Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN27G2110 Fragaria x ananassa HOM05D004702 ORTHO05D005505 6.8e-276 953.4 476 100.0
FAN24G1074 Fragaria x ananassa HOM05D004702 ORTHO05D005505 1.4e-268 929.1 476 97.3
FAN15G1938 Fragaria x ananassa HOM05D004702 ORTHO05D005505 1.8e-268 928.7 476 97.5
FAN20G1472 Fragaria x ananassa HOM05D004702 ORTHO05D005505 6.8e-268 926.8 476 97.7
FvH4_2g33990 Fragaria vesca HOM05D004702 ORTHO05D005505 1.2e-267 926.0 476 96.8
RcHm_v2.0_Chr6g0308391 Rosa chinensis HOM05D004702 ORTHO05D005505 3.4e-243 844.7 485 88.9
Prupe.1G431800 Prunus persica HOM05D004702 ORTHO05D005505 6.3e-173 611.3 471 69.4
MD08G1095800 Malus domestica HOM05D004702 ORTHO05D005505 3.8e-154 548.9 481 63.8
MD15G1078600 Malus domestica HOM05D004702 ORTHO05D005505 3.3e-153 545.8 458 64.2
CANSAT25G0849 Cannabis sativa HOM05D004702 ORTHO05D005505 2.2e-149 533.1 479 64.3
Ciclev10001048m.g Citrus clementina HOM05D004702 ORTHO05D005505 1.9e-145 520.0 473 61.7
Thecc.08G002800 Theobroma cacao HOM05D004702 ORTHO05D005505 2.0e-142 510.0 479 61.0
Manes.18G040500 Manihot esculenta HOM05D004702 ORTHO05D005505 7.5e-142 508.1 476 60.7
Gorai.009G214400 Gossypium raimondii HOM05D004702 ORTHO05D005505 9.8e-142 507.7 481 60.5
Manes.05G176200 Manihot esculenta HOM05D004702 ORTHO05D005505 1.3e-141 507.3 482 61.4
Gohir.D05G207800 Gossypium hirsutum HOM05D004702 ORTHO05D005505 2.9e-141 506.1 481 60.3
Potri.014G025000 Populus trichocarpa HOM05D004702 ORTHO05D005505 1.1e-140 504.2 461 62.3
Dinv35933 Davidia involucrata HOM05D004702 ORTHO05D005505 5.4e-140 501.9 464 60.6
Duzib041G0633 Durio zibethinus HOM05D004702 ORTHO05D005505 2.0e-139 500.0 484 59.3
Duzib093G1440 Durio zibethinus HOM05D004702 ORTHO05D005505 2.7e-139 499.6 479 60.3
Potri.002G123800 Populus trichocarpa HOM05D004702 ORTHO05D005505 3.5e-139 499.2 482 60.0
TWI56G0769 Tripterygium wilfordii HOM05D004702 ORTHO05D005505 7.8e-139 498.0 435 62.3
Gohir.A05G204600 Gossypium hirsutum HOM05D004702 ORTHO05D005505 5.0e-138 495.4 481 59.5
Eucgr.F00191 Eucalyptus grandis HOM05D004702 ORTHO05D005505 1.9e-137 493.4 447 62.9
Sabra02G0097200 Salix brachista HOM05D004702 ORTHO05D005505 1.9e-137 493.4 468 59.4
COL.COLO4_03654 Corchorus olitorius HOM05D004702 ORTHO05D005505 1.8e-135 486.9 497 57.5
TAR376G0323 Trochodendron aralioides HOM05D004702 ORTHO05D005505 4.4e-134 482.3 411 64.5
Sabra14G0017000 Salix brachista HOM05D004702 ORTHO05D005505 9.8e-134 481.1 468 59.6
TAR381G0178 Trochodendron aralioides HOM05D004702 ORTHO05D005505 8.3e-133 478.0 449 59.0
CSS0001222 Camellia sinensis var. sinensis HOM05D004702 ORTHO05D005505 3.2e-132 476.1 463 59.0
Cpa.g.sc21.167 Carica papaya HOM05D004702 ORTHO05D005505 9.2e-132 474.6 479 57.4
Cc10_g04740 Coffea canephora HOM05D004702 ORTHO05D005505 6.0e-131 471.9 487 56.5
QL02p004185 Quercus lobata HOM05D004702 ORTHO05D005505 1.2e-128 464.2 479 56.8
Hma1.2p1_0360F.1_g135770 Hydrangea macrophylla HOM05D004702 ORTHO05D005505 4.7e-128 462.2 480 55.4
Oeu009775.1 Olea europaea HOM05D004702 ORTHO05D005505 2.3e-127 459.9 471 55.6
VMungo1309G0408 Vigna mungo HOM05D004702 ORTHO05D005505 1.5e-126 457.2 499 54.7
Nitab4.5_0000287g0020 Nicotiana tabacum HOM05D004702 ORTHO05D005505 1.3e-125 454.1 453 57.6
Oeu054792.1 Olea europaea HOM05D004702 ORTHO05D005505 2.9e-125 453.0 479 55.3
Atru.BG.237.p Acer truncatum HOM05D004702 ORTHO05D005505 3.8e-125 452.6 384 64.3
Dinv39282 Davidia involucrata HOM05D004702 ORTHO05D005505 4.9e-125 452.2 437 57.9
Nitab4.5_0005129g0020 Nicotiana tabacum HOM05D004702 ORTHO05D005505 2.4e-124 449.9 453 57.2
arahy.Tifrunner.gnm1.ann1.L8L5ZS Arachis hypogaea HOM05D004702 ORTHO05D005505 2.1e-123 446.8 510 52.5
Phvul.009G067000 Phaseolus vulgaris HOM05D004702 ORTHO05D005505 2.7e-123 446.4 499 54.3
Actinidia22651 Actinidia chinensis HOM05D004702 ORTHO05D005505 4.6e-123 445.7 491 54.6
arahy.Tifrunner.gnm1.ann1.WJS3XD Arachis hypogaea HOM05D004702 ORTHO05D005505 6.0e-123 445.3 513 52.8
CAN.G1030.31 Capsicum annuum HOM05D004702 ORTHO05D005505 1.0e-122 444.5 492 52.2
CiPaw.15G053800 Carya illinoinensis HOM05D004702 ORTHO05D005505 1.7e-122 443.7 482 55.2
Glyma.17G239800 Glycine max HOM05D004702 ORTHO05D005505 2.3e-122 443.4 494 55.1
Lj4C62G3 Lonicera japonica HOM05D004702 ORTHO05D005505 2.3e-122 443.4 432 58.1
DCAR_012789 Daucus carota HOM05D004702 ORTHO05D005505 3.9e-122 442.6 431 58.2
Glyma.06G042300 Glycine max HOM05D004702 ORTHO05D005505 3.9e-122 442.6 503 53.5
Gorai.010G022200 Gossypium raimondii HOM05D004702 ORTHO05D005505 1.1e-121 441.0 407 59.5
Gohir.D06G019009 Gossypium hirsutum HOM05D004702 ORTHO05D005505 2.5e-121 439.9 407 59.2
PGR083G2110 Punica granatum HOM05D004702 ORTHO05D005505 7.3e-121 438.3 503 53.7
Gohir.A06G020700 Gossypium hirsutum HOM05D004702 ORTHO05D005505 1.2e-120 437.6 407 59.0
VMungo0647G1506 Vigna mungo HOM05D004702 ORTHO05D005505 6.2e-120 435.3 487 53.2
Lsat_1_v5_gn_1_22040 Lactuca sativa HOM05D004702 ORTHO05D005505 4.0e-119 432.6 489 51.7
CsaV3_4G034620 Cucumis sativus L. HOM05D004702 ORTHO05D005505 2.6e-118 429.9 480 52.7
Actinidia01089 Actinidia chinensis HOM05D004702 ORTHO05D005505 7.6e-118 428.3 453 56.3
TPR.G24175 Trifolium pratense HOM05D004702 ORTHO05D005505 7.6e-118 428.3 500 52.4
Medtr3g102120 Medicago truncatula HOM05D004702 ORTHO05D005505 3.8e-117 426.0 480 52.5
Psat0s3591g0040 Pisum sativum HOM05D004702 ORTHO05D005505 6.4e-117 425.2 490 50.8
Lj1g0008884 Lotus japonicus HOM05D004702 ORTHO05D005505 1.9e-116 423.7 483 53.4
MELO3C016778.2 Cucumis melo HOM05D004702 ORTHO05D005505 7.1e-116 421.8 480 53.1
PGSC0003DMG400008008 Solanum tuberosum HOM05D004702 ORTHO05D005505 7.8e-115 418.3 451 55.2
Ca_15936_v3 Cicer arietinum L. HOM05D004702 ORTHO05D005505 6.6e-114 415.2 489 51.9
vmacro21496 Vaccinium macrocarpon HOM05D004702 ORTHO05D005505 1.9e-113 413.7 452 53.1
ECA247G0009 Erigeron canadensis HOM05D004702 ORTHO05D005505 2.5e-113 413.3 497 50.7
Aqoxy6G01249 Aquilegia oxysepala HOM05D004702 ORTHO05D005505 3.3e-113 412.9 475 49.3
ClCG05G020100 Citrullus lanatus HOM05D004702 ORTHO05D005505 1.4e-111 407.5 479 51.1
Solyc04g078630.3 Solanum lycopersicum HOM05D004702 ORTHO05D005505 5.3e-111 405.6 465 51.6
ECA232G1346 Erigeron canadensis HOM05D004702 ORTHO05D005505 4.5e-110 402.5 388 55.4
SalBow7G0327 Salvia bowleyana HOM05D004702 ORTHO05D005505 7.6e-110 401.7 482 49.8
Haze_18055 Corylus avellana HOM05D004702 ORTHO05D005505 2.2e-109 400.2 469 52.2
DCAR_019426 Daucus carota HOM05D004702 ORTHO05D005505 2.2e-109 400.2 424 54.7
Cfa009956 Carpinus fangiana HOM05D004702 ORTHO05D005505 3.8e-109 399.4 479 52.4
Medtr1g019040 Medicago truncatula HOM05D004702 ORTHO05D005505 3.8e-109 399.4 479 51.4
TPR.G3800 Trifolium pratense HOM05D004702 ORTHO05D005505 4.9e-109 399.1 491 50.1
PSO675G4695 Papaver somniferum HOM05D004702 ORTHO05D005505 1.1e-108 397.9 483 48.4
Glyma.14G085000 Glycine max HOM05D004702 ORTHO05D005505 5.4e-108 395.6 470 50.6
Sopen04g032210 Solanum pennellii HOM05D004702 ORTHO05D005505 9.3e-108 394.8 414 54.8
HanXRQChr10g0286851 Helianthus annuus HOM05D004702 ORTHO05D005505 1.2e-107 394.4 487 48.7
Haze_18053 Corylus avellana HOM05D004702 ORTHO05D005505 1.6e-107 394.0 472 51.5
HanXRQChr09g0267191 Helianthus annuus HOM05D004702 ORTHO05D005505 2.1e-107 393.7 418 54.3
TAR625G0654 Trochodendron aralioides HOM05D004702 ORTHO05D005505 1.8e-106 390.6 402 55.2
MSTRG.1063 Avicennia marina HOM05D004702 ORTHO05D005505 2.3e-106 390.2 440 51.6
Nn5g30368 Nelumbo nucifera HOM05D004702 ORTHO05D005505 2.3e-106 390.2 432 53.7
PSO541G5103 Papaver somniferum HOM05D004702 ORTHO05D005505 3.0e-106 389.8 483 47.0
Peaxi162Scf00882g00017 Petunia axillaris HOM05D004702 ORTHO05D005505 1.1e-103 381.3 457 50.8
HanXRQChr04g0103941 Helianthus annuus HOM05D004702 ORTHO05D005505 1.2e-102 377.9 488 47.5
Sc02g0007400 Simmondsia chinensis HOM05D004702 ORTHO05D005505 2.6e-102 376.7 388 54.9
Phvul.001G024000 Phaseolus vulgaris HOM05D004702 ORTHO05D005505 1.3e-101 374.4 350 59.4
Lalb_Chr14g0368541 Lupinus albus HOM05D004702 ORTHO05D005505 6.4e-101 372.1 469 48.6
Lj5g0017670 Lotus japonicus HOM05D004702 ORTHO05D005505 9.3e-100 368.2 413 52.8
Sed0014061 Sechium edule HOM05D004702 ORTHO05D005505 1.2e-99 367.9 465 48.4
MBI16_g04313_MAGBIO Magnolia biondii HOM05D004702 ORTHO05D005505 4.6e-99 365.9 493 47.5
HanXRQChr16g0509011 Helianthus annuus HOM05D004702 ORTHO05D005505 3.0e-98 363.2 387 53.2
THA.LOC104801428 Tarenaya hassleriana HOM05D004702 ORTHO05D005505 3.4e-94 349.7 497 44.3
AUR62035465 Chenopodium quinoa HOM05D004702 ORTHO05D005505 7.6e-94 348.6 433 46.4
Migut.C00543 Erythranthe guttata HOM05D004702 ORTHO05D005505 2.9e-93 346.7 494 43.7
Ah.05g167300 Amaranthus hybridus HOM05D004702 ORTHO05D005505 3.9e-90 336.3 426 45.5
EL10As7g23762 Beta vulgaris HOM05D004702 ORTHO05D005505 6.7e-90 335.5 402 48.5
Hund05336 Selenicereus undatus HOM05D004702 ORTHO05D005505 7.4e-89 332.0 412 48.3
SGA_v2.0_scaffold14G06974 Striga asiatica HOM05D004702 ORTHO05D005505 2.1e-88 330.5 480 44.0
Rhsim06G0053300 Rhododendron simsii HOM05D004702 ORTHO05D005505 2.6e-86 323.6 381 50.1
Haze_18006 Corylus avellana HOM05D004702 ORTHO05D005505 5.0e-85 319.3 394 50.8
AL6G41200 Arabidopsis lyrata HOM05D004702 ORTHO05D005505 6.5e-85 318.9 497 42.3
Ah.11g043030 Amaranthus hybridus HOM05D004702 ORTHO05D005505 2.5e-84 317.0 397 46.3
Carub.0006s2627 Capsella rubella HOM05D004702 ORTHO05D005505 1.6e-83 314.3 485 43.3
BcaB01g01331 Brassica carinata HOM05D004702 ORTHO05D005505 2.3e-82 310.5 482 41.7
Aa31LG3G14060 Aethionema arabicum HOM05D004702 ORTHO05D005505 3.0e-82 310.1 491 40.5
Ca_13276_v3 Cicer arietinum L. HOM05D004702 ORTHO05D005505 8.7e-82 308.5 293 59.0
Thhalv10028638m.g Eutrema salsugineum HOM05D004702 ORTHO05D005505 1.1e-81 308.1 506 43.1
BraSC37t46123Z Brassica rapa HOM05D004702 ORTHO05D005505 3.1e-79 300.1 491 41.8
A10p08810 Brassica napus HOM05D004702 ORTHO05D005505 4.1e-79 299.7 491 41.8
GSVIVG01009450001 Vitis vinifera HOM05D004702 ORTHO05D005505 7.7e-78 295.4 201 73.1
Atru.chr13.733 Acer truncatum HOM05D004702 ORTHO05D005505 6.5e-77 292.4 204 72.5
Lalb_Chr23g0267231 Lupinus albus HOM05D004702 ORTHO05D005505 1.9e-76 290.8 231 62.8
SGA_v2.0_scaffold197G41020 Striga asiatica HOM05D004702 ORTHO05D005505 3.0e-74 283.5 465 40.2
Migut.N02734 Erythranthe guttata HOM05D004702 ORTHO05D005505 1.5e-73 281.2 345 44.3
unitig_8.g5031 Utricularia gibba HOM05D004702 ORTHO05D005505 1.5e-73 281.2 471 39.9
ATR0762G037 Amborella trichopoda HOM05D004702 ORTHO05D005505 1.7e-72 277.7 425 40.7
C09p38410 Brassica napus HOM05D004702 ORTHO05D005505 6.3e-72 275.8 481 38.7
CDE01G0679 Ceratophyllum demersum HOM05D004702 ORTHO05D005505 3.1e-71 273.5 393 40.2
SalBow6G7027 Salvia bowleyana HOM05D004702 ORTHO05D005505 4.5e-70 269.6 451 39.7
SalBow6G2833 Salvia bowleyana HOM05D004702 ORTHO05D005505 7.7e-70 268.9 451 39.7
Zm00001eb247120 Zea mays HOM05D004702 ORTHO05D005505 1.3e-69 268.1 496 35.5
HPP92_017369 Vanilla planifolia HOM05D004702 ORTHO05D005505 6.5e-69 265.8 394 40.6
Lsat_1_v5_gn_4_127260 Lactuca sativa HOM05D004702 ORTHO05D005505 7.7e-62 242.3 201 60.2
SEGI_05734 Sequoiadendron giganteum HOM05D004702 ORTHO05D005505 3.8e-61 240.0 413 40.9
SEGI_36308 Sequoiadendron giganteum HOM05D004702 ORTHO05D005505 4.2e-60 236.5 413 38.3
SEGI_03871 Sequoiadendron giganteum HOM05D004702 ORTHO05D005505 2.8e-56 223.8 405 39.0
SEGI_19446 Sequoiadendron giganteum HOM05D004702 ORTHO05D005505 1.1e-55 221.9 407 36.9
HPP92_010365 Vanilla planifolia HOM05D004702 ORTHO05D005505 4.5e-54 216.5 481 34.9
Pp3c15_17100 Physcomitrium patens HOM05D004702 ORTHO05D005505 7.7e-54 215.7 425 36.9
AagrBONN_evm.TU.Sc2ySwM_228.394 Anthoceros agrestis HOM05D004702 ORTHO05D005505 1.3e-53 214.9 433 35.6
SEGI_12847 Sequoiadendron giganteum HOM05D004702 ORTHO05D005505 1.9e-52 211.1 390 36.9
Psat0s3398g0240 Pisum sativum HOM05D004702 ORTHO05D005505 1.2e-51 208.4 160 64.4
arahy.Tifrunner.gnm1.ann1.7E6QIB Arachis hypogaea HOM05D004702 ORTHO05D005505 1.8e-47 194.5 150 64.7
arahy.Tifrunner.gnm1.ann1.7V26PZ Arachis hypogaea HOM05D004702 ORTHO05D005505 1.8e-47 194.5 150 64.7
CARHR264230 Cardamine hirsuta HOM05D004702 ORTHO05D005505 2.1e-43 181.0 171 55.0
AT4G06536 Arabidopsis thaliana HOM05D004702 ORTHO05D005505 1.2e-41 175.3 172 53.5
SMO145G0126 Selaginella moellendorffii HOM05D004702 ORTHO05D005505 6.3e-40 169.5 441 30.6
Sp6g10680 Schrenkiella parvula HOM05D004702 ORTHO05D005505 9.2e-39 165.6 167 51.5
Psat0s3398g0080 Pisum sativum HOM05D004702 ORTHO05D005505 2.3e-37 161.0 109 68.8
SMO112G0032 Selaginella moellendorffii HOM05D004702 ORTHO05D005505 2.8e-35 154.1 380 31.8
Nn7g37290 Nelumbo nucifera HOM05D004702 ORTHO05D005505 1.0e-34 152.1 147 52.4
AT4G06534 Arabidopsis thaliana HOM05D004702 ORTHO05D005505 2.0e-33 147.9 329 35.0
AUR62044709 Chenopodium quinoa HOM05D004702 ORTHO05D005505 2.2e-32 144.4 294 36.7
AUR62044714 Chenopodium quinoa HOM05D004702 ORTHO05D005505 2.2e-32 144.4 294 36.7
Os02g0614700 Oryza sativa ssp. japonica HOM05D004702 ORTHO05D005505 2.2e-32 144.4 167 45.5
Sp6g10670 Schrenkiella parvula HOM05D004702 ORTHO05D005505 6.0e-30 136.3 331 35.6
CBR_g733 Chara braunii HOM05D004702 ORTHO05D005505 1.9e-20 104.8 257 30.0
Glyma.15G095100 Glycine max HOM05D004702 ORTHO05D005505 7.8e-14 82.8 110 47.3
SMO364G0277 Selaginella moellendorffii HOM05D051657 ORTHO05D005505 8.9e-10 69.3 124 35.5
SEGI_40713 Sequoiadendron giganteum HOM05D004702 ORTHO05D005505 3.8e-08 63.9 110 30.9


User provided reference genes

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