana tabacum HOM05D003937 ORTHO05D004583 3.2e-13 81.3 95 51.6
A08p23700 Brassica napus HOM05D003937 ORTHO05D004583 7.1e-13 80.1 75 61.3
ATR0661G493 Amborella trichopoda HOM05D003937 ORTHO05D004583 9.2e-13 79.7 90 51.1
CANSAT25G1278 Cannabis sativa HOM05D003937 ORTHO05D004583 3.5e-12 77.8 96 49.0
ECA246G4591 Erigeron canadensis HOM05D003937 ORTHO05D004583 4.6e-12 77.4 68 63.2
Os04g0136900 Oryza sativa ssp. japonica HOM05D003937 ORTHO05D004583 4.6e-12 77.4 92 44.6
RcHm_v2.0_Chr7g0215391 Rosa chinensis HOM05D003937 ORTHO05D004583 6.0e-12 77.0 145 42.1
Cc10_g00590 Coffea canephora HOM05D003937 ORTHO05D004583 1.3e-11 75.9 92 47.8
Zm00001eb420050 Zea mays HOM05D003937 ORTHO05D004583 3.0e-11 74.7 122 41.8
Lsat_1_v5_gn_3_48780 Lactuca sativa HOM05D003937 ORTHO05D004583 3.9e-11 74.3 94 47.9
CDE05G2511 Ceratophyllum demersum HOM05D003937 ORTHO05D004583 5.1e-11 73.9 90 46.7
Lsat_1_v5_gn_8_26360 Lactuca sativa HOM05D003937 ORTHO05D004583 6.6e-11 73.6 81 46.9
CDE06G0218 Ceratophyllum demersum HOM05D003937 ORTHO05D004583 1.1e-10 72.8 84 51.2
FvH4_5g25250 Fragaria vesca HOM05D003937 ORTHO05D004583 1.1e-10 72.8 128 43.0
CARHR294070 Cardamine hirsuta HOM05D003937 ORTHO05D004583 1.5e-10 72.4 63 58.7
Os09g0549400 Oryza sativa ssp. japonica HOM05D003937 ORTHO05D004583 1.5e-10 72.4 71 54.9
CAN.G311.122 Capsicum annuum HOM05D003937 ORTHO05D004583 1.9e-10 72.0 66 57.6
ECA233G2935 Erigeron canadensis HOM05D003937 ORTHO05D004583 1.9e-10 72.0 77 55.8
MSTRG.24495 Avicennia marina HOM05D003937 ORTHO05D004583 2.5e-10 71.6 135 36.3
HanXRQChr13g0409731 Helianthus annuus HOM05D003937 ORTHO05D004583 4.3e-10 70.9 96 42.7
Oeu046353.1 Olea europaea HOM05D003937 ORTHO05D004583 5.6e-10 70.5 125 41.6
QL02p014402 Quercus lobata HOM05D003937 ORTHO05D004583 9.6e-10 69.7 115 45.2
Solyc04g082450.3 Solanum lycopersicum HOM05D003937 ORTHO05D004583 1.2e-09 69.3 66 56.1
Sopen04g036060 Solanum pennellii HOM05D003937 ORTHO05D004583 1.2e-09 69.3 66 56.1
MSTRG.22102 Avicennia marina HOM05D003937 ORTHO05D004583 1.6e-09 68.9 93 48.4
Cfa014094 Carpinus fangiana HOM05D003937 ORTHO05D004583 2.1e-09 68.6 130 40.8
Actinidia37917 Actinidia chinensis HOM05D003937 ORTHO05D004583 2.8e-09 68.2 96 41.7
Dinv31951 Davidia involucrata HOM05D003937 ORTHO05D004583 2.8e-09 68.2 104 43.3
vmacro08750 Vaccinium macrocarpon HOM05D003937 ORTHO05D004583 2.8e-09 68.2 65 55.4
HPP92_021046 Vanilla planifolia HOM05D003937 ORTHO05D004583 2.8e-09 68.2 126 38.9
Zm00001eb104250 Zea mays HOM05D003937 ORTHO05D004583 4.7e-09 67.4 100 46.0
HanXRQChr12g0367561 Helianthus annuus HOM05D003937 ORTHO05D004583 6.2e-09 67.0 114 39.5
DCAR_013923 Daucus carota HOM05D003937 ORTHO05D004583 1.1e-08 66.2 95 42.1
Nitab4.5_0000588g0020 Nicotiana tabacum HOM05D003937 ORTHO05D004583 1.1e-08 66.2 131 38.9
Migut.N02961 Erythranthe guttata HOM05D003937 ORTHO05D004583 1.4e-08 65.9 135 35.6
SalBow6G3106 Salvia bowleyana HOM05D003937 ORTHO05D004583 3.1e-08 64.7 67 50.7
Aqoxy6G01688 Aquilegia oxysepala HOM05D003937 ORTHO05D004583 4.0e-08 64.3 129 34.1
HPP92_025977 Vanilla planifolia HOM05D003937 ORTHO05D004583 6.8e-08 63.5 69 50.7
CiPaw.07G137900 Carya illinoinensis HOM05D003937 ORTHO05D004583 1.2e-07 62.8 92 43.5
ECA233G5124 Erigeron canadensis HOM05D003937 ORTHO05D004583 1.2e-07 62.8 66 48.5
Rhsim07G0256300 Rhododendron simsii HOM05D003937 ORTHO05D004583 1.2e-07 62.8 129 36.4
CDE06G2177 Ceratophyllum demersum HOM05D003937 ORTHO05D004583 2.6e-07 61.6 84 48.8
SGA_v2.0_scaffold58G20314 Striga asiatica HOM05D003937 ORTHO05D004583 4.4e-07 60.8 128 39.1
Sed0014450 Sechium edule HOM05D003937 ORTHO05D004583 5.8e-07 60.5 119 37.8
CDE05G1352 Ceratophyllum demersum HOM05D003937 ORTHO05D004583 1.3e-06 59.3 88 43.2
FAN08G1258 Fragaria x ananassa HOM05D003937 ORTHO05D004583 1.3e-06 59.3 102 43.1
AagrBONN_evm.TU.Sc2ySwM_117.297 Anthoceros agrestis HOM05D003937 ORTHO05D004583 1.7e-06 58.9 138 31.2
SEGI_28645 Sequoiadendron giganteum HOM05D003937 ORTHO05D004583 1.7e-06 58.9 143 35.7
CsaV3_6G031550 Cucumis sativus L. HOM05D003937 ORTHO05D004583 2.2e-06 58.5 77 42.9
Haze_22797 Corylus avellana HOM05D003937 ORTHO05D004583 2.9e-06 58.2 120 42.5
FAN04G2017 Fragaria x ananassa HOM05D003937 ORTHO05D004583 6.4e-06 57.0 104 44.2
SMO347G0358 Selaginella moellendorffii HOM05D003937 ORTHO05D004583 6.4e-06 57.0 113 36.3
Haze_22798 Corylus avellana HOM05D003937 ORTHO05D004583 8.4e-06 56.6 122 41.0


User provided reference genes

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