Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN27G2694 Fragaria x ananassa HOM05D004016 ORTHO05D004732 2.1e-112 409.1 206 100.0
FAN15G1959 Fragaria x ananassa HOM05D004016 ORTHO05D004732 2.5e-110 402.1 206 98.5
FAN24G3262 Fragaria x ananassa HOM05D004016 ORTHO05D004732 3.9e-103 378.3 214 91.6
FAN20G3152 Fragaria x ananassa HOM05D004016 ORTHO05D004732 6.6e-103 377.5 214 91.1
FvH4_2g23281 Fragaria vesca HOM05D004016 ORTHO05D004732 9.6e-102 373.6 209 91.9
RcHm_v2.0_Chr6g0290651 Rosa chinensis HOM05D004016 ORTHO05D004732 3.0e-95 352.1 223 84.3
Prupe.8G238400 Prunus persica HOM05D004016 ORTHO05D004732 1.5e-67 260.0 215 69.3
MD03G1262100 Malus domestica HOM05D004016 ORTHO05D004732 7.2e-65 251.1 216 65.3
MD11G1282800 Malus domestica HOM05D004016 ORTHO05D004732 2.1e-64 249.6 215 67.0
Haze_04687 Corylus avellana HOM05D004016 ORTHO05D004732 4.4e-54 215.3 208 58.7
Cfa006163 Carpinus fangiana HOM05D004016 ORTHO05D004732 7.4e-54 214.5 214 57.0
Hma1.2p1_0667F.1_g199710 Hydrangea macrophylla HOM05D004016 ORTHO05D004732 1.7e-53 213.4 218 59.6
Lalb_Chr21g0306401 Lupinus albus HOM05D004016 ORTHO05D004732 6.3e-53 211.5 209 62.2
COL.COLO4_09066 Corchorus olitorius HOM05D004016 ORTHO05D004732 1.1e-52 210.7 209 58.9
Dinv32914 Davidia involucrata HOM05D004016 ORTHO05D004732 2.4e-52 209.5 217 57.6
Ca_09744_v3 Cicer arietinum L. HOM05D004016 ORTHO05D004732 3.1e-52 209.1 212 58.0
Potri.005G211400 Populus trichocarpa HOM05D004016 ORTHO05D004732 4.1e-52 208.8 222 57.2
Atru.chr5.1471 Acer truncatum HOM05D004016 ORTHO05D004732 5.3e-52 208.4 223 55.6
Manes.05G079900 Manihot esculenta HOM05D004016 ORTHO05D004732 3.5e-51 205.7 220 55.9
Lalb_Chr02g0142631 Lupinus albus HOM05D004016 ORTHO05D004732 4.5e-51 205.3 209 58.9
Lalb_Chr06g0162891 Lupinus albus HOM05D004016 ORTHO05D004732 1.3e-50 203.8 211 57.3
Sc05g0001440 Simmondsia chinensis HOM05D004016 ORTHO05D004732 1.7e-50 203.4 206 51.5
Ciclev10022155m.g Citrus clementina HOM05D004016 ORTHO05D004732 8.5e-50 201.1 223 54.3
Lj2E1169T0 Lonicera japonica HOM05D004016 ORTHO05D004732 1.5e-49 200.3 225 55.1
Gohir.A08G065500 Gossypium hirsutum HOM05D004016 ORTHO05D004732 1.2e-48 197.2 216 55.1
TAR636G0684 Trochodendron aralioides HOM05D004016 ORTHO05D004732 1.6e-48 196.8 208 53.8
Hma1.2p1_0822F.1_g224340 Hydrangea macrophylla HOM05D004016 ORTHO05D004732 2.7e-48 196.1 214 54.7
Cpa.g.sc487.4 Carica papaya HOM05D004016 ORTHO05D004732 3.6e-48 195.7 218 54.1
Duzib133G1129 Durio zibethinus HOM05D004016 ORTHO05D004732 4.7e-48 195.3 207 54.6
Gohir.D08G074000 Gossypium hirsutum HOM05D004016 ORTHO05D004732 4.7e-48 195.3 216 55.1
Gorai.004G078400 Gossypium raimondii HOM05D004016 ORTHO05D004732 4.7e-48 195.3 216 55.1
Manes.01G206100 Manihot esculenta HOM05D004016 ORTHO05D004732 1.4e-47 193.7 220 55.0
TAR633G2817 Trochodendron aralioides HOM05D004016 ORTHO05D004732 1.4e-47 193.7 212 54.2
Cc01_g19290 Coffea canephora HOM05D004016 ORTHO05D004732 8.8e-47 191.0 224 53.6
ClCG07G000350 Citrullus lanatus HOM05D004016 ORTHO05D004732 1.2e-46 190.7 215 56.3
Potri.002G050900 Populus trichocarpa HOM05D004016 ORTHO05D004732 2.0e-46 189.9 226 53.5
arahy.Tifrunner.gnm1.ann1.256EAD Arachis hypogaea HOM05D004016 ORTHO05D004732 2.6e-46 189.5 211 54.5
Actinidia21126 Actinidia chinensis HOM05D004016 ORTHO05D004732 3.3e-46 189.1 214 53.3
Ah.02g110900 Amaranthus hybridus HOM05D004016 ORTHO05D004732 4.4e-46 188.7 210 54.8
Duzib138G0182 Durio zibethinus HOM05D004016 ORTHO05D004732 4.4e-46 188.7 224 52.7
Ca_08613_v3 Cicer arietinum L. HOM05D004016 ORTHO05D004732 7.5e-46 188.0 210 54.3
CsaV3_6G037200 Cucumis sativus L. HOM05D004016 ORTHO05D004732 9.7e-46 187.6 213 54.0
Rhsim01G0273500 Rhododendron simsii HOM05D004016 ORTHO05D004732 9.7e-46 187.6 211 56.9
Sed0007164 Sechium edule HOM05D004016 ORTHO05D004732 1.3e-45 187.2 218 54.1
EL10Ac5g10544 Beta vulgaris HOM05D004016 ORTHO05D004732 1.7e-45 186.8 216 54.6
MSTRG.18246 Avicennia marina HOM05D004016 ORTHO05D004732 3.7e-45 185.7 217 52.5
MELO3C014394.2 Cucumis melo HOM05D004016 ORTHO05D004732 3.7e-45 185.7 218 53.7
vmacro14911 Vaccinium macrocarpon HOM05D004016 ORTHO05D004732 3.7e-45 185.7 209 55.5
Lj1C48T4 Lonicera japonica HOM05D004016 ORTHO05D004732 4.8e-45 185.3 204 52.0
Lj1g0004863 Lotus japonicus HOM05D004016 ORTHO05D004732 4.8e-45 185.3 212 53.8
LjContig00056g0010505 Lotus japonicus HOM05D004016 ORTHO05D004732 4.8e-45 185.3 212 53.8
THA.LOC104825992 Tarenaya hassleriana HOM05D004016 ORTHO05D004732 4.8e-45 185.3 221 51.6
MSTRG.21548 Avicennia marina HOM05D004016 ORTHO05D004732 6.3e-45 184.9 215 53.0
Thecc.01G275600 Theobroma cacao HOM05D004016 ORTHO05D004732 1.4e-44 183.7 210 53.3
TWI12G1445 Tripterygium wilfordii HOM05D004016 ORTHO05D004732 4.1e-44 182.2 225 51.1
TWI18G0383 Tripterygium wilfordii HOM05D004016 ORTHO05D004732 5.3e-44 181.8 215 52.6
Lsat_1_v5_gn_8_56660 Lactuca sativa HOM05D004016 ORTHO05D004732 7.0e-44 181.4 224 52.2
Sabra05G0161500 Salix brachista HOM05D004016 ORTHO05D004732 2.0e-43 179.9 221 51.6
Glyma.02G146200 Glycine max HOM05D004016 ORTHO05D004732 1.0e-42 177.6 217 55.8
Eucgr.H01463 Eucalyptus grandis HOM05D004016 ORTHO05D004732 1.7e-42 176.8 217 53.9
Phvul.007G173300 Phaseolus vulgaris HOM05D004016 ORTHO05D004732 2.2e-42 176.4 211 55.0
Gohir.A08G186500 Gossypium hirsutum HOM05D004016 ORTHO05D004732 2.9e-42 176.0 214 50.0
THA.LOC104801244 Tarenaya hassleriana HOM05D004016 ORTHO05D004732 2.9e-42 176.0 214 50.5
Solyc09g065380.2 Solanum lycopersicum HOM05D004016 ORTHO05D004732 5.0e-42 175.3 214 51.4
Sopen09g027150 Solanum pennellii HOM05D004016 ORTHO05D004732 5.0e-42 175.3 214 51.4
Glyma.10G027800 Glycine max HOM05D004016 ORTHO05D004732 1.5e-41 173.7 219 54.8
Sabra02G0041700 Salix brachista HOM05D004016 ORTHO05D004732 1.5e-41 173.7 226 50.9
Gohir.D08G204600 Gossypium hirsutum HOM05D004016 ORTHO05D004732 1.9e-41 173.3 210 49.5
Gorai.004G216600 Gossypium raimondii HOM05D004016 ORTHO05D004732 1.9e-41 173.3 210 49.5
Nitab4.5_0002928g0010 Nicotiana tabacum HOM05D004016 ORTHO05D004732 1.9e-41 173.3 207 50.7
Migut.N02038 Erythranthe guttata HOM05D004016 ORTHO05D004732 4.2e-41 172.2 216 51.4
Psat3g063280 Pisum sativum HOM05D004016 ORTHO05D004732 4.2e-41 172.2 210 53.3
PGSC0003DMG400019358 Solanum tuberosum HOM05D004016 ORTHO05D004732 4.2e-41 172.2 214 51.9
HanXRQChr04g0118991 Helianthus annuus HOM05D004016 ORTHO05D004732 7.2e-41 171.4 223 49.8
Lj5g0005099 Lotus japonicus HOM05D004016 ORTHO05D004732 2.7e-40 169.5 216 48.1
Oeu040656.1 Olea europaea HOM05D004016 ORTHO05D004732 2.7e-40 169.5 218 48.2
Migut.D00318 Erythranthe guttata HOM05D004016 ORTHO05D004732 8.0e-40 167.9 213 49.8
TPR.G27140 Trifolium pratense HOM05D004016 ORTHO05D004732 8.0e-40 167.9 211 48.3
Oeu025739.1 Olea europaea HOM05D004016 ORTHO05D004732 1.0e-39 167.5 217 50.2
Medtr7g095160 Medicago truncatula HOM05D004016 ORTHO05D004732 3.0e-39 166.0 210 51.9
Sc17g0001350 Simmondsia chinensis HOM05D004016 ORTHO05D004732 4.0e-39 165.6 207 50.7
DCAR_018429 Daucus carota HOM05D004016 ORTHO05D004732 6.8e-39 164.9 243 49.0
AUR62028601 Chenopodium quinoa HOM05D004016 ORTHO05D004732 1.2e-38 164.1 215 49.3
CiPaw.08G107200 Carya illinoinensis HOM05D004016 ORTHO05D004732 1.5e-38 163.7 184 51.6
Hund02825 Selenicereus undatus HOM05D004016 ORTHO05D004732 1.5e-38 163.7 221 48.0
Glyma.03G155700 Glycine max HOM05D004016 ORTHO05D004732 4.4e-38 162.2 214 51.9
QL12p021105 Quercus lobata HOM05D004016 ORTHO05D004732 4.4e-38 162.2 236 48.3
CAN.G1549.22 Capsicum annuum HOM05D004016 ORTHO05D004732 7.5e-38 161.4 217 47.5
Gohir.A11G124100 Gossypium hirsutum HOM05D004016 ORTHO05D004732 7.5e-38 161.4 211 47.9
Phvul.001G153100 Phaseolus vulgaris HOM05D004016 ORTHO05D004732 7.5e-38 161.4 210 50.0
Oeu028065.1 Olea europaea HOM05D004016 ORTHO05D004732 1.3e-37 160.6 229 46.7
Hund27940 Selenicereus undatus HOM05D004016 ORTHO05D004732 1.3e-37 160.6 218 48.2
Glyma.19G157800 Glycine max HOM05D004016 ORTHO05D004732 1.7e-37 160.2 213 51.2
Psat6g059840 Pisum sativum HOM05D004016 ORTHO05D004732 1.7e-37 160.2 199 51.8
CAN.G1549.11 Capsicum annuum HOM05D004016 ORTHO05D004732 2.2e-37 159.8 217 46.1
DCAR_002723 Daucus carota HOM05D004016 ORTHO05D004732 2.2e-37 159.8 227 47.1
VMungo1383G1854 Vigna mungo HOM05D004016 ORTHO05D004732 2.8e-37 159.5 213 50.2
Aa31LG5G2350 Aethionema arabicum HOM05D004016 ORTHO05D004732 3.7e-37 159.1 213 46.0
MSTRG.17454 Avicennia marina HOM05D004016 ORTHO05D004732 3.7e-37 159.1 215 47.4
Peaxi162Scf01248g00010 Petunia axillaris HOM05D004016 ORTHO05D004732 6.3e-37 158.3 206 49.5
VMungo0720G0880 Vigna mungo HOM05D004016 ORTHO05D004732 8.3e-37 157.9 197 53.8
Aqoxy5G00450 Aquilegia oxysepala HOM05D004016 ORTHO05D004732 1.4e-36 157.1 210 49.0
PSO761G0274 Papaver somniferum HOM05D004016 ORTHO05D004732 9.1e-36 154.5 224 49.6
CAN.G1549.21 Capsicum annuum HOM05D004016 ORTHO05D004732 1.2e-35 154.1 217 46.1
Nitab4.5_0005172g0030 Nicotiana tabacum HOM05D004016 ORTHO05D004732 1.2e-35 154.1 209 48.3
Nitab4.5_0008064g0020 Nicotiana tabacum HOM05D004016 ORTHO05D004732 2.0e-35 153.3 207 49.3
Gorai.007G138300 Gossypium raimondii HOM05D004016 ORTHO05D004732 2.7e-35 152.9 212 45.8
CARHR251020 Cardamine hirsuta HOM05D004016 ORTHO05D004732 1.0e-34 151.0 215 47.4
ECA236G1435 Erigeron canadensis HOM05D004016 ORTHO05D004732 1.7e-34 150.2 210 49.0
PGR044G0005 Punica granatum HOM05D004016 ORTHO05D004732 2.9e-34 149.4 218 47.7
ClCG09G007200 Citrullus lanatus HOM05D004016 ORTHO05D004732 3.8e-34 149.1 210 49.0
Peaxi162Scf00783g00017 Petunia axillaris HOM05D004016 ORTHO05D004732 3.8e-34 149.1 215 44.7
AT4G02715 Arabidopsis thaliana HOM05D004016 ORTHO05D004732 5.0e-34 148.7 214 47.7
Gohir.D11G129300 Gossypium hirsutum HOM05D004016 ORTHO05D004732 6.5e-34 148.3 212 44.3
vmacro02591 Vaccinium macrocarpon HOM05D004016 ORTHO05D004732 6.5e-34 148.3 176 54.5
Sp6g02620 Schrenkiella parvula HOM05D004016 ORTHO05D004732 8.6e-34 147.9 219 46.6
Sopen06g035580 Solanum pennellii HOM05D004016 ORTHO05D004732 2.5e-33 146.4 215 44.2
TPR.G24294 Trifolium pratense HOM05D004016 ORTHO05D004732 3.3e-33 146.0 223 47.5
AL6G50300 Arabidopsis lyrata HOM05D004016 ORTHO05D004732 4.2e-33 145.6 215 46.5
SGA_v2.0_scaffold138G35322 Striga asiatica HOM05D004016 ORTHO05D004732 4.2e-33 145.6 178 52.2
Carub.0006s3440 Capsella rubella HOM05D004016 ORTHO05D004732 1.2e-32 144.1 216 47.2
Thhalv10028968m.g Eutrema salsugineum HOM05D004016 ORTHO05D004732 2.1e-32 143.3 218 46.8
Solyc06g084200.2 Solanum lycopersicum HOM05D004016 ORTHO05D004732 2.1e-32 143.3 214 44.4
Nitab4.5_0009529g0030 Nicotiana tabacum HOM05D004016 ORTHO05D004732 1.0e-31 141.0 188 47.3
SGA_v2.0_scaffold1G00497 Striga asiatica HOM05D004016 ORTHO05D004732 4.0e-31 139.0 203 46.3
PGSC0003DMG400020056 Solanum tuberosum HOM05D004016 ORTHO05D004732 6.8e-31 138.3 216 44.4
PSO210G5515 Papaver somniferum HOM05D004016 ORTHO05D004732 8.9e-31 137.9 224 46.0
Actinidia24906 Actinidia chinensis HOM05D004016 ORTHO05D004732 1.2e-30 137.5 182 47.8
Medtr1g071810 Medicago truncatula HOM05D004016 ORTHO05D004732 2.2e-29 133.3 306 34.0
Rhsim13G0026600 Rhododendron simsii HOM05D004016 ORTHO05D004732 1.4e-28 130.6 175 49.1
BcaB01g02015 Brassica carinata HOM05D004016 ORTHO05D004732 1.8e-28 130.2 213 46.5
Aqoxy2G03410 Aquilegia oxysepala HOM05D004016 ORTHO05D004732 4.1e-28 129.0 203 43.8
BcaC04g24008 Brassica carinata HOM05D004016 ORTHO05D004732 4.1e-28 129.0 209 42.6
C09p02200 Brassica napus HOM05D004016 ORTHO05D004732 4.1e-28 129.0 204 43.6
BolC9t53149H Brassica oleracea HOM05D004016 ORTHO05D004732 4.1e-28 129.0 209 42.6
C02p39140 Brassica napus HOM05D004016 ORTHO05D004732 2.7e-27 126.3 203 44.8
CsaV3_7G027970 Cucumis sativus L. HOM05D004016 ORTHO05D004732 7.8e-27 124.8 214 44.9
Psat1g067520 Pisum sativum HOM05D004016 ORTHO05D004732 2.9e-26 122.9 188 46.3
BcaC03g16166 Brassica carinata HOM05D004016 ORTHO05D004732 3.8e-26 122.5 205 44.4
BcaB05g23659 Brassica carinata HOM05D004016 ORTHO05D004732 1.1e-25 120.9 215 40.9
A09p02110 Brassica napus HOM05D004016 ORTHO05D004732 2.8e-24 116.3 206 41.3
BolC2t09924H Brassica oleracea HOM05D004016 ORTHO05D004732 4.7e-24 115.5 196 42.9
MELO3C015815.2 Cucumis melo HOM05D004016 ORTHO05D004732 1.8e-23 113.6 214 43.9
BraA09t35860Z Brassica rapa HOM05D004016 ORTHO05D004732 2.3e-23 113.2 206 40.8
Sed0001131 Sechium edule HOM05D004016 ORTHO05D004732 4.4e-22 109.0 214 42.5
ATR0697G155 Amborella trichopoda HOM05D004016 ORTHO05D004732 2.9e-21 106.3 279 31.9
Oeu013891.1 Olea europaea HOM05D004016 ORTHO05D004732 4.9e-21 105.5 175 41.7
Oeu034146.1 Olea europaea HOM05D004016 ORTHO05D004732 4.9e-21 105.5 186 38.2
HPP92_013967 Vanilla planifolia HOM05D004016 ORTHO05D004732 4.1e-20 102.4 207 38.2
Zm00001eb403300 Zea mays HOM05D004016 ORTHO05D004732 9.2e-20 101.3 214 39.3
ECA247G1708 Erigeron canadensis HOM05D004016 ORTHO05D004732 1.6e-19 100.5 212 36.8
Zm00001eb047890 Zea mays HOM05D004016 ORTHO05D004732 7.8e-19 98.2 161 42.9
Os03g0160200 Oryza sativa ssp. japonica HOM05D004016 ORTHO05D004732 2.3e-18 96.7 202 39.1
unitig_0.g129 Utricularia gibba HOM05D004016 ORTHO05D004732 3.0e-18 96.3 151 43.7
Gorai.009G456000 Gossypium raimondii HOM05D004016 ORTHO05D004732 7.3e-17 91.7 136 45.6
A03p30890 Brassica napus HOM05D004016 ORTHO05D004732 2.1e-16 90.1 87 57.5
A02p24930 Brassica napus HOM05D004016 ORTHO05D004732 1.2e-14 84.3 183 38.8
BraA02t07483Z Brassica rapa HOM05D004016 ORTHO05D004732 2.0e-14 83.6 183 38.8
SEGI_39625 Sequoiadendron giganteum HOM05D004016 ORTHO05D004732 2.4e-12 76.6 98 48.0
BcaC01g06736 Brassica carinata HOM05D002144 ORTHO05D002170 3.2e-12 76.3 83 55.4
GSVIVG01001172001 Vitis vinifera HOM05D004016 ORTHO05D004732 2.3e-10 70.1 52 65.4
VMungo1383G2032 Vigna mungo HOM05D004016 ORTHO05D004732 5.0e-10 68.9 70 60.0
BcaC01g06738 Brassica carinata HOM05D004016 ORTHO05D004732 1.1e-09 67.8 46 67.4
Nn4g22231 Nelumbo nucifera HOM05D004016 ORTHO05D004732 2.5e-09 66.6 49 61.2
SEGI_04941 Sequoiadendron giganteum HOM05D004016 ORTHO05D004732 5.2e-07 58.9 84 42.9
Mapoly0128s0012 Marchantia polymorpha HOM05D004016 ORTHO05D004732 1.2e-06 57.8 145 35.2
SMO134G0037 Selaginella moellendorffii HOM05D004016 ORTHO05D004732 2.0e-06 57.0 146 37.7


User provided reference genes

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