Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN27G2077 Fragaria x ananassa HOM05D004539 ORTHO05D005482 3.1e-250 868.2 509 100.0
FAN15G3183 Fragaria x ananassa HOM05D004539 ORTHO05D005482 4.7e-243 844.3 509 97.4
FAN20G1687 Fragaria x ananassa HOM05D004539 ORTHO05D005482 8.1e-243 843.6 509 96.1
FvH4_2g39030 Fragaria vesca HOM05D004539 ORTHO05D005482 1.2e-238 829.7 509 95.1
RcHm_v2.0_Chr6g0302141 Rosa chinensis HOM05D004539 ORTHO05D005482 2.3e-213 745.7 510 86.1
FvH4_7g07450 Fragaria vesca HOM05D004539 ORTHO05D005482 1.3e-155 553.9 382 89.0
FAN10G3704 Fragaria x ananassa HOM05D004539 ORTHO05D005482 4.6e-137 492.3 380 81.8
Prupe.1G370700 Prunus persica HOM05D004539 ORTHO05D005482 2.0e-132 476.9 548 54.2
MD08G1018100 Malus domestica HOM05D004539 ORTHO05D005482 1.6e-129 467.2 554 57.0
MD15G1017400 Malus domestica HOM05D004539 ORTHO05D005482 1.6e-129 467.2 552 56.9
CANSAT54G2989 Cannabis sativa HOM05D004539 ORTHO05D005482 6.4e-115 418.7 554 49.5
Atru.chr13.359 Acer truncatum HOM05D004539 ORTHO05D005482 7.1e-114 415.2 540 53.0
Thecc.04G277100 Theobroma cacao HOM05D004539 ORTHO05D005482 1.3e-112 411.0 553 52.4
CiPaw.08G062700 Carya illinoinensis HOM05D004539 ORTHO05D005482 1.7e-112 410.6 556 50.7
Ciclev10004791m.g Citrus clementina HOM05D004539 ORTHO05D005482 4.3e-111 406.0 526 54.0
Duzib192G0399 Durio zibethinus HOM05D004539 ORTHO05D005482 5.6e-111 405.6 558 47.5
Potri.005G234800 Populus trichocarpa HOM05D004539 ORTHO05D005482 1.6e-110 404.1 567 51.5
Cfa013903 Carpinus fangiana HOM05D004539 ORTHO05D005482 4.8e-110 402.5 543 54.3
Gohir.D07G219000 Gossypium hirsutum HOM05D004539 ORTHO05D005482 1.4e-109 401.0 557 47.4
Gorai.001G253500 Gossypium raimondii HOM05D004539 ORTHO05D005482 2.4e-109 400.2 557 47.4
DCAR_013849 Daucus carota HOM05D004539 ORTHO05D005482 6.9e-109 398.7 547 47.7
Haze_22584 Corylus avellana HOM05D004539 ORTHO05D005482 1.2e-108 397.9 529 55.6
Lalb_Chr03g0033831 Lupinus albus HOM05D004539 ORTHO05D005482 2.0e-108 397.1 528 47.7
Sabra05G0181000 Salix brachista HOM05D004539 ORTHO05D005482 2.6e-108 396.7 560 51.2
Gohir.A07G212900 Gossypium hirsutum HOM05D004539 ORTHO05D005482 5.8e-108 395.6 557 47.2
COL.COLO4_16338 Corchorus olitorius HOM05D004539 ORTHO05D005482 9.9e-108 394.8 552 46.4
Rhsim06G0026400 Rhododendron simsii HOM05D004539 ORTHO05D005482 9.9e-108 394.8 558 50.5
COL.COLO4_38586 Corchorus olitorius HOM05D004539 ORTHO05D005482 1.3e-107 394.4 551 45.9
TAR629G0090 Trochodendron aralioides HOM05D004539 ORTHO05D005482 4.9e-107 392.5 572 47.2
Dinv39486 Davidia involucrata HOM05D004539 ORTHO05D005482 5.4e-106 389.0 553 48.8
Phvul.003G186400 Phaseolus vulgaris HOM05D004539 ORTHO05D005482 5.4e-106 389.0 544 51.5
Lj1g0010849 Lotus japonicus HOM05D004539 ORTHO05D005482 1.2e-105 387.9 542 48.7
Psat7g263720 Pisum sativum HOM05D004539 ORTHO05D005482 1.2e-105 387.9 537 52.0
Glyma.05G023000 Glycine max HOM05D004539 ORTHO05D005482 2.1e-105 387.1 544 50.2
Manes.05G152500 Manihot esculenta HOM05D004539 ORTHO05D005482 2.1e-105 387.1 560 47.7
Sed0008828 Sechium edule HOM05D004539 ORTHO05D005482 4.6e-105 386.0 546 50.2
Sabra02G0022100 Salix brachista HOM05D004539 ORTHO05D005482 7.9e-105 385.2 562 49.5
FAN22G0834 Fragaria x ananassa HOM05D004539 ORTHO05D005482 1.8e-104 384.0 269 78.8
vmacro21700 Vaccinium macrocarpon HOM05D004539 ORTHO05D005482 1.8e-104 384.0 560 50.9
GSVIVG01009825001 Vitis vinifera HOM05D004539 ORTHO05D005482 6.7e-104 382.1 528 50.4
VMungo1215G0403 Vigna mungo HOM05D004539 ORTHO05D005482 8.7e-104 381.7 544 51.3
arahy.Tifrunner.gnm1.ann1.D3BLAG Arachis hypogaea HOM05D004539 ORTHO05D005482 1.9e-103 380.6 567 47.4
Cpa.g.sc147.12 Carica papaya HOM05D004539 ORTHO05D005482 5.6e-103 379.0 567 44.8
Glyma.17G076700 Glycine max HOM05D004539 ORTHO05D005482 8.1e-102 375.2 542 50.4
Cpa.g.sc140.19 Carica papaya HOM05D004539 ORTHO05D005482 1.1e-101 374.8 567 49.0
TWI60G0405 Tripterygium wilfordii HOM05D004539 ORTHO05D005482 1.4e-101 374.4 567 45.7
Sed0017053 Sechium edule HOM05D004539 ORTHO05D005482 4.0e-101 372.9 558 48.6
Dinv31810 Davidia involucrata HOM05D004539 ORTHO05D005482 5.3e-101 372.5 551 44.6
Ciclev10011488m.g Citrus clementina HOM05D004539 ORTHO05D005482 6.9e-101 372.1 515 51.3
TPR.G5561 Trifolium pratense HOM05D004539 ORTHO05D005482 1.5e-100 370.9 532 50.6
PGR031G2058 Punica granatum HOM05D004539 ORTHO05D005482 2.6e-100 370.2 542 46.9
Medtr4g022890 Medicago truncatula HOM05D004539 ORTHO05D005482 9.9e-100 368.2 534 53.7
Hma1.2p1_0773F.1_g216150 Hydrangea macrophylla HOM05D004539 ORTHO05D005482 4.9e-99 365.9 553 47.2
arahy.Tifrunner.gnm1.ann1.ME0SR7 Arachis hypogaea HOM05D004539 ORTHO05D005482 1.9e-98 364.0 549 45.4
Ca_11952_v3 Cicer arietinum L. HOM05D004539 ORTHO05D005482 3.2e-98 363.2 549 50.5
Thhalv10010315m.g Eutrema salsugineum HOM05D004539 ORTHO05D005482 4.2e-98 362.8 526 47.9
Lj4A486G10 Lonicera japonica HOM05D004539 ORTHO05D005482 5.5e-98 362.5 601 44.1
SalBow6G1219 Salvia bowleyana HOM05D004539 ORTHO05D005482 3.5e-97 359.8 533 45.8
CsaV3_3G001200 Cucumis sativus L. HOM05D004539 ORTHO05D005482 7.9e-97 358.6 556 49.3
CAN.G851.13 Capsicum annuum HOM05D004539 ORTHO05D005482 2.3e-96 357.1 535 51.2
SGA_v2.0_scaffold4G01895 Striga asiatica HOM05D004539 ORTHO05D005482 8.7e-96 355.1 541 44.2
SGA_v2.0_scaffold92G28288 Striga asiatica HOM05D004539 ORTHO05D005482 8.7e-96 355.1 541 44.2
AUR62034567 Chenopodium quinoa HOM05D004539 ORTHO05D005482 5.6e-95 352.4 532 49.4
AUR62042221 Chenopodium quinoa HOM05D004539 ORTHO05D005482 5.6e-95 352.4 532 49.4
Aa31LG4G18400 Aethionema arabicum HOM05D004539 ORTHO05D005482 9.6e-95 351.7 532 49.2
Nitab4.5_0012730g0010 Nicotiana tabacum HOM05D004539 ORTHO05D005482 1.3e-94 351.3 541 49.4
Lj4C484T3 Lonicera japonica HOM05D004539 ORTHO05D005482 2.8e-94 350.1 501 46.3
Nn6g32243 Nelumbo nucifera HOM05D004539 ORTHO05D005482 2.8e-94 350.1 566 41.5
Ca_22519_v3 Cicer arietinum L. HOM05D004539 ORTHO05D005482 3.7e-94 349.7 543 51.4
Migut.C00791 Erythranthe guttata HOM05D004539 ORTHO05D005482 4.8e-94 349.4 529 44.0
MELO3C013810.2 Cucumis melo HOM05D004539 ORTHO05D005482 8.2e-94 348.6 550 47.8
Hund17219 Selenicereus undatus HOM05D004539 ORTHO05D005482 1.1e-93 348.2 552 44.0
THA.LOC104813189 Tarenaya hassleriana HOM05D004539 ORTHO05D005482 4.0e-93 346.3 545 46.4
Oeu036929.3 Olea europaea HOM05D004539 ORTHO05D005482 9.0e-93 345.1 568 41.9
AUR62014430 Chenopodium quinoa HOM05D004539 ORTHO05D005482 1.2e-92 344.7 531 49.5
Cc10_g02110 Coffea canephora HOM05D004539 ORTHO05D005482 1.2e-92 344.7 545 45.1
ClCG05G018590 Citrullus lanatus HOM05D004539 ORTHO05D005482 2.0e-92 344.0 615 43.9
Lj2g0012026 Lotus japonicus HOM05D004539 ORTHO05D005482 2.6e-92 343.6 547 47.2
EL10Ac1g00555 Beta vulgaris HOM05D004539 ORTHO05D005482 1.7e-91 340.9 524 49.4
TAR628G0025 Trochodendron aralioides HOM05D004539 ORTHO05D005482 1.7e-91 340.9 573 44.0
Sp5g12110 Schrenkiella parvula HOM05D004539 ORTHO05D005482 1.4e-90 337.8 526 47.1
Carub.0005s1635 Capsella rubella HOM05D004539 ORTHO05D005482 1.9e-90 337.4 519 46.6
Solyc04g081030.3 Solanum lycopersicum HOM05D004539 ORTHO05D005482 2.5e-90 337.0 469 47.3
FAN06G2453 Fragaria x ananassa HOM05D004539 ORTHO05D005482 4.2e-90 336.3 242 84.7
Hund26867 Selenicereus undatus HOM05D004539 ORTHO05D005482 5.5e-90 335.9 549 41.0
Sc02g0002900 Simmondsia chinensis HOM05D004539 ORTHO05D005482 5.5e-90 335.9 550 45.3
AL5G30050 Arabidopsis lyrata HOM05D004539 ORTHO05D005482 9.3e-90 335.1 538 42.0
A03p47640 Brassica napus HOM05D004539 ORTHO05D005482 9.3e-90 335.1 518 47.5
AT3G49990 Arabidopsis thaliana HOM05D004539 ORTHO05D005482 3.5e-89 333.2 532 45.1
BcaC06g33116 Brassica carinata HOM05D004539 ORTHO05D005482 6.0e-89 332.4 529 47.1
PSO675G8916 Papaver somniferum HOM05D004539 ORTHO05D005482 1.0e-88 331.6 541 45.3
PSO541G3108 Papaver somniferum HOM05D004539 ORTHO05D005482 1.3e-88 331.3 544 45.4
BraA03t13876Z Brassica rapa HOM05D004539 ORTHO05D005482 2.3e-88 330.5 520 46.9
BolC7t45082H Brassica oleracea HOM05D004539 ORTHO05D005482 3.9e-88 329.7 519 47.2
ECA232G1826 Erigeron canadensis HOM05D004539 ORTHO05D005482 6.7e-88 328.9 524 46.4
MSTRG.25219 Avicennia marina HOM05D004539 ORTHO05D005482 1.1e-87 328.2 530 44.0
Lsat_1_v5_gn_4_116341 Lactuca sativa HOM05D004539 ORTHO05D005482 1.5e-87 327.8 543 41.1
Ah.02g124950 Amaranthus hybridus HOM05D004539 ORTHO05D005482 5.7e-87 325.9 518 48.5
Sopen04g034650 Solanum pennellii HOM05D004539 ORTHO05D005482 9.7e-87 325.1 474 46.0
BcaC06g33276 Brassica carinata HOM05D004539 ORTHO05D005482 6.3e-86 322.4 535 46.7
C07p45610 Brassica napus HOM05D004539 ORTHO05D005482 6.3e-86 322.4 535 46.7
CARHR159060 Cardamine hirsuta HOM05D004539 ORTHO05D005482 6.3e-86 322.4 539 45.8
unitig_578.g16661 Utricularia gibba HOM05D004539 ORTHO05D005482 6.9e-85 318.9 528 42.2
PGSC0003DMG400003712 Solanum tuberosum HOM05D004539 ORTHO05D005482 1.0e-83 315.1 519 42.8
Aqoxy7G01402 Aquilegia oxysepala HOM05D004539 ORTHO05D005482 2.9e-83 313.5 510 42.4
FAN01G2597 Fragaria x ananassa HOM05D004539 ORTHO05D005482 3.8e-83 313.2 201 90.0
Actinidia29798 Actinidia chinensis HOM05D004539 ORTHO05D005482 6.5e-83 312.4 535 43.9
Peaxi162Scf00287g00122 Petunia axillaris HOM05D004539 ORTHO05D005482 3.2e-82 310.1 469 43.9
ATR0691G247 Amborella trichopoda HOM05D004539 ORTHO05D005482 2.1e-81 307.4 559 40.4
CDE12G0120 Ceratophyllum demersum HOM05D004539 ORTHO05D005482 7.7e-76 288.9 564 38.1
HanXRQChr09g0269371 Helianthus annuus HOM05D004539 ORTHO05D005482 2.2e-75 287.3 410 46.6
Lj4C792T1 Lonicera japonica HOM05D004539 ORTHO05D005482 1.4e-74 284.6 548 42.5
QL02p010726 Quercus lobata HOM05D004539 ORTHO05D005482 1.2e-73 281.6 301 56.1
HPP92_016110 Vanilla planifolia HOM05D004539 ORTHO05D005482 1.5e-71 274.6 569 37.3
Oeu030391.1 Olea europaea HOM05D004539 ORTHO05D005482 9.7e-71 271.9 527 39.8
Cpa.g.sc1191.1 Carica papaya HOM05D004539 ORTHO05D005482 1.6e-65 254.6 300 52.3
MBI05_g04844_MAGBIO Magnolia biondii HOM05D004539 ORTHO05D005482 1.7e-62 244.6 731 34.5
CAN.G851.15 Capsicum annuum HOM05D004539 ORTHO05D005482 2.8e-62 243.8 350 46.3
FAN05G0730 Fragaria x ananassa HOM05D000664 ORTHO05D000491 8.2e-62 242.3 236 66.5
Eucgr.E04075 Eucalyptus grandis HOM05D004539 ORTHO05D005482 7.2e-58 229.2 314 45.5
Zm00001eb018110 Zea mays HOM05D004539 ORTHO05D005482 4.0e-56 223.4 522 42.1
Os03g0372700 Oryza sativa ssp. japonica HOM05D004539 ORTHO05D005482 2.6e-55 220.7 523 41.7
SEGI_17236 Sequoiadendron giganteum HOM05D004539 ORTHO05D005482 4.8e-54 216.5 600 32.3
Zm00001eb394100 Zea mays HOM05D004539 ORTHO05D005482 8.3e-54 215.7 525 40.2
Zm00001eb394110 Zea mays HOM05D004539 ORTHO05D005482 8.3e-54 215.7 525 40.2
Pp3c26_3100 Physcomitrium patens HOM05D004539 ORTHO05D005482 8.0e-41 172.6 576 33.2
Nitab4.5_0006718g0010 Nicotiana tabacum HOM05D004539 ORTHO05D005482 1.4e-40 171.8 188 55.9
SHI27908 Sapria himalayana HOM05D004539 ORTHO05D005482 3.7e-38 163.7 291 39.9
TAR628G0156 Trochodendron aralioides HOM05D004539 ORTHO05D005482 3.7e-38 163.7 136 70.6
Mapoly0079s0035 Marchantia polymorpha HOM05D004539 ORTHO05D005482 4.5e-36 156.8 591 29.3
QL02p010735 Quercus lobata HOM05D004539 ORTHO05D005482 1.4e-29 135.2 227 52.0
CBR_g23809 Chara braunii HOM05D004539 ORTHO05D005482 4.6e-28 130.2 649 26.8
SEGI_09517 Sequoiadendron giganteum HOM05D004539 ORTHO05D005482 8.0e-25 119.4 428 29.2
AagrBONN_evm.TU.Sc2ySwM_344.1857 Anthoceros agrestis HOM05D004539 ORTHO05D005482 1.1e-24 119.0 489 29.2
CDE04G1317 Ceratophyllum demersum HOM05D004539 ORTHO05D009003 2.1e-20 104.8 416 27.9
MELO3C004859.2 Cucumis melo HOM05D004539 ORTHO05D005482 1.7e-19 101.7 88 58.0
Os07g0634300 Oryza sativa ssp. japonica HOM05D004539 ORTHO05D005482 2.1e-17 94.7 220 35.9
Zm00001eb328540 Zea mays HOM05D004539 ORTHO05D005482 1.1e-13 82.4 457 25.6
Potri.002G028100 Populus trichocarpa HOM05D004539 ORTHO05D005482 5.4e-13 80.1 135 43.7
AagrBONN_evm.TU.Sc2ySwM_344.3799 Anthoceros agrestis HOM05D004539 ORTHO05D005482 9.2e-13 79.3 407 26.3
MELO3C014949.2 Cucumis melo HOM05D004539 ORTHO05D005482 3.5e-12 77.4 118 42.4
BcaB05g23177 Brassica carinata HOM05D004539 ORTHO05D005482 3.0e-11 74.3 115 42.6
SMO367G1003 Selaginella moellendorffii HOM05D004539 ORTHO05D005482 1.5e-10 72.0 120 37.5
TAR369G0231 Trochodendron aralioides HOM05D004539 ORTHO05D005482 2.5e-10 71.2 105 42.9
Rhsim06G0016800 Rhododendron simsii HOM05D004539 ORTHO05D005482 5.6e-10 70.1 152 38.2
Rhsim06G0017000 Rhododendron simsii HOM05D004539 ORTHO05D005482 1.6e-09 68.6 146 38.4
PRCOL_00001157 Prasinoderma coloniale HOM05D004539 ORTHO05D005482 1.1e-08 65.9 354 24.6
RcHm_v2.0_Chr1g0360321 Rosa chinensis HOM05D004539 ORTHO05D005482 1.5e-07 62.0 43 79.1


User provided reference genes

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