Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN27G2643 Fragaria x ananassa HOM05D016859 ORTHO05D010367 0.0e+00 1640.2 792 100.0
FAN15G1208 Fragaria x ananassa HOM05D016859 ORTHO05D010367 0.0e+00 1525.4 792 93.1
FvH4_2g19950 Fragaria vesca HOM05D016859 ORTHO05D010367 0.0e+00 1464.1 792 90.2
FAN24G1655 Fragaria x ananassa HOM05D016859 ORTHO05D010367 0.0e+00 1457.2 792 90.0
RcHm_v2.0_Chr6g0285611 Rosa chinensis HOM05D016859 ORTHO05D010367 5.0e-308 1060.8 873 64.5
Prupe.8G209900 Prunus persica HOM05D016859 ORTHO05D010367 2.4e-116 424.1 647 39.4
MD10G1171500 Malus domestica HOM05D016859 ORTHO05D010367 1.0e-79 302.4 512 37.1
Cfa002512 Carpinus fangiana HOM05D009210 ORTHO05D010367 3.3e-49 201.1 605 29.8
QL07p009176 Quercus lobata HOM05D009210 ORTHO05D010367 2.3e-42 178.3 812 26.0
QL09p043508 Quercus lobata HOM05D009210 ORTHO05D010367 2.3e-42 178.3 812 26.0
QL09p043653 Quercus lobata HOM05D009210 ORTHO05D010367 9.5e-41 172.9 815 26.3
Manes.13G042500 Manihot esculenta HOM05D009210 ORTHO05D010367 8.1e-40 169.9 445 32.6
QL09p043802 Quercus lobata HOM05D009210 ORTHO05D010367 1.4e-39 169.1 814 26.2
MD10G1171600 Malus domestica HOM05D016859 ORTHO05D010367 2.4e-31 141.7 214 46.3
CANSAT01G1047 Cannabis sativa HOM05D009210 ORTHO05D010367 3.1e-31 141.4 506 28.1
Ciclev10019870m.g Citrus clementina HOM05D009210 ORTHO05D010367 3.1e-31 141.4 583 24.7
Dinv19248 Davidia involucrata HOM05D009210 ORTHO05D010367 1.3e-26 125.9 363 27.0
TWI59G1397 Tripterygium wilfordii HOM05D009210 ORTHO05D010367 2.3e-26 125.2 839 22.8
Haze_24738 Corylus avellana HOM05D009210 ORTHO05D010367 1.6e-24 119.0 309 29.8
Lj1A79G19 Lonicera japonica HOM05D009210 ORTHO05D010367 1.6e-24 119.0 454 29.3
QL09p043642 Quercus lobata HOM05D009210 ORTHO05D010367 1.5e-22 112.5 452 27.2
Actinidia30107 Actinidia chinensis HOM05D009210 ORTHO05D010367 2.0e-22 112.1 452 27.7
Thecc.01G245200 Theobroma cacao HOM05D009210 ORTHO05D010367 9.9e-22 109.8 542 24.5
Nn3g19852 Nelumbo nucifera HOM05D009210 ORTHO05D010367 1.9e-20 105.5 671 25.0
Duzib211G0683 Durio zibethinus HOM05D009210 ORTHO05D010367 2.1e-19 102.1 419 26.5
Gohir.D07G208750 Gossypium hirsutum HOM05D009210 ORTHO05D010367 1.8e-18 99.0 584 24.1
Gohir.A07G202550 Gossypium hirsutum HOM05D009210 ORTHO05D010367 7.4e-17 93.6 362 26.5
Lj5g0020428 Lotus japonicus HOM05D014010 ORTHO05D010367 7.4e-17 93.6 739 23.8
Oeu052100.2 Olea europaea HOM05D013334 ORTHO05D015998 2.0e-14 85.5 414 26.1
Medtr1g069195 Medicago truncatula HOM05D014010 ORTHO05D010367 7.6e-14 83.6 316 27.5
Cpa.g.sc8.212 Carica papaya HOM05D009210 ORTHO05D010367 9.9e-14 83.2 154 37.7
CSS0048272 Camellia sinensis var. sinensis HOM05D009210 ORTHO05D010367 3.8e-13 81.3 235 28.9
ClCG09G009440 Citrullus lanatus HOM05D026148 ORTHO05D010367 4.9e-13 80.9 218 30.7
Gorai.001G235700 Gossypium raimondii HOM05D009210 ORTHO05D010367 4.9e-13 80.9 365 25.8
Ca_09627_v3 Cicer arietinum L. HOM05D014010 ORTHO05D010367 2.4e-12 78.6 790 24.1
TPR.G25869 Trifolium pratense HOM05D014010 ORTHO05D010367 4.2e-12 77.8 320 27.2
Sed0006753 Sechium edule HOM05D026148 ORTHO05D010367 1.5e-09 69.3 278 27.3
arahy.Tifrunner.gnm1.ann1.201IN6 Arachis hypogaea HOM05D014010 ORTHO05D010367 1.9e-09 68.9 400 23.0
COL.COLO4_08165 Corchorus olitorius HOM05D009210 ORTHO05D010367 1.9e-09 68.9 292 27.1
Lalb_Chr02g0152931 Lupinus albus HOM05D014010 ORTHO05D010367 4.3e-09 67.8 272 28.3
Psat6g065120 Pisum sativum HOM05D014010 ORTHO05D010367 4.3e-09 67.8 279 28.0
CiPaw.04G192300 Carya illinoinensis HOM05D009210 ORTHO05D010367 3.7e-08 64.7 190 27.4
MSTRG.17532 Avicennia marina HOM05D013334 ORTHO05D015998 1.1e-07 63.2 262 27.5
A09p12760 Brassica napus HOM05D012015 ORTHO05D014750 1.1e-07 63.2 242 27.3
ECA236G3347 Erigeron canadensis HOM05D040207 ORTHO05D010367 1.1e-07 63.2 481 24.1
Atru.chr5.1921 Acer truncatum HOM05D009210 ORTHO05D010367 3.1e-07 61.6 198 31.3
AT2G20250 Arabidopsis thaliana HOM05D012015 ORTHO05D014750 4.0e-07 61.2 244 28.3
AL3G47840 Arabidopsis lyrata HOM05D012015 ORTHO05D014750 6.9e-07 60.5 244 29.1
BraA09t36920Z Brassica rapa HOM05D012015 ORTHO05D014750 9.0e-07 60.1 246 28.0
PGR044G0436 Punica granatum HOM05D009210 ORTHO05D010367 1.2e-06 59.7 117 33.3
MELO3C024146.2 Cucumis melo HOM05D026148 ORTHO05D010367 1.5e-06 59.3 361 23.0
THA.LOC104814711 Tarenaya hassleriana HOM05D012015 ORTHO05D014750 2.6e-06 58.5 244 27.9
Carub.0003s3458 Capsella rubella HOM05D012015 ORTHO05D014750 5.8e-06 57.4 244 27.9
CARHR110740 Cardamine hirsuta HOM05D012015 ORTHO05D014750 5.8e-06 57.4 272 26.8
Atru.chr5.1922 Acer truncatum HOM05D009210 ORTHO05D010367 7.6e-06 57.0 167 28.7
CsaV3_7G025420 Cucumis sativus L. HOM05D026148 ORTHO05D010367 7.6e-06 57.0 212 26.4
Sp3g33480 Schrenkiella parvula HOM05D012015 ORTHO05D014750 1.0e-05 56.6 273 26.7
SGA_v2.0_scaffold3G01596 Striga asiatica HOM05D009210 ORTHO05D015998 1.0e-05 56.6 86 37.2


User provided reference genes

Program Settings