Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN27G2149 Fragaria x ananassa HOM05D005024 ORTHO05D006396 0.0e+00 1140.9 581 100.0
FAN15G2531 Fragaria x ananassa HOM05D005024 ORTHO05D006396 0.0e+00 1084.7 592 94.8
FAN20G2081 Fragaria x ananassa HOM05D005024 ORTHO05D006396 0.0e+00 1077.8 594 94.4
FvH4_2g36960 Fragaria vesca HOM05D005024 ORTHO05D006396 5.0e-297 1023.8 581 91.4
RcHm_v2.0_Chr6g0304801 Rosa chinensis HOM05D005024 ORTHO05D006396 4.8e-284 980.7 581 87.3
MD08G1046400 Malus domestica HOM05D005024 ORTHO05D006396 4.4e-245 851.3 584 77.1
MD15G1047400 Malus domestica HOM05D005024 ORTHO05D006396 4.6e-242 841.3 582 76.3
Prupe.1G401800 Prunus persica HOM05D005024 ORTHO05D006396 2.4e-219 765.8 582 71.5
Manes.16G087100 Manihot esculenta HOM05D005024 ORTHO05D006396 3.9e-217 758.4 581 68.3
TWI34G1336 Tripterygium wilfordii HOM05D005024 ORTHO05D006396 2.5e-216 755.7 578 68.2
Atru.chr7.1825 Acer truncatum HOM05D005024 ORTHO05D006396 3.7e-215 751.9 581 67.3
Potri.006G218800 Populus trichocarpa HOM05D005024 ORTHO05D006396 1.8e-214 749.6 581 67.6
Manes.03G056600 Manihot esculenta HOM05D005024 ORTHO05D006396 6.9e-214 747.7 581 67.0
Ciclev10007934m.g Citrus clementina HOM05D005024 ORTHO05D006396 8.4e-212 740.7 584 66.4
TWI63G0562 Tripterygium wilfordii HOM05D005024 ORTHO05D006396 2.1e-210 736.1 578 66.8
Eucgr.C00744 Eucalyptus grandis HOM05D005024 ORTHO05D006396 3.1e-206 722.2 584 64.7
Duzib150G0504 Durio zibethinus HOM05D005024 ORTHO05D006396 1.7e-204 716.5 585 63.6
CiPaw.15G090700 Carya illinoinensis HOM05D005024 ORTHO05D006396 2.9e-204 715.7 550 68.2
CSS0015942 Camellia sinensis var. sinensis HOM05D005024 ORTHO05D006396 1.9e-203 713.0 587 64.2
Duzib168G0917 Durio zibethinus HOM05D005024 ORTHO05D006396 9.3e-203 710.7 587 64.1
Nn8g38600 Nelumbo nucifera HOM05D005024 ORTHO05D006396 5.1e-201 704.9 588 63.3
Glyma.06G058100 Glycine max HOM05D005024 ORTHO05D006396 6.7e-201 704.5 581 63.7
ClCG08G009730 Citrullus lanatus HOM05D005024 ORTHO05D006396 1.5e-200 703.4 583 64.7
Gohir.D07G018500 Gossypium hirsutum HOM05D005024 ORTHO05D006396 4.3e-200 701.8 588 62.9
Gorai.001G019200 Gossypium raimondii HOM05D005024 ORTHO05D006396 1.6e-199 699.9 588 62.9
Gohir.A05G037800 Gossypium hirsutum HOM05D005024 ORTHO05D006396 7.6e-197 691.0 586 62.5
Gohir.A07G018700 Gossypium hirsutum HOM05D005024 ORTHO05D006396 2.2e-196 689.5 588 62.1
Sabra06G0168600 Salix brachista HOM05D005024 ORTHO05D006396 1.4e-195 686.8 583 63.8
arahy.Tifrunner.gnm1.ann1.JR430F Arachis hypogaea HOM05D005024 ORTHO05D006396 1.2e-194 683.7 582 62.9
MELO3C011496.2 Cucumis melo HOM05D005024 ORTHO05D006396 3.6e-194 682.2 583 61.9
Dinv41847 Davidia involucrata HOM05D005024 ORTHO05D006396 1.8e-193 679.9 538 66.5
arahy.Tifrunner.gnm1.ann1.Q4799Z Arachis hypogaea HOM05D005024 ORTHO05D006396 3.0e-193 679.1 582 62.7
VMungo1309G0309 Vigna mungo HOM05D005024 ORTHO05D006396 5.1e-193 678.3 581 60.8
Gorai.009G039800 Gossypium raimondii HOM05D005024 ORTHO05D006396 5.7e-192 674.9 577 62.4
Lj1g0011589 Lotus japonicus HOM05D005024 ORTHO05D006396 5.7e-192 674.9 585 62.4
Psat5g034920 Pisum sativum HOM05D005024 ORTHO05D006396 4.1e-190 668.7 581 60.9
Ca_15807_v3 Cicer arietinum L. HOM05D005024 ORTHO05D006396 7.7e-189 664.5 580 60.7
Cc08_g06760 Coffea canephora HOM05D005024 ORTHO05D006396 2.2e-188 662.9 590 61.2
Glyma.04G057500 Glycine max HOM05D005024 ORTHO05D006396 7.2e-187 657.9 548 63.5
Lalb_Chr08g0244691 Lupinus albus HOM05D005024 ORTHO05D006396 2.1e-186 656.4 550 64.7
GSVIVG01035495001 Vitis vinifera HOM05D005024 ORTHO05D006396 6.1e-186 654.8 449 73.3
Sed0007384 Sechium edule HOM05D005024 ORTHO05D006396 1.0e-185 654.1 627 57.1
COL.COLO4_21162 Corchorus olitorius HOM05D005024 ORTHO05D006396 6.7e-185 651.4 587 58.4
PGR142G1044 Punica granatum HOM05D005024 ORTHO05D006396 1.5e-184 650.2 585 60.3
Medtr3g105400 Medicago truncatula HOM05D005024 ORTHO05D006396 2.0e-181 639.8 571 60.2
PSO401G0002 Papaver somniferum HOM05D005024 ORTHO05D006396 3.8e-180 635.6 588 57.8
SalBow4G3344 Salvia bowleyana HOM05D005024 ORTHO05D006396 2.5e-179 632.9 596 59.9
PSO789G0001 Papaver somniferum HOM05D005024 ORTHO05D006396 1.2e-178 630.6 590 57.5
Lalb_Chr23g0268051 Lupinus albus HOM05D005024 ORTHO05D006396 1.6e-178 630.2 550 62.4
PSO724G1181 Papaver somniferum HOM05D005024 ORTHO05D006396 5.2e-177 625.2 589 56.9
MSTRG.11771 Avicennia marina HOM05D005024 ORTHO05D006396 8.8e-177 624.4 592 58.3
Gohir.D08G268300 Gossypium hirsutum HOM05D005024 ORTHO05D006396 4.4e-176 622.1 590 56.6
Gorai.004G286000 Gossypium raimondii HOM05D005024 ORTHO05D006396 9.7e-176 620.9 590 56.6
Phvul.009G083900 Phaseolus vulgaris HOM05D005024 ORTHO05D006396 1.8e-174 616.7 510 62.4
DCAR_001244 Daucus carota HOM05D005024 ORTHO05D006396 5.3e-174 615.1 586 56.7
Migut.A00327 Erythranthe guttata HOM05D005024 ORTHO05D006396 7.0e-174 614.8 582 58.1
CsaV3_6G031850 Cucumis sativus L. HOM05D005024 ORTHO05D006396 5.0e-172 608.6 585 56.9
Gohir.D05G039300 Gossypium hirsutum HOM05D005024 ORTHO05D006396 2.7e-170 602.8 577 57.7
Sc23g0006070 Simmondsia chinensis HOM05D005024 ORTHO05D006396 1.7e-167 593.6 588 56.5
Oeu045334.2 Olea europaea HOM05D005024 ORTHO05D006396 4.8e-167 592.0 631 55.5
CiPaw.05G157300 Carya illinoinensis HOM05D005024 ORTHO05D006396 1.1e-166 590.9 583 57.3
Nitab4.5_0004346g0050 Nicotiana tabacum HOM05D005024 ORTHO05D006396 7.0e-166 588.2 585 56.2
HanXRQChr03g0067181 Helianthus annuus HOM05D005024 ORTHO05D006396 1.6e-162 577.0 584 54.5
Aqoxy4G00037 Aquilegia oxysepala HOM05D005024 ORTHO05D006396 7.5e-160 568.2 533 57.0
Nitab4.5_0000508g0040 Nicotiana tabacum HOM05D005024 ORTHO05D006396 1.8e-158 563.5 577 55.5
Cpa.g.sc82.16 Carica papaya HOM05D005024 ORTHO05D006396 7.7e-157 558.1 415 67.5
THA.LOC104819895 Tarenaya hassleriana HOM05D005024 ORTHO05D006396 7.7e-157 558.1 582 52.9
Os09g0440200 Oryza sativa ssp. japonica HOM05D005024 ORTHO05D006396 6.1e-154 548.5 585 51.8
Sopen08g021170 Solanum pennellii HOM05D005024 ORTHO05D006396 2.6e-152 543.1 447 62.4
Zm00001eb314080 Zea mays HOM05D005024 ORTHO05D006396 3.4e-152 542.7 587 49.2
MBI19_g09934_MAGBIO Magnolia biondii HOM05D005024 ORTHO05D006396 1.8e-150 537.0 590 51.2
AT2G26270 Arabidopsis thaliana HOM05D005024 ORTHO05D006396 1.2e-149 534.3 578 51.9
MSTRG.25847 Avicennia marina HOM05D005024 ORTHO05D006396 1.2e-149 534.3 587 52.0
ECA240G2599 Erigeron canadensis HOM05D005024 ORTHO05D006396 2.3e-148 530.0 546 53.8
Thecc.09G065700 Theobroma cacao HOM05D005024 ORTHO05D006396 1.9e-147 526.9 403 66.0
Solyc08g067240.4 Solanum lycopersicum HOM05D005024 ORTHO05D006396 5.6e-147 525.4 584 51.7
Lj7C207G3 Lonicera japonica HOM05D005024 ORTHO05D006396 9.5e-147 524.6 413 66.3
SEGI_27832 Sequoiadendron giganteum HOM05D005024 ORTHO05D006396 2.1e-146 523.5 600 49.2
CARHR115110 Cardamine hirsuta HOM05D005024 ORTHO05D006396 3.0e-145 519.6 578 50.0
Aa31LG5G9530 Aethionema arabicum HOM05D005024 ORTHO05D006396 5.2e-145 518.8 588 51.2
BcaB06g28091 Brassica carinata HOM05D005024 ORTHO05D006396 5.2e-145 518.8 578 50.2
Lsat_1_v5_gn_7_59161 Lactuca sativa HOM05D005024 ORTHO05D006396 5.2e-145 518.8 589 51.3
Sp4g06550 Schrenkiella parvula HOM05D005024 ORTHO05D006396 2.0e-144 516.9 580 50.3
TAR624G0706 Trochodendron aralioides HOM05D005024 ORTHO05D006396 4.4e-144 515.8 488 58.2
A04p20310 Brassica napus HOM05D005024 ORTHO05D006396 9.2e-142 508.1 586 49.7
BraA04t17610Z Brassica rapa HOM05D005024 ORTHO05D006396 9.2e-142 508.1 586 49.7
BcaC02g08288 Brassica carinata HOM05D005024 ORTHO05D006396 1.5e-139 500.7 589 49.7
Gohir.A08G247100 Gossypium hirsutum HOM05D005024 ORTHO05D006396 7.3e-139 498.4 437 58.4
C04p56010 Brassica napus HOM05D005024 ORTHO05D006396 1.6e-138 497.3 587 49.1
BolC4t27134H Brassica oleracea HOM05D005024 ORTHO05D006396 1.6e-138 497.3 587 49.1
HanXRQChr05g0136401 Helianthus annuus HOM05D005024 ORTHO05D006396 4.4e-136 489.2 590 49.3
ECA236G2474 Erigeron canadensis HOM05D005024 ORTHO05D006396 1.9e-134 483.8 581 47.3
ATR0053G058 Amborella trichopoda HOM05D005024 ORTHO05D006396 1.9e-131 473.8 464 55.2
EL10Ac2g02404 Beta vulgaris HOM05D005024 ORTHO05D006396 2.5e-131 473.4 601 44.9
Peaxi162Scf00922g00210 Petunia axillaris HOM05D005024 ORTHO05D006396 3.1e-129 466.5 450 56.7
PGSC0003DMG400007379 Solanum tuberosum HOM05D005024 ORTHO05D006396 3.4e-128 463.0 345 67.5
THA.LOC104810953 Tarenaya hassleriana HOM05D005024 ORTHO05D006396 4.4e-128 462.6 585 46.7
AL5G21960 Arabidopsis lyrata HOM05D005024 ORTHO05D006396 3.4e-120 436.4 604 44.7
Ah.07g205360 Amaranthus hybridus HOM05D005024 ORTHO05D006396 1.7e-119 434.1 545 48.3
AT3G43930 Arabidopsis thaliana HOM05D005024 ORTHO05D006396 4.9e-119 432.6 583 45.1
Haze_18325 Corylus avellana HOM05D005024 ORTHO05D006396 2.7e-117 426.8 439 54.4
BcaB08g35274 Brassica carinata HOM05D005024 ORTHO05D006396 3.1e-113 413.3 549 45.7
Thhalv10001999m.g Eutrema salsugineum HOM05D005024 ORTHO05D006396 4.9e-111 406.0 413 52.8
SGA_v2.0_scaffold147G36313 Striga asiatica HOM05D005024 ORTHO05D006396 4.9e-111 406.0 514 49.2
Carub.0004s0614 Capsella rubella HOM05D005024 ORTHO05D006396 1.9e-110 404.1 414 53.4
HPP92_013024 Vanilla planifolia HOM05D005024 ORTHO05D006396 3.2e-110 403.3 434 49.8
Thhalv10011063m.g Eutrema salsugineum HOM05D005024 ORTHO05D006396 7.1e-110 402.1 581 43.7
SMO169G0310 Selaginella moellendorffii HOM05D005024 ORTHO05D006396 7.8e-109 398.7 583 41.5
Oeu030211.1 Olea europaea HOM05D005024 ORTHO05D006396 1.5e-107 394.4 506 46.6
CiPaw.05G156800 Carya illinoinensis HOM05D005024 ORTHO05D006396 3.1e-105 386.7 263 74.5
Pp3c6_19110 Physcomitrium patens HOM05D005024 ORTHO05D006396 7.6e-104 382.1 553 42.0
Rhsim06G0092200 Rhododendron simsii HOM05D005024 ORTHO05D006396 7.1e-102 375.6 511 44.4
AagrBONN_evm.TU.Sc2ySwM_228.2412 Anthoceros agrestis HOM05D005024 ORTHO05D006396 9.0e-97 358.6 538 38.3
TPR.G31221 Trifolium pratense HOM05D005024 ORTHO05D006396 1.4e-94 351.3 225 76.4
SHI28014 Sapria himalayana HOM05D005024 ORTHO05D006396 7.9e-93 345.5 424 47.6
Lsat_1_v5_gn_8_70380 Lactuca sativa HOM05D005024 ORTHO05D006396 3.3e-91 340.1 464 45.7
Pp3c3_23860 Physcomitrium patens HOM05D005024 ORTHO05D006396 1.3e-90 338.2 551 39.7
CBR_g17947 Chara braunii HOM05D005024 ORTHO05D006396 1.3e-87 328.2 611 34.9
AUR62020277 Chenopodium quinoa HOM05D005024 ORTHO05D006396 3.8e-87 326.6 372 49.2
AUR62037728 Chenopodium quinoa HOM05D005024 ORTHO05D006396 3.9e-84 316.6 348 49.7
Rhsim06G0128300 Rhododendron simsii HOM05D005024 ORTHO05D006396 1.3e-79 301.6 374 46.3
vmacro21130 Vaccinium macrocarpon HOM05D005024 ORTHO05D006396 6.1e-77 292.7 351 49.3
CDE07G0506 Ceratophyllum demersum HOM05D005024 ORTHO05D006396 2.2e-71 274.2 368 41.3
unitig_46.g18535 Utricularia gibba HOM05D005024 ORTHO05D006396 1.3e-55 221.9 391 40.2
unitig_46.g18534 Utricularia gibba HOM05D005024 ORTHO05D006396 4.5e-48 196.8 149 65.8
Carub.0005s0971 Capsella rubella HOM05D005024 ORTHO05D006396 9.4e-46 189.1 197 51.3
CAN.G348.11 Capsicum annuum HOM05D005024 ORTHO05D006396 8.8e-44 182.6 339 37.2
TPR.G3563 Trifolium pratense HOM05D005024 ORTHO05D006396 9.2e-33 146.0 179 49.2
TPR.G26130 Trifolium pratense HOM05D005024 ORTHO05D006396 2.3e-31 141.4 97 70.1
SMO336G0001 Selaginella moellendorffii HOM05D005024 ORTHO05D006396 1.2e-29 135.6 224 35.7
Cpa.g.sc82.17 Carica papaya HOM05D005024 ORTHO05D006396 3.9e-23 114.0 71 77.5
CBR_g899 Chara braunii HOM05D005024 ORTHO05D006396 8.0e-21 106.3 179 35.8
SHI08483 Sapria himalayana HOM05D005024 ORTHO05D006396 8.0e-21 106.3 249 31.7
AUR62020278 Chenopodium quinoa HOM05D005024 ORTHO05D006396 1.8e-20 105.1 68 73.5
GSVIVG01035496001 Vitis vinifera HOM05D005024 ORTHO05D006396 2.6e-19 101.3 66 78.8
TPR.G26129 Trifolium pratense HOM05D005024 ORTHO05D006396 3.4e-19 100.9 93 58.1
AUR62037727 Chenopodium quinoa HOM05D005024 ORTHO05D006396 4.4e-19 100.5 69 68.1
PSO198G0133 Papaver somniferum HOM05D005024 ORTHO05D006396 1.4e-17 95.5 119 47.1
Carub.0004s0613 Capsella rubella HOM05D005024 ORTHO05D006396 3.9e-15 87.4 114 50.0
ATR0053G014 Amborella trichopoda HOM05D005024 ORTHO05D006396 5.1e-15 87.0 50 82.0
Haze_18329 Corylus avellana HOM05D001982 ORTHO05D008035 3.3e-14 84.3 66 69.7
Gohir.D07G167350 Gossypium hirsutum HOM05D005024 ORTHO05D006396 3.6e-13 80.9 90 47.8
Gohir.A01G114950 Gossypium hirsutum HOM05D005024 ORTHO05D029835 1.8e-12 78.6 87 50.6
Gohir.A01G201250 Gossypium hirsutum HOM05D005024 ORTHO05D029835 1.8e-12 78.6 87 50.6
Gorai.003G122400 Gossypium raimondii HOM05D005024 ORTHO05D029835 1.8e-12 78.6 87 50.6
QL02p017308 Quercus lobata HOM05D005024 ORTHO05D006396 5.2e-12 77.0 101 46.5
Gohir.D07G161533 Gossypium hirsutum HOM05D005024 ORTHO05D029835 1.2e-11 75.9 87 49.4
SGA_v2.0_scaffold354G49742 Striga asiatica HOM05D001245 ORTHO05D004475 7.3e-06 56.6 200 25.5


User provided reference genes

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