Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN27G2315 Fragaria x ananassa HOM05D005090 ORTHO05D006142 1.9e-93 345.9 179 100.0
FvH4_2g33950 Fragaria vesca HOM05D005090 ORTHO05D006142 1.6e-89 332.8 179 96.6
FAN24G0633 Fragaria x ananassa HOM05D005090 ORTHO05D006142 1.6e-89 332.8 179 96.6
FAN20G1047 Fragaria x ananassa HOM05D005090 ORTHO05D006142 2.8e-89 332.0 179 96.1
FAN15G0851 Fragaria x ananassa HOM05D005090 ORTHO05D006142 6.2e-89 330.9 179 96.6
RcHm_v2.0_Chr6g0308461 Rosa chinensis HOM05D005090 ORTHO05D006142 3.2e-85 318.5 179 91.1
MD08G1095400 Malus domestica HOM05D005090 ORTHO05D006142 1.3e-67 260.0 180 77.8
Prupe.1G431400 Prunus persica HOM05D005090 ORTHO05D006142 1.6e-65 253.1 179 75.4
Gorai.010G022500 Gossypium raimondii HOM05D005090 ORTHO05D006142 1.1e-64 250.4 179 74.3
Cfa009959 Carpinus fangiana HOM05D005090 ORTHO05D006142 6.9e-64 247.7 179 73.7
Gohir.D06G019036 Gossypium hirsutum HOM05D005090 ORTHO05D006142 6.9e-64 247.7 179 72.6
MD15G1077900 Malus domestica HOM05D005090 ORTHO05D006142 7.6e-63 244.2 180 74.4
CiPaw.15G053600 Carya illinoinensis HOM05D005090 ORTHO05D006142 1.9e-61 239.6 180 73.3
Duzib093G0455 Durio zibethinus HOM05D005090 ORTHO05D006142 1.6e-60 236.5 175 73.1
Phvul.001G024300 Phaseolus vulgaris HOM05D005090 ORTHO05D006142 1.1e-58 230.3 174 70.1
GSVIVG01009445001 Vitis vinifera HOM05D005090 ORTHO05D006142 2.5e-58 229.2 167 70.7
Manes.18G040700 Manihot esculenta HOM05D005090 ORTHO05D006142 3.3e-58 228.8 175 70.3
Glyma.14G085300 Glycine max HOM05D005090 ORTHO05D006142 4.3e-58 228.4 174 71.3
Duzib041G0676 Durio zibethinus HOM05D005090 ORTHO05D006142 5.7e-58 228.0 175 70.3
Atru.chr13.741 Acer truncatum HOM05D005090 ORTHO05D006142 1.3e-57 226.9 179 69.3
TAR376G0388 Trochodendron aralioides HOM05D005090 ORTHO05D006142 8.2e-57 224.2 173 67.6
VMungo0647G1453 Vigna mungo HOM05D005090 ORTHO05D006142 1.4e-56 223.4 174 68.4
Duzib116G0889 Durio zibethinus HOM05D005090 ORTHO05D006142 1.8e-56 223.0 175 68.6
Glyma.17G239400 Glycine max HOM05D005090 ORTHO05D006142 1.8e-56 223.0 172 68.6
Ca_13273_v3 Cicer arietinum L. HOM05D005090 ORTHO05D006142 1.2e-55 220.3 155 72.3
Actinidia01086 Actinidia chinensis HOM05D005090 ORTHO05D006142 3.4e-55 218.8 169 67.5
arahy.Tifrunner.gnm1.ann1.LLUM42 Arachis hypogaea HOM05D005090 ORTHO05D006142 4.5e-55 218.4 176 68.2
arahy.Tifrunner.gnm1.ann1.Q1327U Arachis hypogaea HOM05D005090 ORTHO05D006142 4.5e-55 218.4 176 68.2
Lalb_Chr22g0354971 Lupinus albus HOM05D005090 ORTHO05D006142 4.5e-55 218.4 171 69.0
Ciclev10002608m.g Citrus clementina HOM05D005090 ORTHO05D006142 5.8e-55 218.0 179 64.8
Medtr1g018930 Medicago truncatula HOM05D005090 ORTHO05D006142 5.8e-55 218.0 172 66.9
TWI36G0811 Tripterygium wilfordii HOM05D005090 ORTHO05D006142 1.0e-54 217.2 186 66.7
Actinidia22653 Actinidia chinensis HOM05D005090 ORTHO05D006142 1.3e-54 216.9 175 64.6
Cpa.g.sc21.163 Carica papaya HOM05D005090 ORTHO05D006142 1.7e-54 216.5 180 67.8
Oeu009772.1 Olea europaea HOM05D005090 ORTHO05D006142 1.7e-54 216.5 179 64.2
Haze_18058 Corylus avellana HOM05D005090 ORTHO05D006142 3.8e-54 215.3 244 52.5
Lj5g0006850 Lotus japonicus HOM05D005090 ORTHO05D006142 6.5e-54 214.5 168 69.6
CANSAT25G3428 Cannabis sativa HOM05D005090 ORTHO05D006142 5.5e-53 211.5 154 72.7
ClCG05G020140 Citrullus lanatus HOM05D005090 ORTHO05D006142 1.6e-52 209.9 180 65.0
Nitab4.5_0004730g0030 Nicotiana tabacum HOM05D005090 ORTHO05D006142 2.1e-52 209.5 184 62.5
Aqoxy6G01237 Aquilegia oxysepala HOM05D005090 ORTHO05D006142 4.6e-52 208.4 151 70.9
CANSAT56G0556 Cannabis sativa HOM05D005090 ORTHO05D006142 7.9e-52 207.6 188 64.4
Potri.014G024500 Populus trichocarpa HOM05D005090 ORTHO05D006142 2.3e-51 206.1 174 66.7
Sabra14G0016700 Salix brachista HOM05D005090 ORTHO05D006142 2.3e-51 206.1 179 65.4
Rhsim06G0054600 Rhododendron simsii HOM05D005090 ORTHO05D006142 3.0e-51 205.7 180 62.8
MD17G1062600 Malus domestica HOM05D005090 ORTHO05D006142 5.1e-51 204.9 152 75.7
Nitab4.5_0002548g0010 Nicotiana tabacum HOM05D005090 ORTHO05D006142 1.1e-50 203.8 179 59.2
Sed0019095 Sechium edule HOM05D005090 ORTHO05D006142 1.5e-50 203.4 145 73.1
Haze_18064 Corylus avellana HOM05D005090 ORTHO05D006142 3.3e-50 202.2 281 45.9
Thecc.08G002400 Theobroma cacao HOM05D005090 ORTHO05D006142 5.7e-50 201.4 175 62.9
Peaxi162Scf00121g00414 Petunia axillaris HOM05D005090 ORTHO05D006142 2.2e-49 199.5 177 61.6
PGR031G1041 Punica granatum HOM05D005090 ORTHO05D006142 3.7e-49 198.7 175 61.1
Sed0001046 Sechium edule HOM05D005090 ORTHO05D006142 3.7e-49 198.7 158 69.0
Eucgr.F02314 Eucalyptus grandis HOM05D005090 ORTHO05D006142 4.8e-49 198.4 139 70.5
MELO3C016776.2 Cucumis melo HOM05D005090 ORTHO05D006142 8.2e-49 197.6 182 61.5
CSS0005413 Camellia sinensis var. sinensis HOM05D005090 ORTHO05D006142 1.1e-48 197.2 181 63.0
Potri.002G123400 Populus trichocarpa HOM05D005090 ORTHO05D006142 1.8e-48 196.4 168 65.5
COL.COLO4_10129 Corchorus olitorius HOM05D005090 ORTHO05D006142 2.4e-48 196.1 207 56.0
MBI16_g23060_MAGBIO Magnolia biondii HOM05D005090 ORTHO05D006142 3.1e-48 195.7 171 62.6
Nn1g04760 Nelumbo nucifera HOM05D005090 ORTHO05D006142 5.3e-48 194.9 184 60.9
PGSC0003DMG400007949 Solanum tuberosum HOM05D005090 ORTHO05D006142 5.3e-48 194.9 182 57.7
AUR62036618 Chenopodium quinoa HOM05D005090 ORTHO05D006142 9.0e-48 194.1 156 67.9
Solyc04g078600.3 Solanum lycopersicum HOM05D005090 ORTHO05D006142 1.2e-47 193.7 185 56.2
Sopen04g032180 Solanum pennellii HOM05D005090 ORTHO05D006142 1.2e-47 193.7 181 56.9
MSTRG.1060 Avicennia marina HOM05D005090 ORTHO05D006142 2.6e-47 192.6 169 62.1
CAN.G1030.34 Capsicum annuum HOM05D005090 ORTHO05D006142 3.4e-47 192.2 158 62.7
Sc15g0005920 Simmondsia chinensis HOM05D005090 ORTHO05D006142 7.7e-47 191.0 171 62.0
THA.LOC104807114 Tarenaya hassleriana HOM05D005090 ORTHO05D006142 7.7e-47 191.0 153 65.4
Nn5g30374 Nelumbo nucifera HOM05D005090 ORTHO05D006142 3.8e-46 188.7 177 62.1
Hma1.2p1_0360F.1_g135840 Hydrangea macrophylla HOM05D005090 ORTHO05D006142 5.0e-46 188.3 157 66.2
DCAR_019423 Daucus carota HOM05D005090 ORTHO05D006142 1.4e-45 186.8 174 58.6
Manes.05G176500 Manihot esculenta HOM05D005090 ORTHO05D006142 1.9e-45 186.4 122 79.5
Aa31LG3G14010 Aethionema arabicum HOM05D005090 ORTHO05D006142 5.5e-45 184.9 150 62.0
HanXRQChr04g0103471 Helianthus annuus HOM05D005090 ORTHO05D006142 5.5e-45 184.9 176 58.0
Hma1.2p1_0634F.1_g193080 Hydrangea macrophylla HOM05D005090 ORTHO05D006142 5.5e-45 184.9 184 58.2
EL10As7g23773 Beta vulgaris HOM05D005090 ORTHO05D006142 9.4e-45 184.1 149 67.1
Lsat_1_v5_gn_1_22101 Lactuca sativa HOM05D005090 ORTHO05D006142 9.4e-45 184.1 185 55.1
Psat6g014640 Pisum sativum HOM05D005090 ORTHO05D006142 1.6e-44 183.3 174 59.2
Cc10_g04780 Coffea canephora HOM05D005090 ORTHO05D006142 2.7e-44 182.6 173 56.6
SalBow7G1773 Salvia bowleyana HOM05D005090 ORTHO05D006142 2.7e-44 182.6 175 54.3
Thhalv10005720m.g Eutrema salsugineum HOM05D005090 ORTHO05D006142 4.6e-44 181.8 169 58.0
PSO541G4295 Papaver somniferum HOM05D005090 ORTHO05D006142 1.0e-43 180.6 181 59.1
PSO675G4571 Papaver somniferum HOM05D005090 ORTHO05D006142 1.4e-43 180.3 181 58.0
CARHR184350 Cardamine hirsuta HOM05D005090 ORTHO05D006142 1.8e-43 179.9 176 58.0
Sp2g18330 Schrenkiella parvula HOM05D005090 ORTHO05D006142 1.8e-43 179.9 147 62.6
Carub.0008s0737 Capsella rubella HOM05D005090 ORTHO05D006142 2.3e-43 179.5 177 56.5
C07p38740 Brassica napus HOM05D005090 ORTHO05D006142 5.1e-43 178.3 145 62.8
BolC7t44393H Brassica oleracea HOM05D005090 ORTHO05D006142 5.1e-43 178.3 145 62.8
Hund05334 Selenicereus undatus HOM05D005090 ORTHO05D006142 5.1e-43 178.3 188 56.9
A06p39530 Brassica napus HOM05D005090 ORTHO05D006142 6.7e-43 177.9 145 62.8
BolC2t11671H Brassica oleracea HOM05D005090 ORTHO05D006142 6.7e-43 177.9 171 57.9
BraA06t26868Z Brassica rapa HOM05D005090 ORTHO05D006142 8.8e-43 177.6 145 62.8
BcaC03g17615 Brassica carinata HOM05D005090 ORTHO05D006142 4.3e-42 175.3 170 55.9
AT5G47830 Arabidopsis thaliana HOM05D005090 ORTHO05D006142 5.7e-42 174.9 148 62.2
AUR62038807 Chenopodium quinoa HOM05D005090 ORTHO05D006142 5.7e-42 174.9 178 56.7
A02p37140 Brassica napus HOM05D005090 ORTHO05D006142 1.7e-41 173.3 176 54.0
BraA02t08700Z Brassica rapa HOM05D005090 ORTHO05D006142 1.7e-41 173.3 176 54.0
C02p56140 Brassica napus HOM05D005090 ORTHO05D006142 2.2e-41 172.9 170 55.3
Lj4C63T3 Lonicera japonica HOM05D005090 ORTHO05D006142 6.3e-41 171.4 121 70.2
AL8G19800 Arabidopsis lyrata HOM05D005090 ORTHO05D006142 1.4e-40 170.2 174 56.3
ECA246G0692 Erigeron canadensis HOM05D005090 ORTHO05D006142 1.8e-40 169.9 173 53.2
BcaB07g30052 Brassica carinata HOM05D005090 ORTHO05D006142 3.1e-40 169.1 169 55.6
HanXRQChr05g0150671 Helianthus annuus HOM05D005090 ORTHO05D006142 3.1e-40 169.1 165 55.2
ATR0762G034 Amborella trichopoda HOM05D005090 ORTHO05D006142 1.2e-39 167.2 145 57.9
Oeu037620.1 Olea europaea HOM05D005090 ORTHO05D006142 1.3e-38 163.7 120 65.0
CDE06G1995 Ceratophyllum demersum HOM05D005090 ORTHO05D006142 6.5e-38 161.4 151 58.9
unitig_26.g9810 Utricularia gibba HOM05D005090 ORTHO05D006142 1.1e-37 160.6 180 52.8
SEGI_34157 Sequoiadendron giganteum HOM05D005090 ORTHO05D006142 7.2e-37 157.9 169 50.9
SGA_v2.0_scaffold197G41030 Striga asiatica HOM05D005090 ORTHO05D006142 3.6e-36 155.6 234 42.7
ECA247G1795 Erigeron canadensis HOM05D005090 ORTHO05D006142 2.3e-35 152.9 135 59.3
Os02g0158600 Oryza sativa ssp. japonica HOM05D005090 ORTHO05D006142 2.6e-34 149.4 138 55.8
Zm00001eb232600 Zea mays HOM05D005090 ORTHO05D006142 3.3e-34 149.1 138 57.2
Migut.C00536 Erythranthe guttata HOM05D005090 ORTHO05D006142 8.2e-33 144.4 181 49.2
EL10As7g23770 Beta vulgaris HOM05D005090 ORTHO05D006142 4.1e-32 142.1 151 56.3
BcaB05g23208 Brassica carinata HOM05D005090 ORTHO05D006142 9.1e-32 141.0 124 58.1
BcaB04g18280 Brassica carinata HOM05D005090 ORTHO05D006142 2.6e-31 139.4 117 60.7
CsaV3_4G034590 Cucumis sativus L. HOM05D005090 ORTHO05D006142 2.6e-31 139.4 181 49.2
Nitab4.5_0012973g0030 Nicotiana tabacum HOM05D005090 ORTHO05D006142 5.9e-31 138.3 120 57.5
TAR628G0694 Trochodendron aralioides HOM05D005090 ORTHO05D006142 8.5e-30 134.4 102 71.6
Pp3c10_3910 Physcomitrium patens HOM05D005090 ORTHO05D006142 2.7e-28 129.4 151 47.7
vmacro04554 Vaccinium macrocarpon HOM05D005090 ORTHO05D006142 6.1e-28 128.3 247 35.2
Mapoly0121s0046 Marchantia polymorpha HOM05D005090 ORTHO05D006142 1.4e-27 127.1 184 42.4
Pp3c14_4680 Physcomitrium patens HOM05D005090 ORTHO05D006142 2.3e-27 126.3 149 46.3
Pp3c14_4740 Physcomitrium patens HOM05D005090 ORTHO05D006142 2.3e-27 126.3 149 46.3
AagrBONN_evm.TU.Sc2ySwM_340.334 Anthoceros agrestis HOM05D005090 ORTHO05D006142 2.6e-26 122.9 152 44.7
EL10As7g23766 Beta vulgaris HOM05D005090 ORTHO05D006142 1.7e-25 120.2 128 56.2
EL10As7g23771 Beta vulgaris HOM05D005090 ORTHO05D006142 1.7e-25 120.2 128 56.2
Nitab4.5_0005621g0060 Nicotiana tabacum HOM05D005090 ORTHO05D006142 2.4e-24 116.3 100 57.0
MD06G1210300 Malus domestica HOM05D005090 ORTHO05D006142 1.0e-22 110.9 90 70.0
AUR62044449 Chenopodium quinoa HOM05D005090 ORTHO05D006142 1.7e-22 110.2 119 55.5
SMO140G0004 Selaginella moellendorffii HOM05D002426 ORTHO05D002873 2.9e-22 109.4 205 36.1
Sc02g0007470 Simmondsia chinensis HOM05D005090 ORTHO05D006142 7.2e-21 104.8 172 38.4
BcaB01g00393 Brassica carinata HOM05D005090 ORTHO05D006142 1.5e-18 97.1 103 51.5
EL10As7g23765 Beta vulgaris HOM05D005090 ORTHO05D006142 7.0e-16 88.2 115 50.4
CBR_g12766 Chara braunii HOM05D005090 ORTHO05D006142 7.0e-16 88.2 172 38.4
BcaC02g09103 Brassica carinata HOM05D005090 ORTHO05D006142 3.6e-12 75.9 95 51.6
C04p38460 Brassica napus HOM05D005090 ORTHO05D006142 8.0e-12 74.7 95 51.6
BolC6t37479H Brassica oleracea HOM05D005090 ORTHO05D006142 4.0e-11 72.4 95 50.5
BcaC03g17171 Brassica carinata HOM05D005090 ORTHO05D006142 6.8e-11 71.6 95 50.5
BolC2t11185H Brassica oleracea HOM05D005090 ORTHO05D006142 6.8e-11 71.6 95 50.5
C02p38970 Brassica napus HOM05D005090 ORTHO05D006142 1.5e-10 70.5 91 51.6
BolC2t09908H Brassica oleracea HOM05D005090 ORTHO05D006142 1.5e-10 70.5 91 51.6
Sabra02G0096900 Salix brachista HOM05D005090 ORTHO05D006142 2.2e-09 66.6 58 60.3
Sabra02G0096800 Salix brachista HOM05D005090 ORTHO05D006142 8.3e-09 64.7 48 70.8
CDE04G2695 Ceratophyllum demersum HOM05D005090 ORTHO05D006142 5.0e-06 55.5 51 62.7


User provided reference genes

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