Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN27G2597 Fragaria x ananassa HOM05D003722 ORTHO05D004589 0.0e+00 1671.4 1015 100.0
FAN24G1820 Fragaria x ananassa HOM05D003722 ORTHO05D004589 0.0e+00 1409.4 1021 87.6
FvH4_2g30970 Fragaria vesca HOM05D003722 ORTHO05D004589 0.0e+00 1404.8 1021 87.3
FAN20G0071 Fragaria x ananassa HOM05D003722 ORTHO05D004589 0.0e+00 1401.3 1015 87.2
RcHm_v2.0_Chr6g0311801 Rosa chinensis HOM05D003722 ORTHO05D004589 0.0e+00 1253.4 1032 76.6
Prupe.1G404200 Prunus persica HOM05D003722 ORTHO05D004589 0.0e+00 1133.6 1026 71.5
MD15G1049900 Malus domestica HOM05D003722 ORTHO05D004589 0.0e+00 1115.9 1020 73.4
MD08G1071300 Malus domestica HOM05D003722 ORTHO05D004589 4.6e-306 1054.7 1021 71.4
Manes.16G085600 Manihot esculenta HOM05D003722 ORTHO05D004589 5.7e-264 914.8 1053 63.1
Potri.018G048700 Populus trichocarpa HOM05D003722 ORTHO05D004589 2.4e-254 882.9 1041 59.7
Haze_18293 Corylus avellana HOM05D003722 ORTHO05D004589 5.3e-254 881.7 1045 61.2
Potri.006G220900 Populus trichocarpa HOM05D003722 ORTHO05D004589 1.2e-250 870.5 1050 62.2
Manes.03G053433 Manihot esculenta HOM05D003722 ORTHO05D004589 1.0e-249 867.5 1047 60.9
QL02p017002 Quercus lobata HOM05D003722 ORTHO05D004589 2.3e-249 866.3 1057 61.2
Sabra18G0046400 Salix brachista HOM05D003722 ORTHO05D004589 3.4e-248 862.4 1041 59.1
CsaV3_4G036040 Cucumis sativus L. HOM05D003722 ORTHO05D004589 2.0e-245 853.2 1025 62.0
ClCG05G015740 Citrullus lanatus HOM05D003722 ORTHO05D004589 1.0e-244 850.9 1048 61.6
TWI32G0253 Tripterygium wilfordii HOM05D003722 ORTHO05D004589 2.2e-244 849.7 1039 59.9
Sabra06G0170700 Salix brachista HOM05D003722 ORTHO05D004589 5.2e-241 838.6 1113 58.5
COL.COLO4_21138 Corchorus olitorius HOM05D003722 ORTHO05D004589 8.8e-241 837.8 1041 59.6
CANSAT25G1471 Cannabis sativa HOM05D003722 ORTHO05D004589 1.2e-240 837.4 1045 61.1
CiPaw.15G091900 Carya illinoinensis HOM05D003722 ORTHO05D004589 2.8e-239 832.8 1024 56.7
Thecc.09G063300 Theobroma cacao HOM05D003722 ORTHO05D004589 1.0e-236 824.3 1030 59.9
Dinv02138 Davidia involucrata HOM05D003722 ORTHO05D004589 2.8e-234 816.2 1083 55.0
GSVIVG01035469001 Vitis vinifera HOM05D003722 ORTHO05D004589 4.7e-234 815.5 900 63.0
TWI34G0168 Tripterygium wilfordii HOM05D003722 ORTHO05D004589 1.0e-233 814.3 1032 60.4
Gohir.D07G019500 Gossypium hirsutum HOM05D003722 ORTHO05D004589 1.4e-233 813.9 1038 59.1
Gohir.A07G019700 Gossypium hirsutum HOM05D003722 ORTHO05D004589 6.8e-233 811.6 1043 58.7
Ciclev10007327m.g Citrus clementina HOM05D003722 ORTHO05D004589 8.3e-231 804.7 1041 58.8
Duzib187G0791 Durio zibethinus HOM05D003722 ORTHO05D004589 1.4e-230 803.9 1035 58.1
TAR636G3697 Trochodendron aralioides HOM05D003722 ORTHO05D004589 1.8e-230 803.5 914 59.5
Gorai.001G020200 Gossypium raimondii HOM05D003722 ORTHO05D004589 5.4e-230 802.0 1038 58.4
Dinv41842 Davidia involucrata HOM05D003722 ORTHO05D004589 4.5e-229 798.9 1035 60.1
arahy.Tifrunner.gnm1.ann1.JX1TK4 Arachis hypogaea HOM05D003722 ORTHO05D004589 2.9e-228 796.2 921 65.1
Nitab4.5_0000446g0200 Nicotiana tabacum HOM05D003722 ORTHO05D004589 1.1e-227 794.3 1036 55.8
CSS0013734 Camellia sinensis var. sinensis HOM05D003722 ORTHO05D004589 7.3e-227 791.6 1046 59.4
TAR624G1180 Trochodendron aralioides HOM05D003722 ORTHO05D004589 1.6e-226 790.4 919 63.3
Medtr1g015450 Medicago truncatula HOM05D003722 ORTHO05D004589 2.6e-224 783.1 1019 59.3
Glyma.06G055800 Glycine max HOM05D003722 ORTHO05D004589 4.4e-224 782.3 920 63.3
MELO3C016912.2 Cucumis melo HOM05D003722 ORTHO05D004589 1.6e-221 773.9 1001 55.4
VMungo0647G1341 Vigna mungo HOM05D003722 ORTHO05D004589 4.6e-221 772.3 1012 58.5
Lalb_Chr23g0267971 Lupinus albus HOM05D003722 ORTHO05D004589 1.7e-220 770.4 913 59.4
Duzib168G1968 Durio zibethinus HOM05D003722 ORTHO05D004589 1.9e-219 766.9 1038 52.7
Hma1.2p1_0836F.1_g225970 Hydrangea macrophylla HOM05D003722 ORTHO05D004589 4.3e-219 765.8 1017 58.6
Lj5g0007526 Lotus japonicus HOM05D003722 ORTHO05D004589 1.2e-218 764.2 927 63.8
Sed0027838 Sechium edule HOM05D003722 ORTHO05D004589 1.2e-218 764.2 877 66.1
Phvul.009G081900 Phaseolus vulgaris HOM05D003722 ORTHO05D004589 6.2e-218 761.9 921 62.2
Sc23g0004200 Simmondsia chinensis HOM05D003722 ORTHO05D004589 8.9e-217 758.1 1025 57.8
Actinidia27552 Actinidia chinensis HOM05D003722 ORTHO05D004589 4.4e-216 755.7 1028 58.7
Rhsim03G0063100 Rhododendron simsii HOM05D003722 ORTHO05D004589 2.2e-215 753.4 1031 57.7
Glyma.14G098900 Glycine max HOM05D003722 ORTHO05D004589 3.2e-214 749.6 924 63.4
TPR.G38933 Trifolium pratense HOM05D003722 ORTHO05D004589 5.4e-214 748.8 933 60.8
TAR626G0360 Trochodendron aralioides HOM05D003722 ORTHO05D004589 1.6e-213 747.3 901 63.6
TAR626G0824 Trochodendron aralioides HOM05D003722 ORTHO05D004589 3.5e-213 746.1 901 63.7
DCAR_004379 Daucus carota HOM05D003722 ORTHO05D004589 2.3e-212 743.4 973 60.2
Lsat_1_v5_gn_8_70661 Lactuca sativa HOM05D003722 ORTHO05D004589 2.3e-212 743.4 1013 56.1
Sopen08g017250 Solanum pennellii HOM05D003722 ORTHO05D004589 2.3e-212 743.4 1034 55.4
PGSC0003DMG400018806 Solanum tuberosum HOM05D003722 ORTHO05D004589 2.3e-212 743.4 917 61.9
arahy.Tifrunner.gnm1.ann1.G8USHK Arachis hypogaea HOM05D003722 ORTHO05D004589 6.6e-212 741.9 888 64.9
Solyc08g061820.3 Solanum lycopersicum HOM05D003722 ORTHO05D004589 6.6e-212 741.9 1033 55.3
Glyma.04G055700 Glycine max HOM05D003722 ORTHO05D004589 8.6e-212 741.5 923 61.8
Nn6g35614 Nelumbo nucifera HOM05D003722 ORTHO05D004589 4.3e-211 739.2 904 62.2
Sed0000287 Sechium edule HOM05D003722 ORTHO05D004589 9.5e-211 738.0 932 56.9
Eucgr.C03158 Eucalyptus grandis HOM05D003722 ORTHO05D004589 3.6e-210 736.1 1033 56.4
Nitab4.5_0002831g0060 Nicotiana tabacum HOM05D003722 ORTHO05D004589 6.2e-210 735.3 1036 54.9
Ca_13110_v3 Cicer arietinum L. HOM05D003722 ORTHO05D004589 1.1e-209 734.6 940 61.0
Phvul.001G038700 Phaseolus vulgaris HOM05D003722 ORTHO05D004589 1.1e-209 734.6 1016 57.3
HanXRQChr09g0261801 Helianthus annuus HOM05D003722 ORTHO05D004589 2.3e-209 733.4 1012 51.1
Lalb_Chr22g0356231 Lupinus albus HOM05D003722 ORTHO05D004589 6.8e-209 731.9 1070 55.5
Glyma.17G225800 Glycine max HOM05D003722 ORTHO05D004589 1.5e-208 730.7 842 66.7
Oeu036060.1 Olea europaea HOM05D003722 ORTHO05D004589 1.5e-208 730.7 886 61.4
Peaxi162Scf00486g01029 Petunia axillaris HOM05D003722 ORTHO05D004589 3.7e-207 726.1 1023 54.9
EL10Ac2g03782 Beta vulgaris HOM05D003722 ORTHO05D004589 7.1e-206 721.8 1045 54.6
Atru.chr7.1848 Acer truncatum HOM05D003722 ORTHO05D004589 9.2e-206 721.5 944 57.5
CSS0048906 Camellia sinensis var. sinensis HOM05D003722 ORTHO05D004589 1.6e-205 720.7 839 65.0
vmacro07490 Vaccinium macrocarpon HOM05D003722 ORTHO05D004589 1.9e-203 713.8 1013 56.5
CAN.G881.1 Capsicum annuum HOM05D003722 ORTHO05D004589 5.6e-203 712.2 878 60.6
MBI19_g11832_MAGBIO Magnolia biondii HOM05D003722 ORTHO05D004589 2.8e-202 709.9 904 60.3
THA.LOC104803705 Tarenaya hassleriana HOM05D003722 ORTHO05D004589 3.6e-202 709.5 1032 52.5
Aqoxy7G04082 Aquilegia oxysepala HOM05D003722 ORTHO05D004589 8.1e-202 708.4 900 60.9
PSO135G0299 Papaver somniferum HOM05D003722 ORTHO05D004589 1.2e-200 704.5 905 59.3
DCAR_001223 Daucus carota HOM05D003722 ORTHO05D004589 2.6e-200 703.4 904 61.2
Migut.E01781 Erythranthe guttata HOM05D003722 ORTHO05D004589 2.6e-200 703.4 906 59.7
Nn8g38669 Nelumbo nucifera HOM05D003722 ORTHO05D004589 7.6e-200 701.8 908 60.6
BraA03t15228Z Brassica rapa HOM05D003722 ORTHO05D004589 1.7e-199 700.7 1016 54.0
PSO724G0454 Papaver somniferum HOM05D003722 ORTHO05D004589 3.8e-199 699.5 901 58.5
Lalb_Chr08g0244821 Lupinus albus HOM05D003722 ORTHO05D004589 6.4e-199 698.7 926 58.9
AT4G33210 Arabidopsis thaliana HOM05D003722 ORTHO05D004589 1.1e-198 698.0 1018 54.6
ECA236G0039 Erigeron canadensis HOM05D003722 ORTHO05D004589 1.1e-198 698.0 923 60.0
Carub.0007s0725 Capsella rubella HOM05D003722 ORTHO05D004589 1.2e-197 694.5 1022 53.9
VMungo1309G1038 Vigna mungo HOM05D003722 ORTHO05D004589 1.0e-196 691.4 897 60.4
ATR0598G202 Amborella trichopoda HOM05D003722 ORTHO05D004589 6.6e-196 688.7 884 59.4
arahy.Tifrunner.gnm1.ann1.V7LPDI Arachis hypogaea HOM05D003722 ORTHO05D004589 1.1e-195 688.0 880 61.8
Sp7g30950 Schrenkiella parvula HOM05D003722 ORTHO05D004589 5.6e-195 685.6 1033 53.7
BcaNung02160 Brassica carinata HOM05D003722 ORTHO05D004589 7.3e-195 685.3 1017 54.1
Gohir.D06G083100 Gossypium hirsutum HOM05D003722 ORTHO05D004589 9.6e-195 684.9 983 53.6
PGR044G0665 Punica granatum HOM05D003722 ORTHO05D004589 1.6e-194 684.1 934 58.1
BolC7t46400H Brassica oleracea HOM05D003722 ORTHO05D004589 6.9e-193 678.7 1013 54.0
SalBow4G2891 Salvia bowleyana HOM05D003722 ORTHO05D004589 6.9e-193 678.7 892 61.7
HanXRQChr05g0135941 Helianthus annuus HOM05D003722 ORTHO05D004589 9.0e-193 678.3 1016 52.5
Lj7A221G29 Lonicera japonica HOM05D003722 ORTHO05D004589 1.2e-192 677.9 915 55.2
HanXRQChr03g0065591 Helianthus annuus HOM05D003722 ORTHO05D004589 1.9e-190 670.6 1025 55.5
AUR62009080 Chenopodium quinoa HOM05D003722 ORTHO05D004589 3.2e-190 669.8 923 56.9
SGA_v2.0_scaffold64G21877 Striga asiatica HOM05D003722 ORTHO05D004589 7.1e-190 668.7 911 60.3
Hund19422 Selenicereus undatus HOM05D003722 ORTHO05D004589 6.0e-189 665.6 957 54.4
Migut.A00079 Erythranthe guttata HOM05D003722 ORTHO05D004589 7.9e-189 665.2 901 59.0
C01p05420 Brassica napus HOM05D003722 ORTHO05D004589 1.7e-188 664.1 959 54.8
A01p04970 Brassica napus HOM05D003722 ORTHO05D004589 3.9e-188 662.9 929 56.1
MSTRG.25985 Avicennia marina HOM05D003722 ORTHO05D004589 5.1e-188 662.5 909 58.0
BolC1t00522H Brassica oleracea HOM05D003722 ORTHO05D004589 8.7e-188 661.8 964 54.6
BraA01t00479Z Brassica rapa HOM05D003722 ORTHO05D004589 2.5e-187 660.2 929 56.0
CARHR241240 Cardamine hirsuta HOM05D003722 ORTHO05D004589 4.3e-187 659.4 1025 52.7
Aa31sc290G30 Aethionema arabicum HOM05D003722 ORTHO05D004589 7.3e-187 658.7 1034 51.8
CiPaw.16G068500 Carya illinoinensis HOM05D003722 ORTHO05D004589 7.3e-187 658.7 856 58.5
Thhalv10024312m.g Eutrema salsugineum HOM05D003722 ORTHO05D004589 1.4e-185 654.4 1023 52.6
AUR62020586 Chenopodium quinoa HOM05D003722 ORTHO05D004589 2.0e-184 650.6 908 57.5
arahy.Tifrunner.gnm1.ann1.V9GZ7C Arachis hypogaea HOM05D003722 ORTHO05D004589 7.6e-184 648.7 884 59.7
BraA08t33724Z Brassica rapa HOM05D003722 ORTHO05D004589 7.6e-184 648.7 912 55.5
AL7G18350 Arabidopsis lyrata HOM05D003722 ORTHO05D004589 4.9e-183 646.0 1018 52.8
BcaC09g52132 Brassica carinata HOM05D003722 ORTHO05D004589 7.1e-182 642.1 1034 51.4
Gorai.010G096600 Gossypium raimondii HOM05D003722 ORTHO05D004589 1.3e-178 631.3 954 47.0
SGA_v2.0_scaffold169G38713 Striga asiatica HOM05D003722 ORTHO05D004589 3.7e-178 629.8 830 61.1
C03p86790 Brassica napus HOM05D003722 ORTHO05D004589 1.3e-175 621.3 901 51.7
TWI39G1239 Tripterygium wilfordii HOM05D003722 ORTHO05D004589 3.8e-175 619.8 752 61.6
Psat6g022880 Pisum sativum HOM05D003722 ORTHO05D004589 3.5e-173 613.2 1030 51.1
BcaC01g01002 Brassica carinata HOM05D003722 ORTHO05D004589 5.7e-171 605.9 901 50.6
BolC3t20973H Brassica oleracea HOM05D003722 ORTHO05D004589 5.7e-171 605.9 901 50.6
Medtr1g015480 Medicago truncatula HOM05D003722 ORTHO05D004589 1.3e-170 604.7 804 56.6
SGA_v2.0_scaffold163G37999 Striga asiatica HOM05D003722 ORTHO05D004589 4.8e-170 602.8 830 57.1
BolC3t20974H Brassica oleracea HOM05D003722 ORTHO05D004589 3.8e-167 593.2 926 51.3
BcaB03g12811 Brassica carinata HOM05D003722 ORTHO05D004589 4.2e-166 589.7 905 50.1
A08p17750 Brassica napus HOM05D003722 ORTHO05D004589 4.2e-166 589.7 916 52.2
BraA08t33725Z Brassica rapa HOM05D003722 ORTHO05D004589 9.3e-166 588.6 916 52.4
SEGI_30451 Sequoiadendron giganteum HOM05D003722 ORTHO05D004589 3.0e-164 583.6 908 52.8
Cpa.g.sc126.25 Carica papaya HOM05D003722 ORTHO05D004589 1.8e-161 574.3 696 66.2
C03p86800 Brassica napus HOM05D003722 ORTHO05D004589 4.6e-157 559.7 926 50.1
unitig_748.g8237 Utricularia gibba HOM05D003722 ORTHO05D004589 2.5e-155 553.9 826 57.4
A08p17740 Brassica napus HOM05D003722 ORTHO05D004589 6.9e-153 545.8 901 48.3
Gohir.A06G081600 Gossypium hirsutum HOM05D003722 ORTHO05D004589 1.4e-150 538.1 697 57.7
HPP92_006154 Vanilla planifolia HOM05D003722 ORTHO05D004589 3.6e-149 533.5 819 55.2
SEGI_01273 Sequoiadendron giganteum HOM05D003722 ORTHO05D004589 1.4e-148 531.6 899 52.5
Pp3c12_17410 Physcomitrium patens HOM05D003722 ORTHO05D004589 1.0e-143 515.4 926 48.2
Mapoly0202s0013 Marchantia polymorpha HOM05D003722 ORTHO05D004589 7.5e-139 499.2 996 45.3
unitig_4.g30332 Utricularia gibba HOM05D003722 ORTHO05D004589 3.0e-132 477.2 803 50.7
Pp3c6_6070 Physcomitrium patens HOM05D003722 ORTHO05D004589 2.8e-130 470.7 999 45.1
Oeu022303.1 Olea europaea HOM05D003722 ORTHO05D004589 4.8e-130 469.9 907 39.4
Actinidia25690 Actinidia chinensis HOM05D003722 ORTHO05D004589 1.1e-129 468.8 663 63.3
CDE07G1686 Ceratophyllum demersum HOM05D003722 ORTHO05D004589 1.8e-129 468.0 739 49.5
Pp3c5_23900 Physcomitrium patens HOM05D003722 ORTHO05D004589 1.8e-129 468.0 942 43.6
MBI13_g31962_MAGBIO Magnolia biondii HOM05D003722 ORTHO05D004589 1.2e-123 448.7 684 49.4
SMO238G0031 Selaginella moellendorffii HOM05D003722 ORTHO05D004589 2.2e-122 444.5 811 45.0
SHI18847 Sapria himalayana HOM05D000105 ORTHO05D000023 2.0e-120 438.0 1306 33.0
Pp3c4_12360 Physcomitrium patens HOM05D003722 ORTHO05D004589 5.2e-116 423.3 933 44.8
Cc08_g01170 Coffea canephora HOM05D003722 ORTHO05D004589 2.7e-104 384.4 409 64.3
MBI13_g13882_MAGBIO Magnolia biondii HOM05D003722 ORTHO05D004589 6.6e-103 379.8 395 64.3
Zm00001eb048660 Zea mays HOM05D003722 ORTHO05D004589 3.4e-99 367.5 457 54.7
SalBow1G2799 Salvia bowleyana HOM05D003722 ORTHO05D004589 9.8e-99 365.9 656 56.9
Sc09g0010110 Simmondsia chinensis HOM05D003722 ORTHO05D004589 4.0e-92 344.0 756 39.4
CBR_g11995 Chara braunii HOM05D003722 ORTHO05D004589 5.2e-92 343.6 973 37.0
Zm00001eb223490 Zea mays HOM05D003722 ORTHO05D004589 1.5e-91 342.0 479 52.2
Os10g0396400 Oryza sativa ssp. japonica HOM05D003722 ORTHO05D004589 2.0e-91 341.7 661 49.0
AagrBONN_evm.TU.Sc2ySwM_117.2463 Anthoceros agrestis HOM05D003722 ORTHO05D004589 6.9e-84 316.6 676 46.7
Psat3g079480 Pisum sativum HOM05D003722 ORTHO05D004589 6.9e-76 290.0 186 78.5
Cc08_g01160 Coffea canephora HOM05D003722 ORTHO05D004589 4.5e-67 260.8 271 64.6
Oeu028128.1 Olea europaea HOM05D003722 ORTHO05D004589 3.9e-63 247.7 298 77.2
Ah.11g044300 Amaranthus hybridus HOM05D003722 ORTHO05D004589 5.7e-54 217.2 229 51.1
Gohir.A06G081780 Gossypium hirsutum HOM05D003722 ORTHO05D004589 1.2e-51 209.5 285 45.3
Actinidia25691 Actinidia chinensis HOM05D003722 ORTHO05D004589 3.9e-47 194.5 331 40.8
Cpa.g.sc126.26 Carica papaya HOM05D003722 ORTHO05D004589 9.1e-36 156.8 124 67.7
Psat5g213240 Pisum sativum HOM05D003722 ORTHO05D004589 9.7e-30 136.7 91 75.8
VMungo0720G2633 Vigna mungo HOM05D003722 ORTHO05D004589 9.1e-28 130.2 88 75.0
VMungo0251G0605 Vigna mungo HOM05D003722 ORTHO05D001926 1.3e-26 126.3 119 58.8
ECA236G4568 Erigeron canadensis HOM05D000007 ORTHO05D000039 5.7e-22 110.9 146 47.3
SalBow1G8614 Salvia bowleyana HOM05D003722 ORTHO05D050768 2.0e-14 85.9 136 74.3
Psat5g114640 Pisum sativum HOM05D003722 ORTHO05D004589 2.8e-13 82.0 192 34.9
Mapoly0101s0054 Marchantia polymorpha HOM05D003722 ORTHO05D004589 3.1e-12 78.6 62 58.1
Cre12.g525600 Chlamydomonas reinhardtii HOM05D003722 ORTHO05D004589 3.6e-08 65.1 383 22.5
CAN.G397.14 Capsicum annuum HOM05D068202 ORTHO05D115534 1.4e-07 63.2 55 60.0
Sc09g0009810 Simmondsia chinensis HOM05D003722 ORTHO05D004589 9.8e-06 57.0 165 28.5


User provided reference genes

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