Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN27G2002 Fragaria x ananassa HOM05D003866 ORTHO05D004508 5.4e-136 487.6 245 100.0
FAN15G0670 Fragaria x ananassa HOM05D003866 ORTHO05D004508 1.7e-126 456.1 240 97.1
FAN11G1587 Fragaria x ananassa HOM05D003866 ORTHO05D004508 2.6e-122 442.2 241 94.2
FvH4_2g25231 Fragaria vesca HOM05D003866 ORTHO05D004508 5.8e-122 441.0 236 94.9
FvH4_3g05411 Fragaria vesca HOM05D003866 ORTHO05D004508 3.5e-119 431.8 236 94.5
RcHm_v2.0_Chr5g0006471 Rosa chinensis HOM05D003866 ORTHO05D004508 8.1e-116 420.6 236 90.7
RcHm_v2.0_Chr6g0293371 Rosa chinensis HOM05D003866 ORTHO05D004508 6.9e-115 417.5 236 90.7
RcHm_v2.0_Chr7g0221651 Rosa chinensis HOM05D003866 ORTHO05D004508 6.7e-110 401.0 236 86.0
Prupe.8G257100 Prunus persica HOM05D003866 ORTHO05D004508 1.9e-109 399.4 233 84.5
FAN24G3471 Fragaria x ananassa HOM05D003866 ORTHO05D004508 2.6e-106 389.0 202 97.0
FvH4_7g06070 Fragaria vesca HOM05D003866 ORTHO05D004508 1.0e-105 387.1 236 83.1
MD03G1282400 Malus domestica HOM05D003866 ORTHO05D004508 7.1e-104 380.9 236 80.9
MD11G1303900 Malus domestica HOM05D003866 ORTHO05D004508 1.0e-102 377.1 228 83.8
CiPaw.08G097800 Carya illinoinensis HOM05D003866 ORTHO05D004508 5.7e-101 371.3 228 81.1
Haze_04883 Corylus avellana HOM05D003866 ORTHO05D004508 2.1e-100 369.4 228 81.1
CANSAT25G0267 Cannabis sativa HOM05D003866 ORTHO05D004508 2.6e-98 362.5 236 77.1
Cfa005958 Carpinus fangiana HOM05D003866 ORTHO05D004508 2.6e-98 362.5 232 78.9
TWI14G1088 Tripterygium wilfordii HOM05D003866 ORTHO05D004508 4.5e-98 361.7 233 78.1
GSVIVG01027965001 Vitis vinifera HOM05D003866 ORTHO05D004508 4.5e-98 361.7 231 78.4
CANSAT25G2840 Cannabis sativa HOM05D003866 ORTHO05D004508 7.6e-98 360.9 236 77.1
Ciclev10022066m.g Citrus clementina HOM05D003866 ORTHO05D004508 8.5e-97 357.5 228 76.8
Atru.chr5.1203 Acer truncatum HOM05D003866 ORTHO05D004508 1.1e-96 357.1 228 78.9
FAN10G2101 Fragaria x ananassa HOM05D003866 ORTHO05D004508 1.4e-96 356.7 236 78.4
Prupe.6G179600 Prunus persica HOM05D003866 ORTHO05D004508 1.4e-96 356.7 234 75.2
Eucgr.K03458 Eucalyptus grandis HOM05D003866 ORTHO05D004508 1.9e-96 356.3 227 79.3
Potri.010G206900 Populus trichocarpa HOM05D003866 ORTHO05D004508 5.5e-96 354.8 227 78.4
RcHm_v2.0_Chr1g0333581 Rosa chinensis HOM05D003866 ORTHO05D004508 7.2e-96 354.4 239 77.8
CsaV3_4G000530 Cucumis sativus L. HOM05D003866 ORTHO05D004508 1.6e-95 353.2 231 75.8
Dinv33030 Davidia involucrata HOM05D003866 ORTHO05D004508 2.3e-94 349.4 227 76.7
Cpa.g.sc11.50 Carica papaya HOM05D003866 ORTHO05D004508 1.1e-93 347.1 231 74.5
Dinv19723 Davidia involucrata HOM05D003866 ORTHO05D004508 1.1e-93 347.1 227 77.1
Lj1A33G82 Lonicera japonica HOM05D003866 ORTHO05D004508 5.7e-93 344.7 227 76.7
vmacro02471 Vaccinium macrocarpon HOM05D003866 ORTHO05D004508 7.4e-93 344.4 227 75.3
HanXRQChr04g0118161 Helianthus annuus HOM05D003866 ORTHO05D004508 9.7e-93 344.0 228 73.7
Rhsim13G0013000 Rhododendron simsii HOM05D003866 ORTHO05D004508 9.7e-93 344.0 227 75.8
Cc01_g20600 Coffea canephora HOM05D003866 ORTHO05D004508 1.6e-92 343.2 227 75.3
Sed0016300 Sechium edule HOM05D003866 ORTHO05D004508 1.6e-92 343.2 230 73.5
Sabra08G0038800 Salix brachista HOM05D003866 ORTHO05D004508 2.8e-92 342.4 222 77.5
COL.COLO4_23391 Corchorus olitorius HOM05D003866 ORTHO05D004508 3.7e-92 342.0 231 73.2
CSS0038127 Camellia sinensis var. sinensis HOM05D003866 ORTHO05D004508 4.8e-92 341.7 227 75.3
Cc01_g06400 Coffea canephora HOM05D003866 ORTHO05D004508 6.3e-92 341.3 227 75.3
Manes.12G006300 Manihot esculenta HOM05D003866 ORTHO05D004508 1.1e-91 340.5 229 74.7
EL10Ac4g07959 Beta vulgaris HOM05D003866 ORTHO05D004508 1.4e-91 340.1 228 74.1
Lj2A1190T61 Lonicera japonica HOM05D003866 ORTHO05D004508 2.4e-91 339.3 228 75.4
Lalb_Chr04g0259781 Lupinus albus HOM05D003866 ORTHO05D004508 2.4e-91 339.3 229 73.8
TAR636G2430 Trochodendron aralioides HOM05D003866 ORTHO05D004508 2.4e-91 339.3 231 74.0
arahy.Tifrunner.gnm1.ann1.44W6WI Arachis hypogaea HOM05D003866 ORTHO05D004508 6.9e-91 337.8 224 74.1
Ca_09142_v3 Cicer arietinum L. HOM05D003866 ORTHO05D004508 6.9e-91 337.8 233 70.0
Glyma.03G212300 Glycine max HOM05D003866 ORTHO05D004508 6.9e-91 337.8 234 69.7
Gohir.A12G010200 Gossypium hirsutum HOM05D003866 ORTHO05D004508 6.9e-91 337.8 230 72.2
Lsat_1_v5_gn_8_54720 Lactuca sativa HOM05D003866 ORTHO05D004508 6.9e-91 337.8 228 74.6
RhsimUnG0168700 Rhododendron simsii HOM05D003866 ORTHO05D004508 6.9e-91 337.8 227 75.3
Manes.13G006100 Manihot esculenta HOM05D003866 ORTHO05D004508 9.1e-91 337.4 230 71.7
Oeu024509.1 Olea europaea HOM05D003866 ORTHO05D004508 1.2e-90 337.0 228 73.7
Aqoxy5G00709 Aquilegia oxysepala HOM05D003866 ORTHO05D004508 2.6e-90 335.9 232 72.4
MSTRG.18171 Avicennia marina HOM05D003866 ORTHO05D004508 2.6e-90 335.9 228 74.1
Glyma.19G209400 Glycine max HOM05D003866 ORTHO05D004508 2.6e-90 335.9 235 68.9
Medtr2g014120 Medicago truncatula HOM05D003866 ORTHO05D004508 4.5e-90 335.1 233 70.0
Hund18125 Selenicereus undatus HOM05D003866 ORTHO05D004508 4.5e-90 335.1 227 74.9
AUR62022186 Chenopodium quinoa HOM05D003866 ORTHO05D004508 5.9e-90 334.7 229 72.9
DCAR_024209 Daucus carota HOM05D003866 ORTHO05D004508 5.9e-90 334.7 227 75.3
Gohir.D04G003400 Gossypium hirsutum HOM05D003866 ORTHO05D004508 5.9e-90 334.7 229 72.1
Medtr7g108540 Medicago truncatula HOM05D003866 ORTHO05D004508 5.9e-90 334.7 233 70.0
Gohir.D12G010300 Gossypium hirsutum HOM05D003866 ORTHO05D004508 1.0e-89 334.0 223 74.0
ECA236G1731 Erigeron canadensis HOM05D003866 ORTHO05D004508 1.3e-89 333.6 228 72.4
Gorai.012G004500 Gossypium raimondii HOM05D003866 ORTHO05D004508 1.3e-89 333.6 229 71.6
Duzib133G0502 Durio zibethinus HOM05D003866 ORTHO05D004508 1.7e-89 333.2 229 72.1
Actinidia24328 Actinidia chinensis HOM05D003866 ORTHO05D004508 2.2e-89 332.8 227 74.0
Gorai.008G010300 Gossypium raimondii HOM05D003866 ORTHO05D004508 2.2e-89 332.8 230 71.7
Phvul.001G205200 Phaseolus vulgaris HOM05D003866 ORTHO05D004508 2.9e-89 332.4 231 68.8
Psat3g022720 Pisum sativum HOM05D003866 ORTHO05D004508 3.8e-89 332.0 232 69.4
Lj1C0G2 Lonicera japonica HOM05D003866 ORTHO05D004508 5.0e-89 331.6 209 79.4
CSS0036127 Camellia sinensis var. sinensis HOM05D003866 ORTHO05D004508 8.5e-89 330.9 227 74.0
HanXRQChr06g0163901 Helianthus annuus HOM05D003866 ORTHO05D004508 1.4e-88 330.1 229 71.6
Nitab4.5_0000051g0210 Nicotiana tabacum HOM05D003866 ORTHO05D004508 1.4e-88 330.1 227 73.1
Nn4g25882 Nelumbo nucifera HOM05D003866 ORTHO05D004508 1.9e-88 329.7 232 69.8
Lj1g0017340 Lotus japonicus HOM05D003866 ORTHO05D004508 2.5e-88 329.3 232 69.0
TAR365G0487 Trochodendron aralioides HOM05D003866 ORTHO05D004508 2.5e-88 329.3 231 73.2
AUR62031891 Chenopodium quinoa HOM05D003866 ORTHO05D004508 4.2e-88 328.6 229 72.1
Sopen11g008460 Solanum pennellii HOM05D003866 ORTHO05D004508 7.2e-88 327.8 227 72.2
SalBow2G1869 Salvia bowleyana HOM05D003866 ORTHO05D004508 1.6e-87 326.6 227 73.6
TPR.G9596 Trifolium pratense HOM05D003866 ORTHO05D004508 1.6e-87 326.6 233 67.8
CAN.G337.118 Capsicum annuum HOM05D003866 ORTHO05D004508 2.1e-87 326.2 227 72.2
PGSC0003DMG400027789 Solanum tuberosum HOM05D003866 ORTHO05D004508 2.7e-87 325.9 227 71.4
Solyc11g013460.2 Solanum lycopersicum HOM05D003866 ORTHO05D004508 3.6e-87 325.5 227 71.8
VMungo1383G2803 Vigna mungo HOM05D003866 ORTHO05D004508 3.6e-87 325.5 232 68.1
Nitab4.5_0004737g0020 Nicotiana tabacum HOM05D003866 ORTHO05D004508 4.6e-87 325.1 227 72.2
Migut.I00105 Erythranthe guttata HOM05D003866 ORTHO05D004508 6.1e-87 324.7 224 71.9
MBI19_g41921_MAGBIO Magnolia biondii HOM05D003866 ORTHO05D004508 6.1e-87 324.7 238 67.6
Peaxi162Scf00140g01011 Petunia axillaris HOM05D003866 ORTHO05D004508 7.9e-87 324.3 229 70.7
SGA_v2.0_scaffold1G00383 Striga asiatica HOM05D003866 ORTHO05D004508 7.9e-87 324.3 227 71.4
AT2G27490 Arabidopsis thaliana HOM05D003866 ORTHO05D004508 1.4e-86 323.6 228 69.3
BcaB01g03075 Brassica carinata HOM05D003866 ORTHO05D004508 2.3e-86 322.8 224 69.6
arahy.Tifrunner.gnm1.ann1.AT77GA Arachis hypogaea HOM05D003866 ORTHO05D004508 3.0e-86 322.4 224 71.0
ClCG10G010790 Citrullus lanatus HOM05D003866 ORTHO05D004508 3.9e-86 322.0 313 56.2
PGR031G3621 Punica granatum HOM05D003866 ORTHO05D004508 6.7e-86 321.2 268 63.4
Aa31LG5G8830 Aethionema arabicum HOM05D003866 ORTHO05D004508 8.8e-86 320.9 228 69.3
Sp4g10360 Schrenkiella parvula HOM05D003866 ORTHO05D004508 8.8e-86 320.9 228 68.9
TAR365G0990 Trochodendron aralioides HOM05D003866 ORTHO05D004508 8.8e-86 320.9 235 71.5
unitig_8.g3710 Utricularia gibba HOM05D003866 ORTHO05D004508 1.1e-85 320.5 228 70.2
AL4G21480 Arabidopsis lyrata HOM05D003866 ORTHO05D004508 1.5e-85 320.1 228 68.9
Thhalv10017203m.g Eutrema salsugineum HOM05D003866 ORTHO05D004508 2.0e-85 319.7 228 68.4
BolC3t15527H Brassica oleracea HOM05D003866 ORTHO05D004508 2.6e-85 319.3 228 68.4
PGSC0003DMG400027790 Solanum tuberosum HOM05D003866 ORTHO05D004508 2.6e-85 319.3 227 70.5
BcaC01g04944 Brassica carinata HOM05D003866 ORTHO05D004508 3.3e-85 318.9 228 68.4
C03p31840 Brassica napus HOM05D003866 ORTHO05D004508 3.3e-85 318.9 228 68.4
PSO832G2724 Papaver somniferum HOM05D003866 ORTHO05D004508 4.4e-85 318.5 234 68.4
PSO210G0692 Papaver somniferum HOM05D003866 ORTHO05D004508 9.7e-85 317.4 234 68.8
A07p18280 Brassica napus HOM05D003866 ORTHO05D004508 1.7e-84 316.6 224 69.2
BraA03t11870Z Brassica rapa HOM05D003866 ORTHO05D004508 1.7e-84 316.6 228 68.0
ATR0706G042 Amborella trichopoda HOM05D003866 ORTHO05D004508 2.8e-84 315.8 228 68.4
A03p26580 Brassica napus HOM05D003866 ORTHO05D004508 6.3e-84 314.7 228 67.5
Thhalv10017190m.g Eutrema salsugineum HOM05D003866 ORTHO05D004508 9.1e-83 310.8 228 67.1
CARHR120140 Cardamine hirsuta HOM05D003866 ORTHO05D004508 2.0e-82 309.7 222 68.5
Thecc.01G295900 Theobroma cacao HOM05D003866 ORTHO05D004508 1.3e-81 307.0 212 70.3
Sp4g10280 Schrenkiella parvula HOM05D003866 ORTHO05D004508 7.2e-80 301.2 224 67.9
Os01g0360600 Oryza sativa ssp. japonica HOM05D003866 ORTHO05D004508 1.6e-79 300.1 227 64.3
Gohir.A05G412600 Gossypium hirsutum HOM05D003866 ORTHO05D004508 2.6e-77 292.7 221 66.5
Zm00001eb041190 Zea mays HOM05D003866 ORTHO05D004508 7.4e-77 291.2 227 62.6
Carub.0004s0812 Capsella rubella HOM05D003866 ORTHO05D004508 1.3e-76 290.4 204 71.1
BcaB02g10095 Brassica carinata HOM05D003866 ORTHO05D004508 2.2e-76 289.7 229 63.8
Sc03g0003200 Simmondsia chinensis HOM05D006805 ORTHO05D004508 2.8e-76 289.3 196 73.5
arahy.Tifrunner.gnm1.ann1.9DBC1D Arachis hypogaea HOM05D003866 ORTHO05D004508 4.8e-76 288.5 223 66.4
Sabra10G0159700 Salix brachista HOM05D003866 ORTHO05D002218 2.6e-74 282.7 192 74.0
CDE09G0414 Ceratophyllum demersum HOM05D003866 ORTHO05D004508 1.3e-73 280.4 221 62.9
SEGI_05441 Sequoiadendron giganteum HOM05D003866 ORTHO05D004508 1.1e-72 277.3 223 63.2
Hund18126 Selenicereus undatus HOM05D003866 ORTHO05D004508 5.5e-72 275.0 195 70.8
RcHm_v2.0_Chr1g0334201 Rosa chinensis HOM05D003866 ORTHO05D004508 5.2e-70 268.5 147 90.5
FAN25G0878 Fragaria x ananassa HOM05D003866 ORTHO05D004508 7.7e-66 254.6 144 88.2
Actinidia32233 Actinidia chinensis HOM05D003866 ORTHO05D004508 1.7e-65 253.4 178 71.3
AL8G17300 Arabidopsis lyrata HOM05D003866 ORTHO05D004508 1.7e-65 253.4 238 57.6
SGA_v2.0_scaffold25G10945 Striga asiatica HOM05D003866 ORTHO05D004508 3.0e-62 242.7 179 69.3
FAN20G0831 Fragaria x ananassa HOM05D003866 ORTHO05D004508 1.2e-61 240.7 124 96.0
Potri.008G053601 Populus trichocarpa HOM05D003866 ORTHO05D004508 5.9e-58 228.4 133 83.5
Mapoly0028s0053 Marchantia polymorpha HOM05D003866 ORTHO05D004508 2.5e-56 223.0 220 53.6
Nn4g25856 Nelumbo nucifera HOM05D003866 ORTHO05D004508 1.6e-55 220.3 155 71.6
AagrBONN_evm.TU.Sc2ySwM_228.2237 Anthoceros agrestis HOM05D003866 ORTHO05D004508 1.8e-54 216.9 221 49.8
Pp3c2_13260 Physcomitrium patens HOM05D003866 ORTHO05D004508 6.8e-54 214.9 226 48.7
SMO144G0118 Selaginella moellendorffii HOM05D003866 ORTHO05D004508 7.5e-53 211.5 228 48.2
RcHm_v2.0_Chr1g0333491 Rosa chinensis HOM05D003866 ORTHO05D004508 5.0e-49 198.7 119 82.4
MD12G1063200 Malus domestica HOM05D003866 ORTHO05D004508 6.6e-49 198.4 144 70.8
EL10Ac1g00209 Beta vulgaris HOM05D003866 ORTHO05D004508 8.9e-46 188.0 140 67.9
SHI02446 Sapria himalayana HOM05D003866 ORTHO05D004508 6.4e-44 181.8 135 69.6
RcHm_v2.0_Chr4g0419041 Rosa chinensis HOM05D003866 ORTHO05D004508 5.4e-43 178.7 123 74.0
Carub.0001s3498 Capsella rubella HOM05D003866 ORTHO05D004508 7.0e-43 178.3 131 66.4
arahy.Tifrunner.gnm1.ann1.ZE4P1V Arachis hypogaea HOM05D003866 ORTHO05D004508 6.6e-41 171.8 146 61.0
Sc03g0003210 Simmondsia chinensis HOM05D003866 ORTHO05D004508 6.6e-41 171.8 143 62.2
BcaC02g10889 Brassica carinata HOM05D003866 ORTHO05D004508 7.3e-40 168.3 138 59.4
Zm00001eb341290 Zea mays HOM05D003866 ORTHO05D004508 1.4e-38 164.1 142 56.3
Cre10.g436150 Chlamydomonas reinhardtii HOM05D003866 ORTHO05D004508 1.6e-34 150.6 202 42.1
QL12p026964 Quercus lobata HOM05D003866 ORTHO05D004508 7.8e-34 148.3 85 82.4
Oeu047454.1 Olea europaea HOM05D003866 ORTHO05D004508 1.0e-33 147.9 97 75.3
BolC4t23901H Brassica oleracea HOM05D003866 ORTHO05D004508 2.3e-33 146.7 109 67.9
CBR_g9110 Chara braunii HOM05D003958 ORTHO05D004864 1.5e-32 144.1 185 42.7
HPP92_010697 Vanilla planifolia HOM05D001483 ORTHO05D001463 1.9e-32 143.7 188 45.2
arahy.Tifrunner.gnm1.ann1.86SF76 Arachis hypogaea HOM05D003866 ORTHO05D004508 5.6e-32 142.1 112 63.4
BraA07t29544Z Brassica rapa HOM05D003866 ORTHO05D004508 1.2e-31 141.0 102 69.6
GSVIVG01010954001 Vitis vinifera HOM05D003866 ORTHO05D004508 1.2e-31 141.0 88 79.5
FvH4_3g05410 Fragaria vesca HOM05D003866 ORTHO05D004508 1.6e-31 140.6 98 76.5
FAN06G0461 Fragaria x ananassa HOM05D003866 ORTHO05D004508 2.6e-29 133.3 86 79.1
CAN.G174.11 Capsicum annuum HOM05D003866 ORTHO05D004508 4.4e-29 132.5 86 76.7
BcaC02g10888 Brassica carinata HOM05D003866 ORTHO05D004508 1.7e-28 130.6 82 78.0
RcHm_v2.0_Chr4g0419031 Rosa chinensis HOM05D003866 ORTHO05D004508 2.9e-28 129.8 92 75.0
ClCG10G010800 Citrullus lanatus HOM05D003866 ORTHO05D004508 4.9e-28 129.0 85 72.9
arahy.Tifrunner.gnm1.ann1.VNWS1A Arachis hypogaea HOM05D003866 ORTHO05D004508 7.1e-27 125.2 103 61.2
C04p24060 Brassica napus HOM05D003866 ORTHO05D004508 9.2e-27 124.8 95 67.4
MSTRG.21619 Avicennia marina HOM05D003866 ORTHO05D004508 2.3e-25 120.2 90 68.9
CAN.G255.6 Capsicum annuum HOM05D003866 ORTHO05D004508 1.5e-24 117.5 77 75.3
Psat5g098240 Pisum sativum HOM05D001063 ORTHO05D000986 1.2e-23 114.4 96 58.3
RcHm_v2.0_Chr6g0258301 Rosa chinensis HOM05D003866 ORTHO05D004508 1.6e-23 114.0 145 47.6
SEGI_13628 Sequoiadendron giganteum HOM05D003866 ORTHO05D004508 1.6e-23 114.0 87 64.4
QL12p026975 Quercus lobata HOM05D003866 ORTHO05D004508 4.7e-23 112.5 68 80.9
CAN.G255.7 Capsicum annuum HOM05D003866 ORTHO05D004508 4.0e-22 109.4 106 57.5
arahy.Tifrunner.gnm1.ann1.TVUZ4W Arachis hypogaea HOM05D003866 ORTHO05D004508 1.3e-17 94.4 61 75.4
DCAR_024210 Daucus carota HOM05D003866 ORTHO05D004508 1.9e-16 90.5 59 74.6
RcHm_v2.0_Chr1g0333451 Rosa chinensis HOM05D003866 ORTHO05D004508 2.1e-15 87.0 60 71.7
ClCG10G010610 Citrullus lanatus HOM05D003866 ORTHO05D004508 1.8e-14 84.0 77 57.1
PRCOL_00003268 Prasinoderma coloniale HOM05D003001 ORTHO05D003494 4.4e-13 79.3 187 29.4
MD14G1128400 Malus domestica HOM05D003866 ORTHO05D004508 3.8e-12 76.3 51 76.5
MCO11G607 Micromonas commoda HOM05D003866 ORTHO05D004508 4.9e-12 75.9 219 27.4
SHI02445 Sapria himalayana HOM05D003866 ORTHO05D004508 2.7e-10 70.1 49 65.3
HanXRQChr04g0118191 Helianthus annuus HOM05D003866 ORTHO05D004508 7.8e-10 68.6 67 52.2


User provided reference genes

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