Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN27G2280 Fragaria x ananassa HOM05D004637 ORTHO05D005320 6.2e-129 464.2 235 100.0
FAN15G1438 Fragaria x ananassa HOM05D004637 ORTHO05D005320 2.0e-119 432.6 235 94.5
FvH4_2g33730 Fragaria vesca HOM05D004637 ORTHO05D005320 9.9e-103 377.1 228 87.3
RcHm_v2.0_Chr6g0308821 Rosa chinensis HOM05D004637 ORTHO05D005320 8.1e-97 357.5 228 82.9
Prupe.1G430800 Prunus persica HOM05D004637 ORTHO05D005320 5.1e-91 338.2 228 77.2
RcHm_v2.0_Chr0c32g0501551 Rosa chinensis HOM05D004637 ORTHO05D005320 3.3e-90 335.5 229 79.0
FAN20G0860 Fragaria x ananassa HOM05D004637 ORTHO05D005320 5.6e-90 334.7 264 70.5
Hma1.2p1_0360F.1_g135900 Hydrangea macrophylla HOM05D004637 ORTHO05D005320 6.9e-88 327.8 234 70.9
MD08G1093700 Malus domestica HOM05D004637 ORTHO05D005320 9.0e-88 327.4 228 74.6
MD15G1077400 Malus domestica HOM05D004637 ORTHO05D005320 4.5e-87 325.1 228 73.7
Migut.N02728 Erythranthe guttata HOM05D004637 ORTHO05D005320 4.9e-86 321.6 228 71.9
Lj4A64T29 Lonicera japonica HOM05D004637 ORTHO05D005320 4.9e-86 321.6 228 70.2
MELO3C010837.2 Cucumis melo HOM05D004637 ORTHO05D005320 6.4e-86 321.2 234 68.8
CsaV3_2G026470 Cucumis sativus L. HOM05D004637 ORTHO05D005320 6.4e-86 321.2 234 68.8
Glyma.17G238800 Glycine max HOM05D004637 ORTHO05D005320 6.4e-86 321.2 228 71.5
Medtr1g018800 Medicago truncatula HOM05D004637 ORTHO05D005320 1.4e-85 320.1 228 72.8
CAN.G1194.20 Capsicum annuum HOM05D004637 ORTHO05D005320 2.4e-85 319.3 225 72.0
Cfa018057 Carpinus fangiana HOM05D004637 ORTHO05D005320 3.2e-85 318.9 225 73.8
Glyma.14G085900 Glycine max HOM05D004637 ORTHO05D005320 4.2e-85 318.5 228 70.6
QL02p003978 Quercus lobata HOM05D004637 ORTHO05D005320 4.2e-85 318.5 228 70.6
CSS0035210 Camellia sinensis var. sinensis HOM05D004637 ORTHO05D005320 5.5e-85 318.2 228 70.2
Dinv35927 Davidia involucrata HOM05D004637 ORTHO05D005320 7.1e-85 317.8 234 68.4
Potri.014G023800 Populus trichocarpa HOM05D004637 ORTHO05D005320 7.1e-85 317.8 234 69.2
Dinv39271 Davidia involucrata HOM05D004637 ORTHO05D005320 9.3e-85 317.4 234 68.8
Actinidia08272 Actinidia chinensis HOM05D004637 ORTHO05D005320 1.2e-84 317.0 234 69.2
Psat6g015000 Pisum sativum HOM05D004637 ORTHO05D005320 1.2e-84 317.0 228 70.2
Oeu045704.1 Olea europaea HOM05D004637 ORTHO05D005320 2.1e-84 316.2 226 71.2
Sed0017846 Sechium edule HOM05D004637 ORTHO05D005320 2.1e-84 316.2 234 67.1
Aqoxy5G01163 Aquilegia oxysepala HOM05D004637 ORTHO05D005320 2.7e-84 315.8 229 70.3
TPR.G3787 Trifolium pratense HOM05D004637 ORTHO05D005320 2.7e-84 315.8 228 70.6
Sabra14G0016200 Salix brachista HOM05D004637 ORTHO05D005320 3.5e-84 315.5 228 70.2
MSTRG.25070 Avicennia marina HOM05D004637 ORTHO05D005320 6.0e-84 314.7 228 70.2
CiPaw.15G052200 Carya illinoinensis HOM05D004637 ORTHO05D005320 6.0e-84 314.7 225 72.0
CANSAT54G2334 Cannabis sativa HOM05D004637 ORTHO05D005320 7.9e-84 314.3 228 70.2
Sopen12g030560 Solanum pennellii HOM05D004637 ORTHO05D005320 7.9e-84 314.3 225 71.1
PGSC0003DMG400015434 Solanum tuberosum HOM05D004637 ORTHO05D005320 7.9e-84 314.3 225 71.6
Manes.05G177100 Manihot esculenta HOM05D004637 ORTHO05D005320 1.8e-83 313.2 228 69.3
Lj5g0011390 Lotus japonicus HOM05D004637 ORTHO05D005320 3.9e-83 312.0 228 71.5
Thecc.08G001300 Theobroma cacao HOM05D004637 ORTHO05D005320 3.9e-83 312.0 234 68.8
Zm00001eb104960 Zea mays HOM05D004637 ORTHO05D005320 5.1e-83 311.6 229 68.6
Solyc12g088660.2 Solanum lycopersicum HOM05D004637 ORTHO05D005320 6.7e-83 311.2 225 70.2
Cc10_g04860 Coffea canephora HOM05D004637 ORTHO05D005320 3.3e-82 308.9 227 69.2
TAR381G1093 Trochodendron aralioides HOM05D004637 ORTHO05D005320 3.3e-82 308.9 228 68.9
Nn5g30394 Nelumbo nucifera HOM05D004637 ORTHO05D005320 4.3e-82 308.5 234 66.2
PSO210G5934 Papaver somniferum HOM05D004637 ORTHO05D005320 4.3e-82 308.5 234 65.8
THA.LOC104824981 Tarenaya hassleriana HOM05D004637 ORTHO05D005320 4.3e-82 308.5 225 68.4
ClCG08G016150 Citrullus lanatus HOM05D004637 ORTHO05D005320 5.6e-82 308.1 234 67.1
TAR628G0069 Trochodendron aralioides HOM05D004637 ORTHO05D005320 7.4e-82 307.8 233 67.8
PSO170G3952 Papaver somniferum HOM05D004637 ORTHO05D005320 9.6e-82 307.4 234 66.2
Phvul.001G024600 Phaseolus vulgaris HOM05D004637 ORTHO05D005320 9.6e-82 307.4 228 69.7
Eucgr.F00183 Eucalyptus grandis HOM05D004637 ORTHO05D005320 1.3e-81 307.0 228 68.9
GSVIVG01009436001 Vitis vinifera HOM05D004637 ORTHO05D005320 1.6e-81 306.6 228 69.3
Lsat_1_v5_gn_1_22460 Lactuca sativa HOM05D004637 ORTHO05D005320 2.1e-81 306.2 228 66.2
EL10As7g23788 Beta vulgaris HOM05D004637 ORTHO05D005320 2.8e-81 305.8 240 66.2
Atru.chr13.748 Acer truncatum HOM05D004637 ORTHO05D005320 3.7e-81 305.4 228 68.0
FAN24G1748 Fragaria x ananassa HOM05D004637 ORTHO05D005320 3.7e-81 305.4 235 73.2
Os07g0479200 Oryza sativa ssp. japonica HOM05D004637 ORTHO05D005320 3.7e-81 305.4 228 68.4
TAR628G0193 Trochodendron aralioides HOM05D004637 ORTHO05D005320 4.8e-81 305.1 229 68.1
Gohir.D05G208900 Gossypium hirsutum HOM05D004637 ORTHO05D005320 6.2e-81 304.7 234 66.7
Gohir.A05G205600 Gossypium hirsutum HOM05D004637 ORTHO05D005320 8.1e-81 304.3 234 66.2
VMungo0647G2267 Vigna mungo HOM05D004637 ORTHO05D005320 1.1e-80 303.9 227 68.3
Carub.0006s2649 Capsella rubella HOM05D004637 ORTHO05D005320 4.0e-80 302.0 225 67.1
TWI56G1297 Tripterygium wilfordii HOM05D004637 ORTHO05D005320 6.9e-80 301.2 228 67.5
AL6G41290 Arabidopsis lyrata HOM05D004637 ORTHO05D005320 9.0e-80 300.8 225 66.7
A03p27890 Brassica napus HOM05D004637 ORTHO05D005320 9.0e-80 300.8 225 67.1
C03p33670 Brassica napus HOM05D004637 ORTHO05D005320 1.2e-79 300.4 225 67.1
BolC3t15687H Brassica oleracea HOM05D004637 ORTHO05D005320 1.2e-79 300.4 225 67.1
BraA03t12001Z Brassica rapa HOM05D004637 ORTHO05D005320 1.2e-79 300.4 225 67.1
BcaB01g02883 Brassica carinata HOM05D004637 ORTHO05D005320 1.5e-79 300.1 225 67.1
Thhalv10028929m.g Eutrema salsugineum HOM05D004637 ORTHO05D005320 2.0e-79 299.7 225 66.7
AT4G07390 Arabidopsis thaliana HOM05D004637 ORTHO05D005320 2.6e-79 299.3 225 66.7
Gorai.009G215300 Gossypium raimondii HOM05D004637 ORTHO05D005320 4.5e-79 298.5 235 65.5
TWI36G0292 Tripterygium wilfordii HOM05D004637 ORTHO05D005320 1.0e-78 297.4 228 65.8
Sp6g10610 Schrenkiella parvula HOM05D004637 ORTHO05D005320 2.2e-78 296.2 225 66.7
THA.LOC104825764 Tarenaya hassleriana HOM05D004637 ORTHO05D005320 2.2e-78 296.2 225 64.9
CARHR288440 Cardamine hirsuta HOM05D004637 ORTHO05D005320 2.9e-78 295.8 225 65.8
HanXRQChr10g0309661 Helianthus annuus HOM05D004637 ORTHO05D005320 2.9e-78 295.8 228 65.4
unitig_26.g9809 Utricularia gibba HOM05D004637 ORTHO05D005320 2.9e-78 295.8 228 66.2
Aa31LG8G3140 Aethionema arabicum HOM05D004637 ORTHO05D005320 1.2e-76 290.4 225 64.9
Ah.08g212480 Amaranthus hybridus HOM05D004637 ORTHO05D005320 1.2e-76 290.4 252 59.9
CiPaw.16G038000 Carya illinoinensis HOM05D004637 ORTHO05D005320 2.3e-75 286.2 223 66.4
HPP92_003482 Vanilla planifolia HOM05D004637 ORTHO05D005320 2.3e-75 286.2 234 60.7
PGR031G3707 Punica granatum HOM05D004637 ORTHO05D005320 8.7e-75 284.3 229 64.2
AL8G35940 Arabidopsis lyrata HOM05D004637 ORTHO05D005320 1.3e-73 280.4 228 62.7
Nitab4.5_0006486g0040 Nicotiana tabacum HOM05D004637 ORTHO05D005320 2.1e-73 279.6 235 63.4
CDE01G0812 Ceratophyllum demersum HOM05D004637 ORTHO05D005320 2.8e-73 279.3 224 64.3
BcaC01g04795 Brassica carinata HOM05D004637 ORTHO05D005320 4.8e-73 278.5 218 65.6
Sc02g0007520 Simmondsia chinensis HOM05D004637 ORTHO05D005320 4.8e-73 278.5 226 63.3
PGR083G2827 Punica granatum HOM05D004637 ORTHO05D005320 2.4e-72 276.2 220 62.7
Eucgr.F02306 Eucalyptus grandis HOM05D004637 ORTHO05D005320 3.1e-72 275.8 228 61.8
Thhalv10015267m.g Eutrema salsugineum HOM05D004637 ORTHO05D005320 4.1e-72 275.4 228 61.8
CARHR285840 Cardamine hirsuta HOM05D004637 ORTHO05D005320 9.0e-72 274.2 234 59.8
Carub.0008s2014 Capsella rubella HOM05D004637 ORTHO05D005320 1.2e-71 273.9 225 60.9
arahy.Tifrunner.gnm1.ann1.RG91LC Arachis hypogaea HOM05D004637 ORTHO05D005320 1.5e-71 273.5 215 67.4
arahy.Tifrunner.gnm1.ann1.UI0UDP Arachis hypogaea HOM05D004637 ORTHO05D005320 1.5e-71 273.5 215 67.4
Nitab4.5_0006004g0010 Nicotiana tabacum HOM05D004637 ORTHO05D005320 2.0e-71 273.1 225 65.3
SEGI_04928 Sequoiadendron giganteum HOM05D004637 ORTHO05D005320 4.5e-71 271.9 227 61.2
Rhsim07G0225500 Rhododendron simsii HOM05D004637 ORTHO05D005320 2.9e-70 269.2 255 58.8
Oeu037612.1 Olea europaea HOM05D004637 ORTHO05D005320 7.2e-69 264.6 190 71.6
Actinidia38079 Actinidia chinensis HOM05D004637 ORTHO05D005320 6.1e-68 261.5 202 67.3
Ciclev10002344m.g Citrus clementina HOM05D004637 ORTHO05D005320 1.8e-67 260.0 228 58.3
ECA247G2514 Erigeron canadensis HOM05D004637 ORTHO05D005320 1.5e-66 256.9 200 64.5
Manes.18G041200 Manihot esculenta HOM05D004637 ORTHO05D005320 1.6e-65 253.4 191 68.1
Duzib093G0653 Durio zibethinus HOM05D004637 ORTHO05D005320 2.8e-65 252.7 228 60.1
BcaC03g14011 Brassica carinata HOM05D004637 ORTHO05D005320 1.4e-64 250.4 228 55.3
BolC2t07347H Brassica oleracea HOM05D004637 ORTHO05D005320 1.4e-64 250.4 228 55.3
C02p12470 Brassica napus HOM05D004637 ORTHO05D005320 3.1e-64 249.2 228 54.8
BcaB05g22509 Brassica carinata HOM05D004637 ORTHO05D005320 4.1e-64 248.8 225 56.4
A02p07110 Brassica napus HOM05D004637 ORTHO05D005320 5.3e-64 248.4 228 55.7
BraA02t05792Z Brassica rapa HOM05D004637 ORTHO05D005320 5.3e-64 248.4 228 55.7
Haze_18072 Corylus avellana HOM05D004637 ORTHO05D005320 1.5e-63 246.9 191 68.1
Peaxi162Scf01087g00125 Petunia axillaris HOM05D004637 ORTHO05D005320 3.4e-63 245.7 157 77.1
BolC3t13818H Brassica oleracea HOM05D004637 ORTHO05D005320 3.2e-61 239.2 223 55.2
SMO365G0080 Selaginella moellendorffii HOM05D004637 ORTHO05D005320 7.2e-61 238.0 228 53.5
Nitab4.5_0004339g0040 Nicotiana tabacum HOM05D004637 ORTHO05D005320 1.4e-59 233.8 170 68.2
vmacro21608 Vaccinium macrocarpon HOM05D004637 ORTHO05D005320 2.3e-59 233.0 175 69.1
HPP92_026880 Vanilla planifolia HOM05D004637 ORTHO05D005320 2.0e-58 229.9 161 68.3
Pp3c3_8350 Physcomitrium patens HOM05D004637 ORTHO05D005320 1.7e-57 226.9 234 50.0
Peaxi162Scf00160g00034 Petunia axillaris HOM05D004637 ORTHO05D005320 2.2e-57 226.5 171 67.3
Nitab4.5_0010118g0060 Nicotiana tabacum HOM05D004637 ORTHO05D005320 5.3e-56 221.9 226 53.5
Mapoly0040s0013 Marchantia polymorpha HOM05D004637 ORTHO05D005320 1.2e-55 220.7 230 50.9
Pp3c4_22670 Physcomitrium patens HOM05D004637 ORTHO05D005320 3.8e-54 215.7 230 47.8
CBR_g40794 Chara braunii HOM05D004637 ORTHO05D005320 8.8e-51 204.5 222 50.5
CBR_g8228 Chara braunii HOM05D004637 ORTHO05D005320 2.4e-48 196.4 219 49.8
AagrBONN_evm.TU.Sc2ySwM_344.2883 Anthoceros agrestis HOM05D004637 ORTHO05D005320 5.5e-45 185.3 191 50.3
SalBow7G4009 Salvia bowleyana HOM05D004637 ORTHO05D005320 1.2e-44 184.1 150 64.0
Lalb_Chr22g0354931 Lupinus albus HOM05D004637 ORTHO05D005320 1.1e-42 177.6 109 78.9
AT5G59470 Arabidopsis thaliana HOM05D004637 ORTHO05D005320 2.0e-42 176.8 159 56.6
Sp6g21160 Schrenkiella parvula HOM05D004637 ORTHO05D005320 5.7e-42 175.3 159 57.2
SGA_v2.0_scaffold588G53062 Striga asiatica HOM05D004637 ORTHO05D005320 2.0e-39 166.8 262 43.9
QL07p047618 Quercus lobata HOM05D004637 ORTHO05D005320 4.2e-37 159.1 102 73.5
BcaC01g04787 Brassica carinata HOM05D004637 ORTHO05D005320 2.8e-33 146.4 124 60.5
Cpa.g.sc21.155 Carica papaya HOM05D004637 ORTHO05D005320 2.8e-33 146.4 128 61.7
Lalb_Chr22g0354941 Lupinus albus HOM05D004637 ORTHO05D005320 4.1e-32 142.5 135 59.3
AUR62002897 Chenopodium quinoa HOM05D004637 ORTHO05D005320 5.4e-32 142.1 130 56.2
AUR62035253 Chenopodium quinoa HOM05D004637 ORTHO05D005320 5.4e-32 142.1 130 56.2
Hund04212 Selenicereus undatus HOM05D004637 ORTHO05D005320 9.1e-32 141.4 131 55.0
SGA_v2.0_scaffold137G35065 Striga asiatica HOM05D004637 ORTHO05D005320 3.2e-29 132.9 78 75.6
PRCOL_00005305 Prasinoderma coloniale HOM05D004637 ORTHO05D005320 2.0e-23 113.6 202 35.6
BcaB01g04583 Brassica carinata HOM05D004637 ORTHO05D005320 1.3e-22 110.9 105 51.4
QL11p041834 Quercus lobata HOM05D001716 ORTHO05D004234 5.0e-22 109.0 98 60.2
RcHm_v2.0_Chr1g0356881 Rosa chinensis HOM05D004637 ORTHO05D005320 2.3e-19 100.1 148 47.3
Cre17.g722500 Chlamydomonas reinhardtii HOM05D004637 ORTHO05D005320 3.0e-19 99.8 205 31.7
Cc02_g27600 Coffea canephora HOM05D004637 ORTHO05D005320 4.4e-18 95.9 74 59.5
COL.COLO4_10117 Corchorus olitorius HOM05D004637 ORTHO05D005320 1.2e-15 87.8 49 83.7
Peaxi162Scf00160g00035 Petunia axillaris HOM05D004637 ORTHO05D005320 1.6e-15 87.4 54 74.1
MCO13G491 Micromonas commoda HOM05D004637 ORTHO05D005320 2.5e-13 80.1 215 29.3
MCO13G508 Micromonas commoda HOM05D004637 ORTHO05D005320 2.5e-13 80.1 215 29.3
Ca_13257_v3 Cicer arietinum L. HOM05D004637 ORTHO05D005320 9.5e-13 78.2 52 71.2
BcaC01g06520 Brassica carinata HOM05D004637 ORTHO05D005320 3.1e-11 73.2 47 72.3
Cre06.g261300 Chlamydomonas reinhardtii HOM05D004637 ORTHO05D005320 2.2e-09 67.0 147 29.9
BcaB02g11171 Brassica carinata HOM05D037786 ORTHO05D091371 2.9e-09 66.6 48 60.4
HPP92_014526 Vanilla planifolia HOM05D004637 ORTHO05D005320 4.9e-09 65.9 50 56.0
Pp3c10_370 Physcomitrium patens HOM05D004637 ORTHO05D005320 2.4e-08 63.5 55 58.2
Peaxi162Scf00160g00024 Petunia axillaris HOM05D004637 ORTHO05D005320 1.2e-07 61.2 33 87.9


User provided reference genes

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