Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN27G2465 Fragaria x ananassa HOM05D004816 ORTHO05D006043 2.0e-222 775.8 488 100.0
FAN15G1865 Fragaria x ananassa HOM05D004816 ORTHO05D006043 1.2e-211 740.0 494 95.7
FvH4_2g07090 Fragaria vesca HOM05D004816 ORTHO05D006043 2.3e-202 709.1 505 91.1
FAN24G2332 Fragaria x ananassa HOM05D004816 ORTHO05D006043 7.6e-190 667.5 478 90.2
MD10G1088000 Malus domestica HOM05D004816 ORTHO05D006043 4.6e-171 605.1 409 81.2
MD05G1073700 Malus domestica HOM05D004816 ORTHO05D006043 1.1e-164 583.9 411 78.1
CiPaw.06G139500 Carya illinoinensis HOM05D004816 ORTHO05D006043 4.5e-158 562.0 410 74.1
Cfa004941 Carpinus fangiana HOM05D004816 ORTHO05D006043 5.0e-157 558.5 412 73.5
QL11p039002 Quercus lobata HOM05D004816 ORTHO05D006043 6.1e-155 551.6 411 71.8
QL11p040287 Quercus lobata HOM05D004816 ORTHO05D006043 1.0e-154 550.8 411 71.8
Dinv23600 Davidia involucrata HOM05D004816 ORTHO05D006043 2.3e-154 549.7 414 72.5
COL.COLO4_11733 Corchorus olitorius HOM05D004816 ORTHO05D006043 4.8e-152 542.0 409 71.6
GSVIVG01031842001 Vitis vinifera HOM05D004816 ORTHO05D006043 1.4e-151 540.4 412 72.1
Thecc.02G094000 Theobroma cacao HOM05D004816 ORTHO05D006043 4.1e-151 538.9 404 72.0
Duzib132G0866 Durio zibethinus HOM05D004816 ORTHO05D006043 7.0e-151 538.1 401 72.8
Duzib248G0025 Durio zibethinus HOM05D004816 ORTHO05D006043 3.5e-150 535.8 412 71.1
CANSAT25G1860 Cannabis sativa HOM05D004816 ORTHO05D006043 7.7e-150 534.6 409 72.1
Manes.17G095600 Manihot esculenta HOM05D004816 ORTHO05D006043 3.8e-149 532.3 413 71.4
Atru.chr5.2842 Acer truncatum HOM05D004816 ORTHO05D006043 6.5e-149 531.6 416 71.4
Potri.009G107800 Populus trichocarpa HOM05D004816 ORTHO05D006043 8.5e-149 531.2 413 71.2
Actinidia27933 Actinidia chinensis HOM05D004816 ORTHO05D006043 1.1e-148 530.8 413 69.7
CSS0036891 Camellia sinensis var. sinensis HOM05D004816 ORTHO05D006043 8.0e-147 524.6 413 70.2
Sabra09G0082300 Salix brachista HOM05D004816 ORTHO05D006043 1.4e-146 523.9 400 72.8
Actinidia17843 Actinidia chinensis HOM05D004816 ORTHO05D006043 5.2e-146 521.9 413 68.8
Haze_02469 Corylus avellana HOM05D004816 ORTHO05D006043 6.7e-146 521.5 469 63.8
Gohir.D12G026300 Gossypium hirsutum HOM05D004816 ORTHO05D006043 6.7e-146 521.5 401 71.3
Gorai.008G026600 Gossypium raimondii HOM05D004816 ORTHO05D006043 1.1e-145 520.8 401 71.3
Ciclev10028431m.g Citrus clementina HOM05D004816 ORTHO05D006043 3.1e-143 512.7 405 69.4
Gohir.A12G026800 Gossypium hirsutum HOM05D004816 ORTHO05D006043 5.3e-143 511.9 399 70.4
TWI31G1354 Tripterygium wilfordii HOM05D004816 ORTHO05D006043 7.7e-142 508.1 406 68.7
Eucgr.I01207 Eucalyptus grandis HOM05D004816 ORTHO05D006043 6.5e-141 505.0 411 66.4
Rhsim05G0079600 Rhododendron simsii HOM05D004816 ORTHO05D006043 8.5e-141 504.6 439 64.0
Nn6g32127 Nelumbo nucifera HOM05D004816 ORTHO05D006043 1.5e-140 503.8 413 67.1
vmacro19471 Vaccinium macrocarpon HOM05D004816 ORTHO05D006043 1.2e-139 500.7 415 67.7
TAR625G0829 Trochodendron aralioides HOM05D004816 ORTHO05D006043 1.6e-139 500.4 414 67.1
Lj5A205G67 Lonicera japonica HOM05D004816 ORTHO05D006043 1.8e-138 496.9 427 65.1
Nitab4.5_0009440g0020 Nicotiana tabacum HOM05D004816 ORTHO05D006043 5.7e-137 491.9 417 64.7
PSO675G8525 Papaver somniferum HOM05D004816 ORTHO05D006043 1.3e-136 490.7 410 65.4
Nitab4.5_0013034g0040 Nicotiana tabacum HOM05D004816 ORTHO05D006043 1.7e-136 490.3 413 64.4
Ca_12466_v3 Cicer arietinum L. HOM05D004816 ORTHO05D006043 2.2e-136 490.0 408 66.4
Nitab4.5_0001401g0100 Nicotiana tabacum HOM05D004816 ORTHO05D006043 1.4e-135 487.3 413 63.9
PSO541G0848 Papaver somniferum HOM05D004816 ORTHO05D006043 3.1e-135 486.1 410 65.6
PGSC0003DMG402025925 Solanum tuberosum HOM05D004816 ORTHO05D006043 3.1e-135 486.1 413 63.4
Lalb_Chr10g0095411 Lupinus albus HOM05D004816 ORTHO05D006043 5.4e-135 485.3 409 66.5
Haze_02467 Corylus avellana HOM05D004816 ORTHO05D006043 1.6e-134 483.8 427 64.4
Peaxi162Scf00003g02043 Petunia axillaris HOM05D004816 ORTHO05D006043 1.3e-133 480.7 401 64.8
Sopen01g051090 Solanum pennellii HOM05D004816 ORTHO05D006043 2.2e-133 479.9 413 63.0
PGR142G0866 Punica granatum HOM05D004816 ORTHO05D006043 3.8e-133 479.2 411 63.5
arahy.Tifrunner.gnm1.ann1.D5RGK8 Arachis hypogaea HOM05D004816 ORTHO05D006043 5.0e-133 478.8 436 62.2
ClCG02G005580 Citrullus lanatus HOM05D004816 ORTHO05D006043 5.0e-133 478.8 412 65.8
MBI16_g31473_MAGBIO Magnolia biondii HOM05D004816 ORTHO05D006043 5.0e-133 478.8 420 65.2
Medtr1g034170 Medicago truncatula HOM05D004816 ORTHO05D006043 1.9e-132 476.9 410 65.6
Glyma.20G009200 Glycine max HOM05D004816 ORTHO05D006043 3.2e-132 476.1 410 63.7
Glyma.07G180000 Glycine max HOM05D004816 ORTHO05D006043 4.2e-132 475.7 408 64.2
arahy.Tifrunner.gnm1.ann1.WD2X18 Arachis hypogaea HOM05D004816 ORTHO05D006043 7.2e-132 474.9 436 61.7
Solyc01g108890.3 Solanum lycopersicum HOM05D004816 ORTHO05D006043 7.2e-132 474.9 413 62.0
PGSC0003DMG400006219 Solanum tuberosum HOM05D004816 ORTHO05D006043 1.6e-131 473.8 412 62.6
Aqoxy6G00919 Aquilegia oxysepala HOM05D004816 ORTHO05D006043 3.6e-131 472.6 409 65.0
TPR.G18619 Trifolium pratense HOM05D004816 ORTHO05D006043 8.0e-131 471.5 409 65.0
MELO3C018421.2 Cucumis melo HOM05D004816 ORTHO05D006043 1.4e-130 470.7 415 63.9
SalBow6G5269 Salvia bowleyana HOM05D004816 ORTHO05D006043 1.2e-129 467.6 413 63.0
Psat6g096400 Pisum sativum HOM05D004816 ORTHO05D006043 3.4e-129 466.1 409 64.1
Phvul.003G011700 Phaseolus vulgaris HOM05D004816 ORTHO05D006043 5.7e-129 465.3 411 62.8
DCAR_022069 Daucus carota HOM05D004816 ORTHO05D006043 2.8e-128 463.0 410 64.9
CsaV3_7G010070 Cucumis sativus L. HOM05D004816 ORTHO05D006043 3.7e-128 462.6 417 63.8
VMungo1215G1045 Vigna mungo HOM05D004816 ORTHO05D006043 8.3e-128 461.5 411 61.6
AUR62011413 Chenopodium quinoa HOM05D004816 ORTHO05D006043 3.1e-127 459.5 410 62.7
Sed0008645 Sechium edule HOM05D004816 ORTHO05D006043 4.1e-127 459.1 415 62.2
Migut.B00299 Erythranthe guttata HOM05D004816 ORTHO05D006043 1.2e-126 457.6 407 61.9
Cc02_g18320 Coffea canephora HOM05D004816 ORTHO05D006043 3.5e-126 456.1 376 66.2
AL3G47650 Arabidopsis lyrata HOM05D004816 ORTHO05D006043 2.9e-125 453.0 410 62.7
AT2G15860 Arabidopsis thaliana HOM05D004816 ORTHO05D006043 2.9e-125 453.0 410 62.9
BcaC01g03051 Brassica carinata HOM05D004816 ORTHO05D006043 2.9e-125 453.0 411 62.3
C03p56660 Brassica napus HOM05D004816 ORTHO05D006043 2.9e-125 453.0 411 62.3
AUR62016646 Chenopodium quinoa HOM05D004816 ORTHO05D006043 2.9e-125 453.0 408 62.5
A03p45610 Brassica napus HOM05D004816 ORTHO05D006043 3.8e-125 452.6 421 60.8
MSTRG.20129 Avicennia marina HOM05D004816 ORTHO05D006043 5.0e-125 452.2 413 61.0
CAN.G322.72 Capsicum annuum HOM05D004816 ORTHO05D006043 8.6e-125 451.4 371 65.0
EL10Ac9g21805 Beta vulgaris HOM05D004816 ORTHO05D006043 1.9e-124 450.3 400 63.8
BcaB08g34612 Brassica carinata HOM05D004816 ORTHO05D006043 2.5e-124 449.9 411 61.3
BraA03t13693Z Brassica rapa HOM05D004816 ORTHO05D006043 7.3e-124 448.4 425 60.2
Sp3g29160 Schrenkiella parvula HOM05D004816 ORTHO05D006043 2.8e-123 446.4 411 60.6
Aa31LG8G13390 Aethionema arabicum HOM05D004816 ORTHO05D006043 3.6e-123 446.0 402 61.7
CARHR106200 Cardamine hirsuta HOM05D004816 ORTHO05D006043 4.7e-123 445.7 410 60.2
BolC3t17950H Brassica oleracea HOM05D004816 ORTHO05D006043 6.1e-123 445.3 431 59.4
Hund06195 Selenicereus undatus HOM05D004816 ORTHO05D006043 6.1e-123 445.3 409 62.3
SGA_v2.0_scaffold58G20600 Striga asiatica HOM05D004816 ORTHO05D006043 3.0e-122 443.0 413 60.8
Carub.0003s2975 Capsella rubella HOM05D004816 ORTHO05D006043 6.8e-122 441.8 411 61.8
Thhalv10022638m.g Eutrema salsugineum HOM05D004816 ORTHO05D006043 6.8e-122 441.8 434 58.1
ATR0733G051 Amborella trichopoda HOM05D004816 ORTHO05D006043 2.6e-121 439.9 410 59.0
THA.LOC104807346 Tarenaya hassleriana HOM05D004816 ORTHO05D006043 4.4e-121 439.1 418 61.7
Prupe.8G114000 Prunus persica HOM05D004816 ORTHO05D006043 7.5e-121 438.3 412 64.1
ECA234G4099 Erigeron canadensis HOM05D004816 ORTHO05D006043 1.1e-119 434.5 404 61.9
Zm00001eb056520 Zea mays HOM05D004816 ORTHO05D006043 2.4e-119 433.3 411 59.1
BcaB03g16336 Brassica carinata HOM05D004816 ORTHO05D006043 3.2e-119 433.0 410 60.0
BraA07t28285Z Brassica rapa HOM05D004816 ORTHO05D006043 7.0e-119 431.8 427 58.1
HanXRQChr10g0303411 Helianthus annuus HOM05D004816 ORTHO05D006043 9.2e-119 431.4 413 59.6
THA.LOC104819592 Tarenaya hassleriana HOM05D004816 ORTHO05D006043 1.2e-118 431.0 408 61.0
BcaC06g36093 Brassica carinata HOM05D004816 ORTHO05D006043 3.0e-117 426.4 411 58.6
MSTRG.16772 Avicennia marina HOM05D004816 ORTHO05D006043 5.0e-117 425.6 413 57.6
C07p07890 Brassica napus HOM05D004816 ORTHO05D006043 6.6e-117 425.2 421 57.5
BolC7t41207H Brassica oleracea HOM05D004816 ORTHO05D006043 6.6e-117 425.2 421 57.5
Os03g0737900 Oryza sativa ssp. japonica HOM05D004816 ORTHO05D006043 1.1e-116 424.5 409 58.9
A07p04930 Brassica napus HOM05D004816 ORTHO05D006043 1.9e-116 423.7 374 62.3
Lsat_1_v5_gn_5_117600 Lactuca sativa HOM05D004816 ORTHO05D006043 7.3e-116 421.8 395 59.7
HPP92_019907 Vanilla planifolia HOM05D004816 ORTHO05D006043 1.8e-114 417.2 404 57.9
Lj2g0017153 Lotus japonicus HOM05D004816 ORTHO05D001172 7.8e-110 401.7 360 64.7
CDE06G1012 Ceratophyllum demersum HOM05D004816 ORTHO05D006043 5.2e-106 389.0 375 56.8
QL06p000730 Quercus lobata HOM05D004816 ORTHO05D006043 1.2e-105 387.9 356 61.5
TAR381G0713 Trochodendron aralioides HOM05D004816 ORTHO05D006043 1.7e-96 357.5 289 67.5
unitig_21.g20758 Utricularia gibba HOM05D004816 ORTHO05D006043 2.8e-91 340.1 426 47.9
RcHm_v2.0_Chr6g0259581 Rosa chinensis HOM05D004816 ORTHO05D006043 2.4e-90 337.0 211 84.4
CDE04G3783 Ceratophyllum demersum HOM05D004816 ORTHO05D006043 1.2e-89 334.7 310 57.7
QL08p015136 Quercus lobata HOM05D004816 ORTHO05D000106 1.7e-88 330.9 277 65.7
QL08p015067 Quercus lobata HOM05D004816 ORTHO05D000106 4.9e-88 329.3 277 65.3
Cpa.g.sc62.70 Carica papaya HOM05D004816 ORTHO05D006043 1.1e-87 328.2 261 69.0
RcHm_v2.0_Chr6g0259571 Rosa chinensis HOM05D004816 ORTHO05D006043 5.3e-82 309.3 176 94.9
Mapoly0087s0083 Marchantia polymorpha HOM05D004816 ORTHO05D006043 2.6e-81 307.0 417 44.4
SEGI_09196 Sequoiadendron giganteum HOM05D004816 ORTHO05D006043 3.8e-80 303.1 291 56.0
Sc08g0000210 Simmondsia chinensis HOM05D004816 ORTHO05D006043 4.6e-78 296.2 233 67.4
Pp3c4_2830 Physcomitrium patens HOM05D004816 ORTHO05D006043 6.7e-77 292.4 416 41.1
SMO347G0163 Selaginella moellendorffii HOM05D004816 ORTHO05D006043 2.7e-70 270.4 409 40.6
Nitab4.5_0005466g0040 Nicotiana tabacum HOM05D004816 ORTHO05D006043 4.9e-64 249.6 256 56.6
Oeu021929.4 Olea europaea HOM05D004816 ORTHO05D006043 9.3e-63 245.4 301 50.8
SHI18146 Sapria himalayana HOM05D004816 ORTHO05D006043 5.1e-61 239.6 509 36.7
AagrBONN_evm.TU.Sc2ySwM_228.2260 Anthoceros agrestis HOM05D004816 ORTHO05D006043 6.7e-61 239.2 410 39.3
CSS0007305 Camellia sinensis var. sinensis HOM05D004816 ORTHO05D006043 6.3e-59 232.6 263 54.0
CSS0019035 Camellia sinensis var. sinensis HOM05D004816 ORTHO05D006043 3.4e-49 200.3 254 52.0
Dinv42115 Davidia involucrata HOM05D004816 ORTHO05D000337 3.2e-47 193.7 140 75.0
Nitab4.5_0000876g0230 Nicotiana tabacum HOM05D000224 ORTHO05D000337 1.4e-42 178.3 157 63.1
Cpa.g.sc62.69 Carica papaya HOM05D004816 ORTHO05D006043 9.1e-42 175.6 144 67.4
Sc08g0000220 Simmondsia chinensis HOM05D004816 ORTHO05D006043 4.4e-36 156.8 147 56.5
TWI79G0508 Tripterygium wilfordii HOM05D004816 ORTHO05D006043 7.0e-34 149.4 109 74.3
Atru.chr13.510 Acer truncatum HOM05D004816 ORTHO05D006043 4.0e-29 133.7 105 71.4
Atru.chr8.2607 Acer truncatum HOM05D004816 ORTHO05D006043 4.0e-29 133.7 105 71.4
Manes.15G144501 Manihot esculenta HOM05D004816 ORTHO05D006043 2.6e-28 131.0 119 64.7
Gohir.A01G005566 Gossypium hirsutum HOM05D004816 ORTHO05D006043 5.3e-26 123.2 126 57.9
Lsat_1_v5_gn_4_111080 Lactuca sativa HOM05D004816 ORTHO05D006043 2.7e-22 110.9 153 45.8
Lsat_1_v5_gn_4_68061 Lactuca sativa HOM05D004816 ORTHO05D006043 2.0e-17 94.7 123 50.4
Duzib052G0890 Durio zibethinus HOM05D004816 ORTHO05D006043 5.9e-17 93.2 70 77.1
Psat0s2233g0240 Pisum sativum HOM05D004816 ORTHO05D006043 1.7e-16 91.7 106 48.1
Actinidia00469 Actinidia chinensis HOM05D004816 ORTHO05D006043 1.9e-15 88.2 75 69.3
Atru.chr8.2606 Acer truncatum HOM05D004816 ORTHO05D006043 4.7e-14 83.6 56 73.2
CSS0032400 Camellia sinensis var. sinensis HOM05D001016 ORTHO05D016153 1.4e-13 82.0 154 40.9
DCAR_015855 Daucus carota HOM05D004816 ORTHO05D006043 3.0e-13 80.9 95 53.7
Oeu057669.2 Olea europaea HOM05D004816 ORTHO05D006043 1.8e-10 71.6 81 54.3
Sopen01g051070 Solanum pennellii HOM05D004816 ORTHO05D006043 7.0e-10 69.7 87 44.8
CSS0045496 Camellia sinensis var. sinensis HOM05D001016 ORTHO05D016153 3.5e-09 67.4 170 34.7
CSS0009254 Camellia sinensis var. sinensis HOM05D001016 ORTHO05D016153 2.9e-08 64.3 165 33.3
CSS0049387 Camellia sinensis var. sinensis HOM05D001016 ORTHO05D016153 4.3e-07 60.5 162 31.5
arahy.Tifrunner.gnm1.ann1.MV8GC5 Arachis hypogaea HOM05D004816 ORTHO05D006043 1.6e-06 58.5 74 45.9


User provided reference genes

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