Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN27G2619 Fragaria x ananassa HOM05D004672 ORTHO05D005732 0.0e+00 2256.1 1240 100.0
FAN24G1132 Fragaria x ananassa HOM05D004672 ORTHO05D005732 0.0e+00 2201.0 1244 96.0
FAN20G2876 Fragaria x ananassa HOM05D004672 ORTHO05D005732 0.0e+00 2196.8 1240 95.2
FvH4_2g11160 Fragaria vesca HOM05D004672 ORTHO05D005732 0.0e+00 2188.7 1258 94.5
FAN15G2368 Fragaria x ananassa HOM05D004672 ORTHO05D005732 0.0e+00 2127.8 1224 93.2
RcHm_v2.0_Chr6g0269481 Rosa chinensis HOM05D004672 ORTHO05D005732 0.0e+00 2051.2 1264 88.5
MD10G1056900 Malus domestica HOM05D004672 ORTHO05D005732 0.0e+00 1820.4 1212 80.4
Prupe.8G075100 Prunus persica HOM05D004672 ORTHO05D005732 0.0e+00 1791.2 1211 81.3
MD05G1049800 Malus domestica HOM05D004672 ORTHO05D005732 0.0e+00 1776.5 1212 79.8
CiPaw.06G160900 Carya illinoinensis HOM05D004672 ORTHO05D005732 0.0e+00 1590.9 1285 66.5
Cfa004803 Carpinus fangiana HOM05D004672 ORTHO05D005732 0.0e+00 1584.7 1245 69.0
CSS0000676 Camellia sinensis var. sinensis HOM05D004672 ORTHO05D005732 0.0e+00 1562.0 1204 69.7
CSS0013617 Camellia sinensis var. sinensis HOM05D004672 ORTHO05D005732 0.0e+00 1560.4 1203 70.4
QL11p026607 Quercus lobata HOM05D004672 ORTHO05D005732 0.0e+00 1560.0 1318 66.0
Manes.10G094200 Manihot esculenta HOM05D004672 ORTHO05D005732 0.0e+00 1558.1 1207 69.3
Duzib132G0551 Durio zibethinus HOM05D004672 ORTHO05D005732 0.0e+00 1550.0 1205 69.3
Ciclev10027696m.g Citrus clementina HOM05D004672 ORTHO05D005732 0.0e+00 1549.6 1215 67.7
Lj9C342T12 Lonicera japonica HOM05D004672 ORTHO05D005732 0.0e+00 1546.9 1206 70.3
Actinidia02411 Actinidia chinensis HOM05D004672 ORTHO05D005732 0.0e+00 1540.0 1205 68.9
Potri.009G079900 Populus trichocarpa HOM05D004672 ORTHO05D005732 0.0e+00 1536.9 1227 67.9
Thecc.02G125000 Theobroma cacao HOM05D004672 ORTHO05D005732 0.0e+00 1527.7 1212 68.0
Haze_10395 Corylus avellana HOM05D004672 ORTHO05D005732 0.0e+00 1526.5 1266 66.1
Glyma.13G254600 Glycine max HOM05D004672 ORTHO05D005732 0.0e+00 1524.2 1210 66.9
CANSAT54G0310 Cannabis sativa HOM05D004672 ORTHO05D005732 0.0e+00 1521.1 1173 69.8
ClCG09G016480 Citrullus lanatus HOM05D004672 ORTHO05D005732 0.0e+00 1520.0 1250 67.3
Hma1.2p1_0908F.1_g235670 Hydrangea macrophylla HOM05D004672 ORTHO05D005732 0.0e+00 1519.6 1208 67.8
Sed0014665 Sechium edule HOM05D004672 ORTHO05D005732 0.0e+00 1515.4 1209 66.4
arahy.Tifrunner.gnm1.ann1.BVLY6P Arachis hypogaea HOM05D004672 ORTHO05D005732 0.0e+00 1512.7 1197 67.5
GSVIVG01038520001 Vitis vinifera HOM05D004672 ORTHO05D005732 0.0e+00 1506.5 1205 70.8
Glyma.15G060100 Glycine max HOM05D004672 ORTHO05D005732 0.0e+00 1503.8 1207 66.9
vmacro19391 Vaccinium macrocarpon HOM05D004672 ORTHO05D005732 0.0e+00 1501.5 1228 66.9
TWI59G0488 Tripterygium wilfordii HOM05D004672 ORTHO05D005732 0.0e+00 1493.8 1197 65.9
arahy.Tifrunner.gnm1.ann1.GE1IDC Arachis hypogaea HOM05D004672 ORTHO05D005732 0.0e+00 1492.2 1213 66.3
Gohir.D13G048000 Gossypium hirsutum HOM05D004672 ORTHO05D005732 0.0e+00 1491.5 1196 67.1
Sed0001753 Sechium edule HOM05D004672 ORTHO05D005732 0.0e+00 1490.7 1248 63.9
MSTRG.16633 Avicennia marina HOM05D004672 ORTHO05D005732 0.0e+00 1489.9 1210 65.9
Gorai.013G053600 Gossypium raimondii HOM05D004672 ORTHO05D005732 0.0e+00 1489.9 1201 67.5
Lalb_Chr18g0060301 Lupinus albus HOM05D004672 ORTHO05D005732 0.0e+00 1487.2 1203 66.6
Phvul.006G199700 Phaseolus vulgaris HOM05D004672 ORTHO05D005732 0.0e+00 1487.2 1199 66.6
Potri.001G285600 Populus trichocarpa HOM05D004672 ORTHO05D005732 0.0e+00 1486.5 1219 66.9
Ca_00181_v3 Cicer arietinum L. HOM05D004672 ORTHO05D005732 0.0e+00 1485.7 1203 67.1
Gohir.A13G049500 Gossypium hirsutum HOM05D004672 ORTHO05D005732 0.0e+00 1483.4 1207 67.4
TAR628G0793 Trochodendron aralioides HOM05D004672 ORTHO05D005732 0.0e+00 1482.6 1203 66.6
Cc02_g20590 Coffea canephora HOM05D004672 ORTHO05D005732 0.0e+00 1479.2 1198 66.1
MELO3C018559.2 Cucumis melo HOM05D004672 ORTHO05D005732 0.0e+00 1474.1 1240 66.0
Psat1g212840 Pisum sativum HOM05D004672 ORTHO05D005732 0.0e+00 1469.5 1206 65.1
CsaV3_7G007430 Cucumis sativus L. HOM05D004672 ORTHO05D005732 0.0e+00 1467.2 1240 64.3
Eucgr.I02582 Eucalyptus grandis HOM05D004672 ORTHO05D005732 0.0e+00 1466.8 1189 67.6
VMungo0540G1852 Vigna mungo HOM05D004672 ORTHO05D005732 0.0e+00 1459.5 1203 64.3
Sabra09G0061900 Salix brachista HOM05D004672 ORTHO05D005732 0.0e+00 1458.4 1224 65.4
Sabra16G0178000 Salix brachista HOM05D004672 ORTHO05D005732 0.0e+00 1454.9 1266 63.9
Lj6g0005540 Lotus japonicus HOM05D004672 ORTHO05D005732 0.0e+00 1448.3 1265 63.8
Medtr2g010110 Medicago truncatula HOM05D004672 ORTHO05D005732 0.0e+00 1448.0 1206 64.1
Hund06479 Selenicereus undatus HOM05D004672 ORTHO05D005732 0.0e+00 1446.8 1224 62.7
EL10Ac9g22127 Beta vulgaris HOM05D004672 ORTHO05D005732 0.0e+00 1434.9 1228 62.5
Nn1g07286 Nelumbo nucifera HOM05D004672 ORTHO05D005732 0.0e+00 1429.8 1185 64.0
SalBow6G5524 Salvia bowleyana HOM05D004672 ORTHO05D005732 0.0e+00 1421.4 1172 64.8
DCAR_021895 Daucus carota HOM05D004672 ORTHO05D005732 0.0e+00 1418.3 1257 61.2
Migut.B00522 Erythranthe guttata HOM05D004672 ORTHO05D005732 0.0e+00 1411.0 1181 64.4
Lsat_1_v5_gn_9_113661 Lactuca sativa HOM05D004672 ORTHO05D005732 0.0e+00 1394.0 1200 63.7
Lsat_1_v5_gn_9_113760 Lactuca sativa HOM05D004672 ORTHO05D005732 0.0e+00 1391.7 1197 63.7
CAN.G504.43 Capsicum annuum HOM05D004672 ORTHO05D005732 0.0e+00 1388.6 1207 62.5
Aqoxy6G00637 Aquilegia oxysepala HOM05D004672 ORTHO05D005732 0.0e+00 1384.8 1183 62.8
Nitab4.5_0005163g0020 Nicotiana tabacum HOM05D004672 ORTHO05D005732 0.0e+00 1379.8 1238 61.1
HanXRQChr03g0071051 Helianthus annuus HOM05D004672 ORTHO05D005732 0.0e+00 1372.1 1213 63.6
AUR62027080 Chenopodium quinoa HOM05D004672 ORTHO05D005732 0.0e+00 1370.5 1219 60.1
ECA240G2418 Erigeron canadensis HOM05D004672 ORTHO05D005732 0.0e+00 1369.0 1179 65.1
AUR62030919 Chenopodium quinoa HOM05D004672 ORTHO05D005732 0.0e+00 1358.6 1219 59.8
SGA_v2.0_scaffold83G26394 Striga asiatica HOM05D004672 ORTHO05D005732 0.0e+00 1358.6 1198 61.5
Nitab4.5_0002335g0010 Nicotiana tabacum HOM05D004672 ORTHO05D005732 0.0e+00 1351.7 1275 59.3
Aa31LG1G17480 Aethionema arabicum HOM05D004672 ORTHO05D005732 0.0e+00 1350.1 1227 62.6
PGR142G1680 Punica granatum HOM05D004672 ORTHO05D005732 0.0e+00 1350.1 1212 61.3
Sopen01g048630 Solanum pennellii HOM05D004672 ORTHO05D005732 0.0e+00 1343.6 1189 61.7
Carub.0008s2522 Capsella rubella HOM05D004672 ORTHO05D005732 0.0e+00 1341.3 1251 58.4
Oeu042393.4 Olea europaea HOM05D004672 ORTHO05D005732 0.0e+00 1340.5 1204 61.6
Oeu033795.2 Olea europaea HOM05D004672 ORTHO05D005732 0.0e+00 1339.7 1223 60.4
Sp2g27510 Schrenkiella parvula HOM05D004672 ORTHO05D005732 0.0e+00 1336.6 1223 60.6
Solyc01g106220.4 Solanum lycopersicum HOM05D004672 ORTHO05D005732 0.0e+00 1331.6 1197 61.0
THA.LOC104799703 Tarenaya hassleriana HOM05D004672 ORTHO05D005732 0.0e+00 1329.7 1174 61.0
Thhalv10003522m.g Eutrema salsugineum HOM05D004672 ORTHO05D005732 0.0e+00 1323.9 1191 60.8
CARHR278390 Cardamine hirsuta HOM05D004672 ORTHO05D005732 0.0e+00 1321.2 1195 60.3
PGSC0003DMG400010676 Solanum tuberosum HOM05D004672 ORTHO05D005732 0.0e+00 1319.7 1194 61.1
BraA06t26051Z Brassica rapa HOM05D004672 ORTHO05D005732 0.0e+00 1309.7 1227 60.3
AL8G41790 Arabidopsis lyrata HOM05D004672 ORTHO05D005732 0.0e+00 1307.4 1231 58.4
A06p31080 Brassica napus HOM05D004672 ORTHO05D005732 0.0e+00 1303.9 1194 61.1
C03p61860 Brassica napus HOM05D004672 ORTHO05D005732 0.0e+00 1301.6 1191 60.5
BolC3t18446H Brassica oleracea HOM05D004672 ORTHO05D005732 0.0e+00 1301.6 1191 60.5
AT5G64420 Arabidopsis thaliana HOM05D004672 ORTHO05D005732 0.0e+00 1300.0 1206 59.0
MBI16_g10454_MAGBIO Magnolia biondii HOM05D004672 ORTHO05D005732 0.0e+00 1290.4 1288 56.8
TPR.G32637 Trifolium pratense HOM05D004672 ORTHO05D005732 0.0e+00 1280.8 1218 58.5
Sc06g0005830 Simmondsia chinensis HOM05D004672 ORTHO05D005732 0.0e+00 1274.2 1086 62.4
PSO478G3191 Papaver somniferum HOM05D004672 ORTHO05D005732 0.0e+00 1258.8 1211 58.1
THA.LOC104818461 Tarenaya hassleriana HOM05D004672 ORTHO05D005732 0.0e+00 1248.0 1215 56.9
PSO017G1610 Papaver somniferum HOM05D004672 ORTHO05D005732 0.0e+00 1242.3 1174 58.7
Duzib132G1253 Durio zibethinus HOM05D004672 ORTHO05D005732 0.0e+00 1238.0 1208 59.5
Peaxi162Scf00016g03257 Petunia axillaris HOM05D004672 ORTHO05D005732 0.0e+00 1177.9 1223 54.8
unitig_744.g24197 Utricularia gibba HOM05D004672 ORTHO05D005732 0.0e+00 1152.9 1177 55.2
Peaxi162Scf00016g03462 Petunia axillaris HOM05D004672 ORTHO05D005732 0.0e+00 1128.2 1245 52.4
Nitab4.5_0005163g0030 Nicotiana tabacum HOM05D004672 ORTHO05D005732 0.0e+00 1124.0 1187 53.9
Actinidia00323 Actinidia chinensis HOM05D004672 ORTHO05D005732 0.0e+00 1107.4 946 64.9
HPP92_024099 Vanilla planifolia HOM05D004672 ORTHO05D005732 0.0e+00 1102.0 1245 50.1
SHI04921 Sapria himalayana HOM05D004672 ORTHO05D005732 0.0e+00 1100.5 1189 51.6
CDE05G2025 Ceratophyllum demersum HOM05D004672 ORTHO05D005732 0.0e+00 1088.9 1184 50.7
Ah.01g024170 Amaranthus hybridus HOM05D004672 ORTHO05D005732 0.0e+00 1081.2 1037 58.0
ATR0800G038 Amborella trichopoda HOM05D004672 ORTHO05D005732 2.7e-300 1035.8 1210 49.9
Dinv08968 Davidia involucrata HOM05D004672 ORTHO05D005732 1.3e-291 1006.9 714 73.0
Os02g0135700 Oryza sativa ssp. japonica HOM05D004672 ORTHO05D005732 6.2e-289 998.0 1236 47.7
Zm00001eb231630 Zea mays HOM05D004672 ORTHO05D005732 5.5e-285 984.9 1222 47.7
Atru.chr6.1353 Acer truncatum HOM05D004672 ORTHO05D005732 3.1e-256 889.4 622 73.6
Cpa.g.sc20.40 Carica papaya HOM05D004672 ORTHO05D005732 8.5e-254 881.3 1217 45.9
SEGI_31749 Sequoiadendron giganteum HOM05D004672 ORTHO05D005732 3.9e-214 749.6 1113 42.7
Dinv16031 Davidia involucrata HOM05D004672 ORTHO05D005732 1.9e-176 624.4 429 73.2
Atru.chr6.1354 Acer truncatum HOM05D004672 ORTHO05D005732 2.9e-169 600.5 538 64.9
vmacro06228 Vaccinium macrocarpon HOM05D004672 ORTHO05D005732 2.4e-155 554.3 863 44.5
Dinv08967 Davidia involucrata HOM05D004672 ORTHO05D005732 5.9e-154 549.7 452 66.8
Dinv16032 Davidia involucrata HOM05D004672 ORTHO05D005732 1.1e-147 528.9 539 57.9
BcaB07g29742 Brassica carinata HOM05D004672 ORTHO05D005732 2.0e-146 524.6 678 49.7
BcaC03g18261 Brassica carinata HOM05D004672 ORTHO05D005732 2.0e-141 508.1 609 47.8
AagrBONN_evm.TU.Sc2ySwM_368.3324__3325 Anthoceros agrestis HOM05D004672 ORTHO05D005732 3.3e-141 507.3 1191 31.7
Pp3c13_11570 Physcomitrium patens HOM05D004672 ORTHO05D005732 1.8e-139 501.5 1226 33.9
AagrBONN_evm.TU.Sc2ySwM_228.3115__3116 Anthoceros agrestis HOM05D004672 ORTHO05D005732 4.5e-138 496.9 1207 30.7
Pp3c3_9940 Physcomitrium patens HOM05D004672 ORTHO05D005732 5.9e-138 496.5 1237 34.4
SMO358G0564 Selaginella moellendorffii HOM05D004672 ORTHO05D005732 1.1e-120 439.1 1131 30.9
Mapoly0136s0021 Marchantia polymorpha HOM05D004672 ORTHO05D005732 4.2e-120 437.2 1282 31.4
C02p63340 Brassica napus HOM05D004672 ORTHO05D005732 4.7e-95 354.0 1043 31.0
CBR_g52045 Chara braunii HOM05D004672 ORTHO05D005732 1.4e-86 325.9 1288 25.7
BolC2t12404H Brassica oleracea HOM05D004672 ORTHO05D005732 5.2e-86 323.9 1036 29.5
AL8G35270 Arabidopsis lyrata HOM05D004672 ORTHO05D005732 1.8e-78 298.9 247 63.6
BcaC03g18262 Brassica carinata HOM05D004672 ORTHO05D005732 7.6e-77 293.5 330 50.9
Gorai.005G227500 Gossypium raimondii HOM05D004672 ORTHO05D005732 2.4e-75 288.5 479 38.2
Gohir.D02G202550 Gossypium hirsutum HOM05D004672 ORTHO05D005732 1.2e-74 286.2 479 38.2
Nitab4.5_0001405g0010 Nicotiana tabacum HOM05D004672 ORTHO05D005732 6.9e-46 190.7 217 52.1
RcHm_v2.0_Chr1g0357401 Rosa chinensis HOM05D004672 ORTHO05D346782 5.0e-36 157.9 186 49.5
MCO10G087 Micromonas commoda HOM05D004672 ORTHO05D005732 2.7e-34 152.1 1244 24.6
Nitab4.5_0003026g0050 Nicotiana tabacum HOM05D004672 ORTHO05D005732 2.0e-32 146.0 347 31.7
Nitab4.5_0001405g0020 Nicotiana tabacum HOM05D004672 ORTHO05D005732 7.7e-29 134.0 129 54.3
Psat5g050320 Pisum sativum HOM05D004672 ORTHO05D005732 2.9e-28 132.1 92 70.7
C02p63360 Brassica napus HOM05D004672 ORTHO05D005732 5.0e-28 131.3 159 48.4
Cre01.g012350 Chlamydomonas reinhardtii HOM05D004672 ORTHO05D005732 2.7e-26 125.6 1242 23.6
Manes.10G093300 Manihot esculenta HOM05D004672 ORTHO05D005732 2.3e-25 122.5 147 49.0
Medtr2g086320 Medicago truncatula HOM05D004672 ORTHO05D005732 3.0e-17 95.5 112 56.2
Nitab4.5_0001405g0040 Nicotiana tabacum HOM05D004672 ORTHO05D005732 3.0e-17 95.5 119 45.4
C02p63350 Brassica napus HOM05D004672 ORTHO05D005732 2.0e-16 92.8 73 57.5
BraA02t09256Z Brassica rapa HOM05D004672 ORTHO05D005732 2.2e-15 89.4 72 56.9
Lsat_1_v5_gn_8_42860 Lactuca sativa HOM05D004672 ORTHO05D005732 3.1e-14 85.5 69 63.8
Nn8g41203 Nelumbo nucifera HOM05D004672 ORTHO05D005732 4.1e-14 85.1 71 57.7
Nn2g13574 Nelumbo nucifera HOM05D004672 ORTHO05D005732 9.1e-14 84.0 61 70.5
Solyc01g106270.1 Solanum lycopersicum HOM05D004672 ORTHO05D005732 1.2e-13 83.6 190 33.7
Psat0s7528g0040 Pisum sativum HOM05D003881 ORTHO05D004343 5.9e-13 81.3 53 73.6
Psat1g034120 Pisum sativum HOM05D003881 ORTHO05D004343 5.9e-13 81.3 53 73.6
Zm00001eb156660 Zea mays HOM05D004672 ORTHO05D005732 1.7e-12 79.7 95 38.9
VMungo0540G1591 Vigna mungo HOM05D003578 ORTHO05D004021 1.8e-09 69.7 52 59.6
Ah.01g011940 Amaranthus hybridus HOM05D004672 ORTHO05D005732 2.2e-07 62.8 41 65.9
arahy.Tifrunner.gnm1.ann1.F8N9WK Arachis hypogaea HOM05D000158 ORTHO05D000197 4.9e-07 61.6 91 44.0
SGA_v2.0_scaffold32G12947 Striga asiatica HOM05D004672 ORTHO05D005732 8.3e-07 60.8 76 43.4
RcHm_v2.0_Chr6g0274801 Rosa chinensis HOM05D004235 ORTHO05D026109 1.8e-06 59.7 52 61.5


User provided reference genes

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