Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_2g25680 Fragaria vesca HOM05D005224 ORTHO05D006372 1.8e-43 178.7 83 100.0
FAN15G2088 Fragaria x ananassa HOM05D005224 ORTHO05D006372 1.8e-43 178.7 83 100.0
FAN20G0551 Fragaria x ananassa HOM05D005224 ORTHO05D006372 1.8e-43 178.7 83 100.0
FAN27G2170 Fragaria x ananassa HOM05D005224 ORTHO05D006372 1.8e-43 178.7 83 100.0
RcHm_v2.0_Chr6g0293941 Rosa chinensis HOM05D005224 ORTHO05D006372 3.1e-43 177.9 83 98.8
MD03G1287600 Malus domestica HOM05D005224 ORTHO05D006372 4.2e-40 167.5 81 95.1
Prupe.8G260800 Prunus persica HOM05D005224 ORTHO05D006372 9.4e-40 166.4 81 93.8
CANSAT25G2283 Cannabis sativa HOM05D005224 ORTHO05D006372 6.7e-38 160.2 84 90.5
Lalb_Chr04g0259841 Lupinus albus HOM05D005224 ORTHO05D006372 1.1e-37 159.5 82 89.0
Phvul.001G207200 Phaseolus vulgaris HOM05D005224 ORTHO05D006372 2.0e-37 158.7 82 89.0
Psat3g022120 Pisum sativum HOM05D005224 ORTHO05D006372 2.5e-37 158.3 82 87.8
Ciclev10033216m.g Citrus clementina HOM05D005224 ORTHO05D006372 3.3e-37 157.9 84 88.1
Cfa005919 Carpinus fangiana HOM05D005224 ORTHO05D006372 5.7e-37 157.1 83 90.4
Haze_04931 Corylus avellana HOM05D005224 ORTHO05D006372 7.4e-37 156.8 83 89.2
Glyma.03G214500 Glycine max HOM05D005224 ORTHO05D006372 7.4e-37 156.8 81 86.4
Manes.05G062300 Manihot esculenta HOM05D005224 ORTHO05D006372 1.3e-36 156.0 85 85.9
Manes.01G218400 Manihot esculenta HOM05D005224 ORTHO05D006372 1.7e-36 155.6 85 84.7
Lalb_Chr15g0078521 Lupinus albus HOM05D005224 ORTHO05D006372 2.2e-36 155.2 82 86.6
Glyma.19G211200 Glycine max HOM05D005224 ORTHO05D006372 2.8e-36 154.8 81 85.2
Eucgr.K03475 Eucalyptus grandis HOM05D005224 ORTHO05D006372 3.7e-36 154.5 84 85.7
Lsat_1_v5_gn_3_24761 Lactuca sativa HOM05D005224 ORTHO05D006372 3.7e-36 154.5 76 92.1
Lj1g0012977 Lotus japonicus HOM05D005224 ORTHO05D006372 3.7e-36 154.5 82 85.4
TAR365G0183 Trochodendron aralioides HOM05D005224 ORTHO05D006372 3.7e-36 154.5 82 87.8
Gohir.A08G075800 Gossypium hirsutum HOM05D005224 ORTHO05D006372 4.8e-36 154.1 84 88.1
Gorai.004G089700 Gossypium raimondii HOM05D005224 ORTHO05D006372 4.8e-36 154.1 84 88.1
TWI23G0618 Tripterygium wilfordii HOM05D005224 ORTHO05D006372 4.8e-36 154.1 82 86.6
Ah.02g128370 Amaranthus hybridus HOM05D005224 ORTHO05D006372 6.3e-36 153.7 81 84.0
ClCG10G010880 Citrullus lanatus HOM05D005224 ORTHO05D006372 1.1e-35 152.9 84 85.7
Gohir.A12G130700 Gossypium hirsutum HOM05D005224 ORTHO05D006372 1.1e-35 152.9 81 86.4
Gohir.D12G134600 Gossypium hirsutum HOM05D005224 ORTHO05D006372 1.1e-35 152.9 81 86.4
Gorai.008G145500 Gossypium raimondii HOM05D005224 ORTHO05D006372 1.1e-35 152.9 81 86.4
Sed0018249 Sechium edule HOM05D005224 ORTHO05D006372 1.1e-35 152.9 84 85.7
vmacro03691 Vaccinium macrocarpon HOM05D005224 ORTHO05D006372 1.1e-35 152.9 76 93.4
arahy.Tifrunner.gnm1.ann1.8KN71Z Arachis hypogaea HOM05D005224 ORTHO05D006372 1.4e-35 152.5 82 86.6
arahy.Tifrunner.gnm1.ann1.EEQ3S4 Arachis hypogaea HOM05D005224 ORTHO05D006372 1.4e-35 152.5 82 86.6
arahy.Tifrunner.gnm1.ann1.U5VDRT Arachis hypogaea HOM05D005224 ORTHO05D006372 1.4e-35 152.5 82 86.6
ECA246G3542 Erigeron canadensis HOM05D005224 ORTHO05D006372 1.4e-35 152.5 75 92.0
Gohir.D08G085200 Gossypium hirsutum HOM05D005224 ORTHO05D006372 1.4e-35 152.5 84 86.9
HanXRQChr06g0173941 Helianthus annuus HOM05D005224 ORTHO05D006372 1.4e-35 152.5 75 92.0
HanXRQChr17g0538761 Helianthus annuus HOM05D005224 ORTHO05D006372 1.4e-35 152.5 75 92.0
TPR.G9599 Trifolium pratense HOM05D005224 ORTHO05D006372 1.4e-35 152.5 82 84.1
AL4G47260 Arabidopsis lyrata HOM05D005224 ORTHO05D006372 1.8e-35 152.1 80 86.2
Duzib133G0273 Durio zibethinus HOM05D005224 ORTHO05D006372 1.8e-35 152.1 84 86.9
Gohir.A08G042400 Gossypium hirsutum HOM05D005224 ORTHO05D006372 1.8e-35 152.1 81 85.2
Gohir.D08G052200 Gossypium hirsutum HOM05D005224 ORTHO05D006372 1.8e-35 152.1 81 85.2
Gorai.004G052300 Gossypium raimondii HOM05D005224 ORTHO05D006372 1.8e-35 152.1 81 85.2
Potri.014G129600 Populus trichocarpa HOM05D005224 ORTHO05D006372 1.8e-35 152.1 81 82.7
Hund11874 Selenicereus undatus HOM05D005224 ORTHO05D006372 1.8e-35 152.1 81 84.0
BcaB02g08753 Brassica carinata HOM05D005224 ORTHO05D006372 2.4e-35 151.8 83 84.3
BcaC07g40762 Brassica carinata HOM05D005224 ORTHO05D006372 2.4e-35 151.8 83 84.3
BcaC07g42731 Brassica carinata HOM05D005224 ORTHO05D006372 2.4e-35 151.8 83 84.3
BcaNung06420 Brassica carinata HOM05D005224 ORTHO05D006372 2.4e-35 151.8 83 84.3
A09p54640 Brassica napus HOM05D005224 ORTHO05D006372 2.4e-35 151.8 83 84.3
C08p37540 Brassica napus HOM05D005224 ORTHO05D006372 2.4e-35 151.8 83 84.3
BraA09t40875Z Brassica rapa HOM05D005224 ORTHO05D006372 2.4e-35 151.8 83 84.3
CDE09G0321 Ceratophyllum demersum HOM05D005224 ORTHO05D006372 2.4e-35 151.8 84 84.5
Migut.D00213 Erythranthe guttata HOM05D005224 ORTHO05D006372 2.4e-35 151.8 81 82.7
Sp5g00730 Schrenkiella parvula HOM05D005224 ORTHO05D006372 2.4e-35 151.8 83 84.3
CsaV3_4G000760 Cucumis sativus L. HOM05D005224 ORTHO05D006372 3.1e-35 151.4 84 84.5
Dinv29760 Davidia involucrata HOM05D005224 ORTHO05D006372 3.1e-35 151.4 74 91.9
Dinv44366 Davidia involucrata HOM05D005224 ORTHO05D006372 3.1e-35 151.4 74 91.9
Sed0019318 Sechium edule HOM05D005224 ORTHO05D006372 3.1e-35 151.4 84 84.5
Thecc.01G299700 Theobroma cacao HOM05D005224 ORTHO05D006372 3.1e-35 151.4 84 85.7
Medtr7g108810 Medicago truncatula HOM05D001413 ORTHO05D001385 4.1e-35 151.0 82 84.1
CARHR143080 Cardamine hirsuta HOM05D005224 ORTHO05D006372 5.3e-35 150.6 80 86.2
Duzib211G0376 Durio zibethinus HOM05D005224 ORTHO05D006372 5.3e-35 150.6 81 85.2
Thhalv10006347m.g Eutrema salsugineum HOM05D005224 ORTHO05D006372 5.3e-35 150.6 83 84.3
Sp4g29630 Schrenkiella parvula HOM05D005224 ORTHO05D006372 5.3e-35 150.6 80 86.2
THA.LOC104817499 Tarenaya hassleriana HOM05D005224 ORTHO05D006372 5.3e-35 150.6 83 84.3
Actinidia24346 Actinidia chinensis HOM05D001413 ORTHO05D001385 6.9e-35 150.2 79 84.8
AT2G47690 Arabidopsis thaliana HOM05D005224 ORTHO05D006372 6.9e-35 150.2 83 83.1
Nn4g25791 Nelumbo nucifera HOM05D005224 ORTHO05D006372 6.9e-35 150.2 76 90.8
HPP92_017223 Vanilla planifolia HOM05D005224 ORTHO05D006372 6.9e-35 150.2 85 82.4
BcaC02g12549 Brassica carinata HOM05D005224 ORTHO05D006372 9.1e-35 149.8 80 86.2
C04p00180 Brassica napus HOM05D005224 ORTHO05D006372 9.1e-35 149.8 80 86.2
BolC4t21665H Brassica oleracea HOM05D005224 ORTHO05D006372 9.1e-35 149.8 80 86.2
CSS0034435 Camellia sinensis var. sinensis HOM05D005224 ORTHO05D006372 9.1e-35 149.8 76 89.5
DCAR_027069 Daucus carota HOM05D005224 ORTHO05D006372 9.1e-35 149.8 76 89.5
PSO210G7006 Papaver somniferum HOM05D005224 ORTHO05D006372 9.1e-35 149.8 84 84.5
TWI14G1007 Tripterygium wilfordii HOM05D005224 ORTHO05D006372 9.1e-35 149.8 83 81.9
AT3G62790 Arabidopsis thaliana HOM05D005224 ORTHO05D006372 1.2e-34 149.4 83 83.1
BraA05t19024Z Brassica rapa HOM05D005224 ORTHO05D006372 1.2e-34 149.4 83 84.3
Carub.0005s2944 Capsella rubella HOM05D005224 ORTHO05D006372 1.2e-34 149.4 83 83.1
Thhalv10001702m.g Eutrema salsugineum HOM05D005224 ORTHO05D006372 1.2e-34 149.4 80 85.0
GSVIVG01035146001 Vitis vinifera HOM05D005224 ORTHO05D006372 1.2e-34 149.4 74 91.9
CARHR173060 Cardamine hirsuta HOM05D005224 ORTHO05D006372 1.5e-34 149.1 83 83.1
Cc04_g11150 Coffea canephora HOM05D005224 ORTHO05D006372 1.5e-34 149.1 82 81.7
MELO3C017960.2 Cucumis melo HOM05D005224 ORTHO05D006372 1.5e-34 149.1 84 83.3
Migut.D02475 Erythranthe guttata HOM05D005224 ORTHO05D006372 2.0e-34 148.7 81 80.2
Hma1.2p1_1185F.1_g264980 Hydrangea macrophylla HOM05D005224 ORTHO05D006372 2.0e-34 148.7 74 89.2
A05p00270 Brassica napus HOM05D005224 ORTHO05D006372 2.6e-34 148.3 80 85.0
Cpa.g.sc19.280 Carica papaya HOM05D005224 ORTHO05D006372 2.6e-34 148.3 82 82.9
Aqoxy2G02950 Aquilegia oxysepala HOM05D005224 ORTHO05D006372 3.4e-34 147.9 75 90.7
Carub.0004s3041 Capsella rubella HOM05D005224 ORTHO05D006372 3.4e-34 147.9 80 83.8
EL10Ac3g05917 Beta vulgaris HOM05D005224 ORTHO05D006372 4.5e-34 147.5 74 87.8
BolC6t38010H Brassica oleracea HOM05D005224 ORTHO05D006372 4.5e-34 147.5 70 94.3
MBI18_g06871_MAGBIO Magnolia biondii HOM05D005224 ORTHO05D006372 4.5e-34 147.5 70 94.3
PGR042G0105 Punica granatum HOM05D005224 ORTHO05D006372 4.5e-34 147.5 83 83.1
AL5G45570 Arabidopsis lyrata HOM05D005224 ORTHO05D006372 5.9e-34 147.1 73 90.4
BcaB02g07318 Brassica carinata HOM05D005224 ORTHO05D006372 5.9e-34 147.1 82 82.9
Potri.002G204800 Populus trichocarpa HOM05D005224 ORTHO05D006372 5.9e-34 147.1 74 86.5
Actinidia32220 Actinidia chinensis HOM05D005224 ORTHO05D006372 7.7e-34 146.7 76 88.2
A07p26090 Brassica napus HOM05D005224 ORTHO05D006372 7.7e-34 146.7 70 92.9
CDE02G3260 Ceratophyllum demersum HOM05D005224 ORTHO05D006372 7.7e-34 146.7 84 81.0
PSO170G2085 Papaver somniferum HOM05D005224 ORTHO05D006372 7.7e-34 146.7 84 82.1
PSO210G2815 Papaver somniferum HOM05D005224 ORTHO05D006372 1.0e-33 146.4 74 87.8
C06p28410 Brassica napus HOM05D005224 ORTHO05D006372 1.3e-33 146.0 70 94.3
CiPaw.07G108200 Carya illinoinensis HOM05D005224 ORTHO05D006372 1.3e-33 146.0 84 83.3
PSO832G3231 Papaver somniferum HOM05D005224 ORTHO05D006372 1.3e-33 146.0 74 87.8
unitig_0.g663 Utricularia gibba HOM05D005224 ORTHO05D006372 1.3e-33 146.0 80 80.0
Aa31LG1G29010 Aethionema arabicum HOM05D005224 ORTHO05D006372 1.7e-33 145.6 73 89.0
Sc25g0004000 Simmondsia chinensis HOM05D005224 ORTHO05D006372 3.8e-33 144.4 102 70.6
ATR0796G245 Amborella trichopoda HOM05D005224 ORTHO05D006372 5.0e-33 144.1 76 88.2
Os08g0556600 Oryza sativa ssp. japonica HOM05D005224 ORTHO05D006372 5.0e-33 144.1 73 87.7
QL12p028550 Quercus lobata HOM05D005224 ORTHO05D006372 6.5e-33 143.7 84 79.8
Nitab4.5_0011375g0020 Nicotiana tabacum HOM05D005224 ORTHO05D006372 1.4e-32 142.5 69 89.9
Zm00001eb039670 Zea mays HOM05D005224 ORTHO05D006372 1.4e-32 142.5 74 89.2
Peaxi162Scf00589g00224 Petunia axillaris HOM05D005224 ORTHO05D006372 2.1e-31 138.7 65 92.3
COL.COLO4_23352 Corchorus olitorius HOM05D005224 ORTHO05D006372 2.7e-31 138.3 105 66.7
TAR370G0003 Trochodendron aralioides HOM05D005224 ORTHO05D006372 4.7e-31 137.5 63 95.2
Nitab4.5_0000805g0100 Nicotiana tabacum HOM05D005224 ORTHO05D006372 3.9e-30 134.4 61 95.1
Solyc11g005880.2 Solanum lycopersicum HOM05D005224 ORTHO05D006372 6.7e-30 133.7 62 93.5
Sopen11g001830 Solanum pennellii HOM05D005224 ORTHO05D006372 6.7e-30 133.7 62 93.5
ECA240G1836 Erigeron canadensis HOM05D002891 ORTHO05D003369 1.5e-29 132.5 68 88.2
PGSC0003DMG400028681 Solanum tuberosum HOM05D005224 ORTHO05D006372 2.0e-29 132.1 61 93.4
SalBow3G4056 Salvia bowleyana HOM05D005224 ORTHO05D006372 2.6e-29 131.7 94 68.1
CAN.G652.1 Capsicum annuum HOM05D005224 ORTHO05D006372 3.3e-29 131.3 60 93.3
SHI19781 Sapria himalayana HOM05D005224 ORTHO05D006372 1.7e-28 129.0 71 83.1
BcaC08g45239 Brassica carinata HOM05D005224 ORTHO05D006372 1.4e-27 125.9 57 94.7
TAR633G1838 Trochodendron aralioides HOM05D005224 ORTHO05D006372 3.2e-24 114.8 62 83.9
BraA07t30257Z Brassica rapa HOM05D005224 ORTHO05D006372 4.2e-24 114.4 50 96.0
HanXRQChr08g0223921 Helianthus annuus HOM05D005224 ORTHO05D006372 7.2e-24 113.6 50 96.0
Oeu054123.1 Olea europaea HOM05D005224 ORTHO05D006372 7.2e-24 113.6 50 94.0
HanXRQChr09g0263651 Helianthus annuus HOM05D005224 ORTHO05D006372 2.7e-23 111.7 50 94.0
MD02G1095800 Malus domestica HOM05D005224 ORTHO05D006372 6.7e-22 107.1 49 91.8
CBR_g52287 Chara braunii HOM05D005224 ORTHO05D006372 2.0e-21 105.5 80 62.5
AagrBONN_evm.TU.Sc2ySwM_344.1353 Anthoceros agrestis HOM05D005224 ORTHO05D006372 2.2e-20 102.1 81 55.6
Mapoly0155s0025 Marchantia polymorpha HOM05D005224 ORTHO05D006372 3.7e-20 101.3 75 64.0
CiPaw.08G095500 Carya illinoinensis HOM05D005224 ORTHO05D006372 5.3e-19 97.4 59 81.4
Pp3c7_20680 Physcomitrium patens HOM05D005224 ORTHO05D006372 2.0e-18 95.5 80 52.5
Pp3c11_13470 Physcomitrium patens HOM05D005224 ORTHO05D006372 3.5e-18 94.7 64 60.9
MCO16G429 Micromonas commoda HOM05D005224 ORTHO05D006372 5.7e-13 77.4 69 49.3
arahy.Tifrunner.gnm1.ann1.YEW5FF Arachis hypogaea HOM05D005224 ORTHO05D006372 2.1e-07 58.9 29 86.2
AUR62015428 Chenopodium quinoa HOM05D005224 ORTHO05D006372 1.8e-06 55.8 23 91.3


User provided reference genes

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