Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN27G2449 Fragaria x ananassa HOM05D003500 ORTHO05D003919 7.1e-126 454.1 262 100.0
FvH4_2g36330 Fragaria vesca HOM05D003500 ORTHO05D003919 3.5e-125 451.8 262 98.9
FAN20G2191 Fragaria x ananassa HOM05D003500 ORTHO05D003919 9.9e-120 433.7 262 91.6
RcHm_v2.0_Chr6g0305551 Rosa chinensis HOM05D003500 ORTHO05D003919 5.3e-89 331.6 262 74.0
Prupe.1G454700 Prunus persica HOM05D003500 ORTHO05D003919 5.4e-49 198.7 272 52.6
MD15G1099900 Malus domestica HOM05D003500 ORTHO05D003919 3.2e-41 172.9 297 46.8
CiPaw.07G208500 Carya illinoinensis HOM05D003500 ORTHO05D003919 1.2e-37 161.0 292 41.8
QL12p026085 Quercus lobata HOM05D003500 ORTHO05D003919 4.0e-36 156.0 283 41.3
Actinidia15719 Actinidia chinensis HOM05D003500 ORTHO05D003919 8.9e-36 154.8 280 42.9
Actinidia14650 Actinidia chinensis HOM05D003500 ORTHO05D003919 2.2e-34 150.2 291 42.3
Haze_21819 Corylus avellana HOM05D003500 ORTHO05D003919 8.3e-34 148.3 296 39.9
CsaV3_2G031120 Cucumis sativus L. HOM05D003500 ORTHO05D003919 1.2e-32 144.4 290 40.7
Cfa013328 Carpinus fangiana HOM05D003500 ORTHO05D003919 1.6e-32 144.1 308 39.3
MELO3C011162.2 Cucumis melo HOM05D003500 ORTHO05D003919 1.6e-32 144.1 290 40.0
Rhsim07G0154900 Rhododendron simsii HOM05D003500 ORTHO05D003919 3.5e-32 142.9 288 40.6
ClCG08G012430 Citrullus lanatus HOM05D003500 ORTHO05D003919 3.9e-31 139.4 290 39.0
CSS0048332 Camellia sinensis var. sinensis HOM05D003500 ORTHO05D003919 6.6e-31 138.7 289 38.4
Sabra18G0036300 Salix brachista HOM05D003500 ORTHO05D003919 1.1e-30 137.9 275 38.2
Thecc.09G037900 Theobroma cacao HOM05D003500 ORTHO05D003919 2.5e-30 136.7 288 39.2
Potri.018G035800 Populus trichocarpa HOM05D003500 ORTHO05D003919 4.3e-30 136.0 275 37.8
Gorai.001G029300 Gossypium raimondii HOM05D003500 ORTHO05D003919 7.3e-30 135.2 263 37.3
Eucgr.C02880 Eucalyptus grandis HOM05D003500 ORTHO05D003919 9.5e-30 134.8 284 38.0
TAR624G1157 Trochodendron aralioides HOM05D003500 ORTHO05D003919 9.5e-30 134.8 294 36.4
Lalb_Chr03g0029341 Lupinus albus HOM05D003500 ORTHO05D003919 3.6e-29 132.9 273 40.7
Dinv14210 Davidia involucrata HOM05D003500 ORTHO05D003919 8.1e-29 131.7 289 38.8
Gohir.A07G024400 Gossypium hirsutum HOM05D003500 ORTHO05D003919 1.1e-28 131.3 285 36.1
Ciclev10009124m.g Citrus clementina HOM05D003500 ORTHO05D003919 1.4e-28 131.0 285 37.5
Gohir.D07G028000 Gossypium hirsutum HOM05D003500 ORTHO05D003919 1.4e-28 131.0 290 35.5
arahy.Tifrunner.gnm1.ann1.V41S3G Arachis hypogaea HOM05D003500 ORTHO05D003919 4.0e-28 129.4 277 39.7
Atru.chr7.2303 Acer truncatum HOM05D003500 ORTHO05D003919 1.2e-27 127.9 327 36.4
Hma1.2p1_0140F.1_g063720 Hydrangea macrophylla HOM05D003500 ORTHO05D003919 2.6e-27 126.7 295 38.0
Lj8A606T22 Lonicera japonica HOM05D003500 ORTHO05D003919 7.6e-27 125.2 279 36.9
CANSAT35G1218 Cannabis sativa HOM05D003500 ORTHO05D003919 2.4e-25 120.2 293 35.8
Duzib187G1538 Durio zibethinus HOM05D003500 ORTHO05D003919 2.4e-25 120.2 284 36.6
Ca_26668_v3 Cicer arietinum L. HOM05D003500 ORTHO05D003919 3.2e-25 119.8 265 37.7
Duzib168G0612 Durio zibethinus HOM05D003500 ORTHO05D003919 3.2e-25 119.8 296 35.5
VMungo1127G1234 Vigna mungo HOM05D003500 ORTHO05D003919 4.1e-25 119.4 265 37.0
Glyma.12G113900 Glycine max HOM05D003500 ORTHO05D003919 5.4e-25 119.0 262 38.2
Phvul.011G117800 Phaseolus vulgaris HOM05D003500 ORTHO05D003919 9.2e-25 118.2 258 37.2
Manes.16G069800 Manihot esculenta HOM05D003500 ORTHO05D003919 1.2e-24 117.9 281 37.4
Sc09g0008940 Simmondsia chinensis HOM05D003500 ORTHO05D003919 1.6e-24 117.5 281 34.2
TPR.G21779 Trifolium pratense HOM05D003500 ORTHO05D003919 2.7e-24 116.7 262 38.5
arahy.Tifrunner.gnm1.ann1.HR3BJH Arachis hypogaea HOM05D003500 ORTHO05D003919 4.6e-24 115.9 273 38.1
TPR.G31013 Trifolium pratense HOM05D003500 ORTHO05D003919 1.3e-23 114.4 267 36.7
Cfa002069 Carpinus fangiana HOM05D003500 ORTHO05D003919 1.7e-23 114.0 261 34.1
Dinv30238 Davidia involucrata HOM05D003500 ORTHO05D003919 3.0e-23 113.2 179 44.1
SGA_v2.0_scaffold169G38640 Striga asiatica HOM05D003500 ORTHO05D003919 3.0e-23 113.2 268 34.7
GSVIVG01035753001 Vitis vinifera HOM05D003500 ORTHO05D003919 3.9e-23 112.8 301 36.2
Psat7g063400 Pisum sativum HOM05D003500 ORTHO05D003919 5.1e-23 112.5 273 37.4
Migut.E01507 Erythranthe guttata HOM05D003500 ORTHO05D003919 8.6e-23 111.7 261 35.6
TWI32G0121 Tripterygium wilfordii HOM05D003500 ORTHO05D003919 8.6e-23 111.7 285 35.1
Haze_16428 Corylus avellana HOM05D003500 ORTHO05D003919 1.5e-22 110.9 287 31.4
HanXRQChr01g0029371 Helianthus annuus HOM05D003500 ORTHO05D003919 1.5e-22 110.9 273 34.1
Medtr6g007370 Medicago truncatula HOM05D003500 ORTHO05D003919 1.5e-22 110.9 263 37.3
Medtr7g446310 Medicago truncatula HOM05D003500 ORTHO05D003919 1.5e-22 110.9 263 37.3
PGR044G1892 Punica granatum HOM05D003500 ORTHO05D003919 1.9e-22 110.5 280 35.7
AUR62024822 Chenopodium quinoa HOM05D003500 ORTHO05D003919 9.6e-22 108.2 288 37.5
PGR102G2146 Punica granatum HOM05D003500 ORTHO05D003919 9.6e-22 108.2 271 36.2
vmacro05351 Vaccinium macrocarpon HOM05D003500 ORTHO05D003919 2.8e-21 106.7 269 36.4
Solyc08g068060.3 Solanum lycopersicum HOM05D003500 ORTHO05D003919 6.2e-21 105.5 286 34.6
AUR62032393 Chenopodium quinoa HOM05D003500 ORTHO05D003919 1.1e-20 104.8 276 36.6
Sopen08g021950 Solanum pennellii HOM05D003500 ORTHO05D003919 1.1e-20 104.8 291 34.0
DCAR_003060 Daucus carota HOM05D003500 ORTHO05D003919 1.8e-20 104.0 275 36.4
Lj3g0003659 Lotus japonicus HOM05D003500 ORTHO05D003919 1.2e-19 101.3 284 34.2
Nitab4.5_0002393g0050 Nicotiana tabacum HOM05D003500 ORTHO05D003919 1.2e-19 101.3 289 32.2
Aa31LG2G16940 Aethionema arabicum HOM05D003500 ORTHO05D003919 2.0e-19 100.5 279 31.9
EL10Ac2g02525 Beta vulgaris HOM05D003500 ORTHO05D003919 2.6e-19 100.1 273 37.4
TAR636G0685 Trochodendron aralioides HOM05D003500 ORTHO05D003919 7.6e-19 98.6 274 35.4
BcaB03g12755 Brassica carinata HOM05D003500 ORTHO05D003919 9.9e-19 98.2 284 33.1
THA.LOC104818564 Tarenaya hassleriana HOM05D003500 ORTHO05D003919 9.9e-19 98.2 284 32.4
Thhalv10025931m.g Eutrema salsugineum HOM05D003500 ORTHO05D003919 1.3e-18 97.8 287 33.8
BcaC01g01007 Brassica carinata HOM05D003500 ORTHO05D003919 1.7e-18 97.4 266 35.0
BraA08t33760Z Brassica rapa HOM05D003500 ORTHO05D003919 2.2e-18 97.1 278 32.7
PSO063G0209 Papaver somniferum HOM05D003500 ORTHO05D003919 2.2e-18 97.1 343 29.2
Sed0000644 Sechium edule HOM05D003500 ORTHO05D003919 2.9e-18 96.7 193 39.4
PGSC0003DMG400014491 Solanum tuberosum HOM05D003500 ORTHO05D003919 2.9e-18 96.7 290 33.1
A01p05660 Brassica napus HOM05D003500 ORTHO05D003919 3.8e-18 96.3 283 33.9
CAN.G886.10 Capsicum annuum HOM05D003500 ORTHO05D003919 3.8e-18 96.3 291 33.0
FvH4_6g31220 Fragaria vesca HOM05D003500 ORTHO05D003919 4.9e-18 95.9 257 31.1
Lsat_1_v5_gn_1_49081 Lactuca sativa HOM05D003500 ORTHO05D003919 6.4e-18 95.5 279 33.7
Prupe.3G070800 Prunus persica HOM05D003500 ORTHO05D003919 1.1e-17 94.7 281 32.0
PSO782G3147 Papaver somniferum HOM05D003500 ORTHO05D003919 1.4e-17 94.4 341 28.2
MSTRG.14007 Avicennia marina HOM05D003500 ORTHO05D003919 1.9e-17 94.0 296 32.1
FAN14G5419 Fragaria x ananassa HOM05D003500 ORTHO05D003919 1.9e-17 94.0 255 31.0
BolC1t00621H Brassica oleracea HOM05D003500 ORTHO05D003919 3.2e-17 93.2 284 32.7
C03p87180 Brassica napus HOM05D003500 ORTHO05D003919 7.1e-17 92.0 277 33.9
BolC3t21020H Brassica oleracea HOM05D003500 ORTHO05D003919 7.1e-17 92.0 277 33.9
vmacro18911 Vaccinium macrocarpon HOM05D003500 ORTHO05D003919 7.1e-17 92.0 299 31.8
BraA01t00536Z Brassica rapa HOM05D003500 ORTHO05D003919 9.3e-17 91.7 291 33.3
Sp7g30440 Schrenkiella parvula HOM05D003500 ORTHO05D003919 1.6e-16 90.9 284 31.3
AT4G32680 Arabidopsis thaliana HOM05D003500 ORTHO05D003919 2.1e-16 90.5 288 30.6
Potri.003G055200 Populus trichocarpa HOM05D003500 ORTHO05D003919 2.1e-16 90.5 282 28.0
TWI18G0570 Tripterygium wilfordii HOM05D003500 ORTHO05D003919 2.7e-16 90.1 262 32.4
RcHm_v2.0_Chr2g0137891 Rosa chinensis HOM05D003500 ORTHO05D003919 3.5e-16 89.7 257 30.7
CiPaw.01G239100 Carya illinoinensis HOM05D003500 ORTHO05D003919 4.6e-16 89.4 176 35.8
Oeu014656.1 Olea europaea HOM05D003500 ORTHO05D003919 4.6e-16 89.4 145 41.4
CARHR240660 Cardamine hirsuta HOM05D003500 ORTHO05D003919 6.0e-16 89.0 277 32.9
Aqoxy7G01735 Aquilegia oxysepala HOM05D003500 ORTHO05D003919 1.7e-15 87.4 317 29.7
ECA248G2427 Erigeron canadensis HOM05D002222 ORTHO05D002354 1.7e-15 87.4 295 35.3
Ah.10g025530 Amaranthus hybridus HOM05D003500 ORTHO05D003919 3.9e-15 86.3 283 34.3
Ciclev10027012m.g Citrus clementina HOM05D003500 ORTHO05D003919 3.9e-15 86.3 278 29.5
Actinidia32755 Actinidia chinensis HOM05D003500 ORTHO05D003919 6.6e-15 85.5 261 33.3
AL7G19060 Arabidopsis lyrata HOM05D003500 ORTHO05D003919 6.6e-15 85.5 287 30.7
Cc08_g08590 Coffea canephora HOM05D003500 ORTHO05D003919 1.9e-14 84.0 278 30.2
Sc12g0009290 Simmondsia chinensis HOM05D003500 ORTHO05D003919 2.5e-14 83.6 262 29.4
BcaC09g52062 Brassica carinata HOM05D003500 ORTHO05D003919 4.3e-14 82.8 289 31.5
Oeu000451.1 Olea europaea HOM05D003500 ORTHO05D003919 5.6e-14 82.4 296 31.1
Carub.0007s0785 Capsella rubella HOM05D003500 ORTHO05D003919 1.3e-13 81.3 277 30.0
MD17G1194800 Malus domestica HOM05D003500 ORTHO05D003919 1.6e-13 80.9 276 29.0
Sed0003187 Sechium edule HOM05D003500 ORTHO05D003919 2.1e-13 80.5 299 30.8
VMungo0331G1412 Vigna mungo HOM05D003500 ORTHO05D003919 8.1e-13 78.6 307 28.3
Migut.D01030 Erythranthe guttata HOM05D003500 ORTHO05D003919 1.4e-12 77.8 257 28.0
Hund25650 Selenicereus undatus HOM05D003500 ORTHO05D003919 1.4e-12 77.8 262 28.6
THA.LOC104810618 Tarenaya hassleriana HOM05D003500 ORTHO05D003919 1.4e-12 77.8 265 31.3
HPP92_005532 Vanilla planifolia HOM05D003500 ORTHO05D003919 1.8e-12 77.4 273 28.6
Potri.006G244600 Populus trichocarpa HOM05D003500 ORTHO05D003919 2.4e-12 77.0 236 31.4
C06p07810 Brassica napus HOM05D003500 ORTHO05D003919 3.1e-12 76.6 274 28.8
BolC6t35867H Brassica oleracea HOM05D003500 ORTHO05D003919 4.0e-12 76.3 274 28.5
MSTRG.4733 Avicennia marina HOM05D003500 ORTHO05D003919 6.9e-12 75.5 277 29.2
ECA233G0641 Erigeron canadensis HOM05D003500 ORTHO05D003919 6.9e-12 75.5 257 30.4
A06p01860 Brassica napus HOM05D003500 ORTHO05D003919 9.0e-12 75.1 272 28.3
QL05p023510 Quercus lobata HOM05D003500 ORTHO05D003919 9.0e-12 75.1 146 34.9
Thhalv10012010m.g Eutrema salsugineum HOM05D003500 ORTHO05D003919 1.2e-11 74.7 270 29.6
Thecc.06G088400 Theobroma cacao HOM05D003500 ORTHO05D003919 1.2e-11 74.7 156 34.6
Ca_20390_v3 Cicer arietinum L. HOM05D003500 ORTHO05D003919 2.0e-11 73.9 265 30.9
Dinv30507 Davidia involucrata HOM05D003500 ORTHO05D003919 2.0e-11 73.9 267 32.2
BraA06t23403Z Brassica rapa HOM05D003500 ORTHO05D003919 4.4e-11 72.8 264 30.3
Migut.I00867 Erythranthe guttata HOM05D003500 ORTHO05D003919 4.4e-11 72.8 255 33.3
SalBow2G0526 Salvia bowleyana HOM05D003500 ORTHO05D003919 4.4e-11 72.8 265 28.3
Glyma.08G206700 Glycine max HOM05D003500 ORTHO05D003919 5.8e-11 72.4 316 28.5
CANSAT56G2888 Cannabis sativa HOM05D003500 ORTHO05D003919 1.3e-10 71.2 140 34.3
Sp1g38960 Schrenkiella parvula HOM05D003500 ORTHO05D003919 1.3e-10 71.2 264 28.8
CARHR042490 Cardamine hirsuta HOM05D003500 ORTHO05D003919 1.7e-10 70.9 266 30.1
COL.COLO4_30382 Corchorus olitorius HOM05D003500 ORTHO05D003919 1.7e-10 70.9 163 31.9
Rhsim08G0221500 Rhododendron simsii HOM05D003500 ORTHO05D003919 4.9e-10 69.3 179 33.0
AL7G19270 Arabidopsis lyrata HOM05D002156 ORTHO05D003919 6.4e-10 68.9 125 36.8
AT1G52343 Arabidopsis thaliana HOM05D003500 ORTHO05D003919 1.1e-09 68.2 260 30.0
A08p18080 Brassica napus HOM05D003500 ORTHO05D003919 1.1e-09 68.2 122 36.1
Carub.0001s4135 Capsella rubella HOM05D003500 ORTHO05D003919 1.4e-09 67.8 262 29.4
ClCG07G013080 Citrullus lanatus HOM05D003500 ORTHO05D003919 1.4e-09 67.8 304 26.3
SalBow2G3431 Salvia bowleyana HOM05D003500 ORTHO05D003919 1.4e-09 67.8 266 29.3
C01p06230 Brassica napus HOM05D003500 ORTHO05D003919 1.9e-09 67.4 125 36.0
HanXRQChr02g0053631 Helianthus annuus HOM05D003500 ORTHO05D003919 1.9e-09 67.4 257 27.6
MBI11_g07535_MAGBIO Magnolia biondii HOM05D003500 ORTHO05D003919 1.9e-09 67.4 275 30.9
SGA_v2.0_scaffold68G23002 Striga asiatica HOM05D003500 ORTHO05D003919 1.9e-09 67.4 271 29.5
Lalb_Chr04g0262681 Lupinus albus HOM05D003500 ORTHO05D003919 2.4e-09 67.0 130 35.4
Zm00001eb366780 Zea mays HOM05D039918 ORTHO05D003919 3.2e-09 66.6 128 36.7
ATR0051G010 Amborella trichopoda HOM05D003500 ORTHO05D003919 5.4e-09 65.9 130 36.9
BcaC08g43415 Brassica carinata HOM05D003500 ORTHO05D003919 5.4e-09 65.9 266 27.1
Medtr4g012520 Medicago truncatula HOM05D003500 ORTHO05D003919 7.1e-09 65.5 282 29.1
unitig_32.g11118 Utricularia gibba HOM05D003500 ORTHO05D003919 7.1e-09 65.5 294 26.9
arahy.Tifrunner.gnm1.ann1.AD7SDK Arachis hypogaea HOM05D003500 ORTHO05D003919 9.3e-09 65.1 300 26.3
Manes.11G047100 Manihot esculenta HOM05D003500 ORTHO05D003919 9.3e-09 65.1 290 26.2
Nitab4.5_0000250g0140 Nicotiana tabacum HOM05D003500 ORTHO05D003919 9.3e-09 65.1 287 28.6
Nitab4.5_0000671g0100 Nicotiana tabacum HOM05D003500 ORTHO05D003919 9.3e-09 65.1 221 29.4
Duzib235G1266 Durio zibethinus HOM05D003500 ORTHO05D003919 1.6e-08 64.3 156 32.1
CsaV3_3G025090 Cucumis sativus L. HOM05D003500 ORTHO05D003919 2.1e-08 63.9 298 27.2
Glyma.07G006100 Glycine max HOM05D003500 ORTHO05D003919 2.1e-08 63.9 307 26.1
Sabra06G0191500 Salix brachista HOM05D003500 ORTHO05D003919 2.1e-08 63.9 105 44.8
Solyc03g120180.3 Solanum lycopersicum HOM05D003500 ORTHO05D003919 2.1e-08 63.9 131 34.4
Peaxi162Scf00015g10038 Petunia axillaris HOM05D003500 ORTHO05D003919 2.7e-08 63.5 224 28.1
Sed0015651 Sechium edule HOM05D003500 ORTHO05D003919 2.7e-08 63.5 292 27.4
Gohir.A02G121400 Gossypium hirsutum HOM05D003500 ORTHO05D003919 3.5e-08 63.2 139 34.5
Gorai.002G059400 Gossypium raimondii HOM05D003500 ORTHO05D003919 3.5e-08 63.2 139 35.3
Nitab4.5_0005851g0060 Nicotiana tabacum HOM05D003500 ORTHO05D003919 3.5e-08 63.2 223 29.6
Psat7g252240 Pisum sativum HOM05D003500 ORTHO05D003919 4.6e-08 62.8 296 26.4
Os01g0863400 Oryza sativa ssp. japonica HOM05D003500 ORTHO05D003919 6.0e-08 62.4 306 25.8
Peaxi162Scf00105g00615 Petunia axillaris HOM05D003500 ORTHO05D003919 7.8e-08 62.0 290 28.6
Gohir.D03G063800 Gossypium hirsutum HOM05D003500 ORTHO05D003919 1.0e-07 61.6 166 33.1
arahy.Tifrunner.gnm1.ann1.Y86J0E Arachis hypogaea HOM05D003500 ORTHO05D003919 1.3e-07 61.2 163 29.4
HanXRQChr17g0541731 Helianthus annuus HOM05D003500 ORTHO05D003919 1.3e-07 61.2 256 28.9
Lalb_Chr01g0012691 Lupinus albus HOM05D003500 ORTHO05D003919 2.3e-07 60.5 134 35.1
Eucgr.F03015 Eucalyptus grandis HOM05D003500 ORTHO05D003919 5.1e-07 59.3 261 28.4
unitig_899.g14777 Utricularia gibba HOM05D003500 ORTHO05D003919 6.6e-07 58.9 137 34.3
Cpa.g.sc205.12 Carica papaya HOM05D003500 ORTHO05D003919 1.1e-06 58.2 59 61.0
AL1G60570 Arabidopsis lyrata HOM05D003500 ORTHO05D003919 1.5e-06 57.8 255 29.0
CSS0016282 Camellia sinensis var. sinensis HOM05D003500 ORTHO05D003919 1.5e-06 57.8 83 43.4
CSS0048346 Camellia sinensis var. sinensis HOM05D003500 ORTHO05D003919 1.5e-06 57.8 83 43.4
BcaB02g11002 Brassica carinata HOM05D003500 ORTHO05D003919 5.6e-06 55.8 254 25.6
Manes.04G123600 Manihot esculenta HOM05D003500 ORTHO05D003919 7.3e-06 55.5 218 27.1
Lj3g0021763 Lotus japonicus HOM05D003500 ORTHO05D003919 9.6e-06 55.1 280 27.5


User provided reference genes

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