Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN27G1976 Fragaria x ananassa HOM05D005146 ORTHO05D006752 1.3e-154 549.7 274 100.0
FvH4_2g38650 Fragaria vesca HOM05D005146 ORTHO05D006752 8.4e-154 547.0 274 99.3
FAN15G2679 Fragaria x ananassa HOM05D005146 ORTHO05D006752 1.1e-153 546.6 274 99.3
FAN20G2808 Fragaria x ananassa HOM05D005146 ORTHO05D006752 2.7e-152 542.0 274 98.5
RcHm_v2.0_Chr6g0302671 Rosa chinensis HOM05D005146 ORTHO05D006752 6.0e-152 540.8 274 97.8
MD15G1013600 Malus domestica HOM05D005146 ORTHO05D006752 2.3e-143 512.3 271 92.3
Prupe.1G367100 Prunus persica HOM05D005146 ORTHO05D006752 5.1e-143 511.1 271 91.9
MD08G1014100 Malus domestica HOM05D005146 ORTHO05D006752 6.9e-140 500.7 271 90.0
Haze_04102 Corylus avellana HOM05D005146 ORTHO05D006752 3.9e-135 485.0 271 86.7
Cfa006669 Carpinus fangiana HOM05D005146 ORTHO05D006752 1.9e-134 482.6 271 86.7
CANSAT11G0704 Cannabis sativa HOM05D005146 ORTHO05D006752 3.3e-134 481.9 271 85.6
Cc10_g01800 Coffea canephora HOM05D005146 ORTHO05D006752 3.3e-134 481.9 271 86.3
BcaNung05185 Brassica carinata HOM05D005146 ORTHO05D006752 9.7e-134 480.3 272 84.6
CiPaw.07G151400 Carya illinoinensis HOM05D005146 ORTHO05D006752 9.7e-134 480.3 271 84.9
BcaC09g51970 Brassica carinata HOM05D005146 ORTHO05D006752 1.3e-133 479.9 272 84.6
BolC1t00708H Brassica oleracea HOM05D005146 ORTHO05D006752 1.3e-133 479.9 272 84.6
Sp7g29580 Schrenkiella parvula HOM05D005146 ORTHO05D006752 1.3e-133 479.9 272 84.2
AT4G31790 Arabidopsis thaliana HOM05D005146 ORTHO05D006752 1.6e-133 479.6 272 84.9
Carub.0007s0877 Capsella rubella HOM05D005146 ORTHO05D006752 2.2e-133 479.2 272 84.2
GSVIVG01009887001 Vitis vinifera HOM05D005146 ORTHO05D006752 2.8e-133 478.8 271 85.2
BraA01t00610Z Brassica rapa HOM05D005146 ORTHO05D006752 3.7e-133 478.4 272 84.2
QL02p011373 Quercus lobata HOM05D005146 ORTHO05D006752 3.7e-133 478.4 271 84.5
Rhsim06G0022400 Rhododendron simsii HOM05D005146 ORTHO05D006752 6.3e-133 477.6 270 85.6
Thhalv10025950m.g Eutrema salsugineum HOM05D005146 ORTHO05D006752 1.4e-132 476.5 272 84.9
A01p06490 Brassica napus HOM05D005146 ORTHO05D006752 1.8e-132 476.1 272 83.8
AL7G20220 Arabidopsis lyrata HOM05D005146 ORTHO05D006752 2.4e-132 475.7 272 84.6
C01p07160 Brassica napus HOM05D005146 ORTHO05D006752 2.4e-132 475.7 272 84.2
Atru.chr13.312 Acer truncatum HOM05D005146 ORTHO05D006752 5.3e-132 474.6 271 83.8
CARHR239690 Cardamine hirsuta HOM05D005146 ORTHO05D006752 9.1e-132 473.8 272 84.2
Manes.11G065850 Manihot esculenta HOM05D005146 ORTHO05D006752 9.1e-132 473.8 271 83.4
Ciclev10002090m.g Citrus clementina HOM05D005146 ORTHO05D006752 2.0e-131 472.6 271 84.1
DCAR_009928 Daucus carota HOM05D005146 ORTHO05D006752 2.0e-131 472.6 270 84.4
Aa31LG2G18510 Aethionema arabicum HOM05D005146 ORTHO05D006752 2.6e-131 472.2 272 82.7
PGSC0003DMG400003775 Solanum tuberosum HOM05D005146 ORTHO05D006752 3.4e-131 471.9 270 83.0
Thecc.09G245400 Theobroma cacao HOM05D005146 ORTHO05D006752 3.4e-131 471.9 271 82.7
Actinidia15413 Actinidia chinensis HOM05D005146 ORTHO05D006752 4.5e-131 471.5 270 84.8
CAN.G311.14 Capsicum annuum HOM05D005146 ORTHO05D006752 4.5e-131 471.5 270 83.0
Manes.05G148600 Manihot esculenta HOM05D005146 ORTHO05D006752 4.5e-131 471.5 271 83.4
Solyc04g081310.3 Solanum lycopersicum HOM05D005146 ORTHO05D006752 4.5e-131 471.5 270 83.3
Sopen04g034930 Solanum pennellii HOM05D005146 ORTHO05D006752 4.5e-131 471.5 270 83.3
Dinv31832 Davidia involucrata HOM05D005146 ORTHO05D006752 5.9e-131 471.1 270 84.8
Ca_14210_v3 Cicer arietinum L. HOM05D005146 ORTHO05D006752 1.0e-130 470.3 271 82.3
TWI56G0936 Tripterygium wilfordii HOM05D005146 ORTHO05D006752 1.0e-130 470.3 271 84.1
Medtr3g113750 Medicago truncatula HOM05D005146 ORTHO05D006752 1.3e-130 469.9 271 83.4
Potri.002G023700 Populus trichocarpa HOM05D005146 ORTHO05D006752 1.7e-130 469.5 271 81.2
Nitab4.5_0001540g0020 Nicotiana tabacum HOM05D005146 ORTHO05D006752 2.2e-130 469.2 270 82.6
Gohir.A08G010500 Gossypium hirsutum HOM05D005146 ORTHO05D006752 3.8e-130 468.4 271 81.5
ECA238G2776 Erigeron canadensis HOM05D005146 ORTHO05D006752 6.5e-130 467.6 271 81.9
PGR083G0855 Punica granatum HOM05D005146 ORTHO05D006752 8.5e-130 467.2 271 82.7
CsaV3_2G029420 Cucumis sativus L. HOM05D005146 ORTHO05D006752 1.1e-129 466.8 272 81.6
Gohir.D08G020900 Gossypium hirsutum HOM05D005146 ORTHO05D006752 1.9e-129 466.1 271 81.5
TPR.G34539 Trifolium pratense HOM05D005146 ORTHO05D006752 1.9e-129 466.1 271 81.2
PSO700G0287 Papaver somniferum HOM05D005146 ORTHO05D006752 3.2e-129 465.3 270 82.6
Cpa.g.sc1059.3 Carica papaya HOM05D005146 ORTHO05D006752 4.2e-129 464.9 271 82.3
Nn6g32362 Nelumbo nucifera HOM05D005146 ORTHO05D006752 4.2e-129 464.9 270 82.6
THA.LOC104825772 Tarenaya hassleriana HOM05D005146 ORTHO05D006752 5.5e-129 464.5 271 80.4
HanXRQChr06g0183611 Helianthus annuus HOM05D005146 ORTHO05D006752 7.2e-129 464.2 272 80.9
Lsat_1_v5_gn_2_8601 Lactuca sativa HOM05D005146 ORTHO05D006752 7.2e-129 464.2 271 80.8
Lalb_Chr23g0266181 Lupinus albus HOM05D005146 ORTHO05D006752 7.2e-129 464.2 271 81.5
Sabra02G0019300 Salix brachista HOM05D005146 ORTHO05D006752 7.2e-129 464.2 271 80.4
VMungo0251G0853 Vigna mungo HOM05D005146 ORTHO05D006752 1.6e-128 463.0 271 81.5
PSO170G4907 Papaver somniferum HOM05D005146 ORTHO05D006752 2.1e-128 462.6 269 82.5
Glyma.07G217500 Glycine max HOM05D005146 ORTHO05D006752 7.9e-128 460.7 271 81.9
Psat5g013440 Pisum sativum HOM05D005146 ORTHO05D006752 7.9e-128 460.7 271 80.4
Glyma.20G014100 Glycine max HOM05D005146 ORTHO05D006752 2.3e-127 459.1 271 81.9
Eucgr.F01641 Eucalyptus grandis HOM05D005146 ORTHO05D006752 3.0e-127 458.8 271 80.8
Phvul.001G002400 Phaseolus vulgaris HOM05D005146 ORTHO05D006752 3.0e-127 458.8 271 81.9
Sed0001191 Sechium edule HOM05D005146 ORTHO05D006752 3.9e-127 458.4 272 79.0
Migut.N03153 Erythranthe guttata HOM05D005146 ORTHO05D006752 8.8e-127 457.2 271 80.1
CSS0007392 Camellia sinensis var. sinensis HOM05D005146 ORTHO05D006752 2.0e-126 456.1 270 82.2
CSS0032974 Camellia sinensis var. sinensis HOM05D005146 ORTHO05D006752 2.0e-126 456.1 270 82.2
Lj1g0002754 Lotus japonicus HOM05D005146 ORTHO05D006752 2.6e-126 455.7 271 81.5
Hund05199 Selenicereus undatus HOM05D005146 ORTHO05D006752 3.7e-125 451.8 270 79.6
EL10Ac6g13895 Beta vulgaris HOM05D005146 ORTHO05D006752 6.3e-125 451.1 304 74.7
SGA_v2.0_scaffold12G05971 Striga asiatica HOM05D005146 ORTHO05D006752 2.0e-123 446.0 271 77.9
Ah.08g209140 Amaranthus hybridus HOM05D005146 ORTHO05D006752 1.7e-122 443.0 302 73.5
Oeu020876.1 Olea europaea HOM05D005146 ORTHO05D006752 3.8e-122 441.8 262 80.5
arahy.Tifrunner.gnm1.ann1.DQ6KFY Arachis hypogaea HOM05D005146 ORTHO05D006752 5.0e-122 441.4 271 78.2
arahy.Tifrunner.gnm1.ann1.RM6BI2 Arachis hypogaea HOM05D005146 ORTHO05D006752 1.1e-121 440.3 271 77.5
COL.COLO4_37538 Corchorus olitorius HOM05D005146 ORTHO05D006752 1.1e-121 440.3 257 81.3
ATR0797G002 Amborella trichopoda HOM05D005146 ORTHO05D006752 1.4e-121 439.9 270 77.4
AUR62019460 Chenopodium quinoa HOM05D005146 ORTHO05D006752 1.4e-121 439.9 270 78.9
Os03g0355800 Oryza sativa ssp. japonica HOM05D005146 ORTHO05D006752 1.4e-121 439.9 270 76.7
Aqoxy5G01768 Aquilegia oxysepala HOM05D005146 ORTHO05D006752 1.9e-121 439.5 270 77.4
arahy.Tifrunner.gnm1.ann1.VN499F Arachis hypogaea HOM05D005146 ORTHO05D006752 3.2e-121 438.7 271 77.9
unitig_746.g26814 Utricularia gibba HOM05D005146 ORTHO05D006752 4.7e-120 434.9 270 76.7
Lj5g0000481 Lotus japonicus HOM05D005146 ORTHO05D006752 6.1e-120 434.5 271 77.5
RcHm_v2.0_Chr7g0221331 Rosa chinensis HOM05D005146 ORTHO05D006752 1.0e-119 433.7 274 82.5
HPP92_027733 Vanilla planifolia HOM05D005146 ORTHO05D006752 2.3e-119 432.6 271 74.9
ClCG08G014400 Citrullus lanatus HOM05D005146 ORTHO05D006752 1.5e-118 429.9 272 75.4
Duzib150G0501 Durio zibethinus HOM05D005146 ORTHO05D006752 2.6e-118 429.1 271 77.5
Zm00001eb017150 Zea mays HOM05D005146 ORTHO05D006752 2.6e-118 429.1 270 75.2
arahy.Tifrunner.gnm1.ann1.NX94TN Arachis hypogaea HOM05D005146 ORTHO05D006752 2.4e-116 422.5 301 69.4
Aqoxy6G00492 Aquilegia oxysepala HOM05D005146 ORTHO05D006752 7.0e-116 421.0 261 76.2
Mapoly0107s0028 Marchantia polymorpha HOM05D005146 ORTHO05D006752 3.5e-115 418.7 271 72.3
MELO3C011001.2 Cucumis melo HOM05D005146 ORTHO05D006752 5.9e-115 417.9 284 72.5
Gorai.004G015300 Gossypium raimondii HOM05D005146 ORTHO05D006752 1.7e-114 416.4 271 74.5
MBI09_g15694_MAGBIO Magnolia biondii HOM05D005146 ORTHO05D006752 5.0e-114 414.8 381 57.7
AagrBONN_evm.TU.Sc2ySwM_117.1420 Anthoceros agrestis HOM05D005146 ORTHO05D006752 8.5e-114 414.1 274 70.1
Pp3c25_4490 Physcomitrium patens HOM05D005146 ORTHO05D006752 7.2e-113 411.0 271 70.8
AagrBONN_evm.TU.Sc2ySwM_368.2751 Anthoceros agrestis HOM05D005146 ORTHO05D006752 9.4e-113 410.6 274 69.7
Peaxi162Scf00438g00626 Petunia axillaris HOM05D005146 ORTHO05D006752 1.0e-111 407.1 270 74.4
CDE05G1835 Ceratophyllum demersum HOM05D005146 ORTHO05D006752 4.4e-110 401.7 241 79.7
SalBow3G2629 Salvia bowleyana HOM05D005146 ORTHO05D006752 9.7e-110 400.6 241 77.6
vmacro21720 Vaccinium macrocarpon HOM05D005146 ORTHO05D006752 1.4e-108 396.7 221 86.0
SMO146G0393 Selaginella moellendorffii HOM05D005146 ORTHO05D006752 4.5e-107 391.7 273 66.3
HPP92_026026 Vanilla planifolia HOM05D005146 ORTHO05D006752 3.8e-106 388.7 244 74.2
Hma1.2p1_0638F.1_g193760 Hydrangea macrophylla HOM05D005146 ORTHO05D006752 8.5e-106 387.5 220 84.1
CSS0032399 Camellia sinensis var. sinensis HOM05D005146 ORTHO05D006752 2.3e-98 362.8 251 73.3
CBR_g41468 Chara braunii HOM05D005146 ORTHO05D006752 2.9e-98 362.5 271 63.1
Cre05.g233300 Chlamydomonas reinhardtii HOM05D005146 ORTHO05D006752 4.2e-97 358.6 271 64.6
Lsat_1_v5_gn_2_8681 Lactuca sativa HOM05D004999 ORTHO05D007513 4.2e-97 358.6 222 77.0
TAR628G0140 Trochodendron aralioides HOM05D005146 ORTHO05D006752 3.0e-95 352.4 196 85.2
C09p44220 Brassica napus HOM05D005146 ORTHO05D006752 2.2e-93 346.3 272 65.1
BolC8t49001H Brassica oleracea HOM05D005146 ORTHO05D006752 1.4e-92 343.6 271 66.1
C08p13630 Brassica napus HOM05D005146 ORTHO05D006752 5.4e-92 341.7 271 65.7
MCO08G273 Micromonas commoda HOM05D005146 ORTHO05D006752 5.0e-90 335.1 271 59.4
PRCOL_00004436 Prasinoderma coloniale HOM05D005146 ORTHO05D006752 5.2e-87 325.1 288 57.3
BcaC04g20385 Brassica carinata HOM05D005146 ORTHO05D006752 7.5e-86 321.2 273 61.9
Sc26g0004380 Simmondsia chinensis HOM05D005146 ORTHO05D006752 8.6e-82 307.8 178 79.2
BcaC04g20389 Brassica carinata HOM05D005146 ORTHO05D006752 1.8e-79 300.1 272 58.5
Haze_26822 Corylus avellana HOM05D005146 ORTHO05D006752 4.9e-77 292.0 276 52.2
Oeu039057.1 Olea europaea HOM05D005146 ORTHO05D006752 1.4e-76 290.4 240 63.3
ATR0816G001 Amborella trichopoda HOM05D005146 ORTHO05D006752 2.1e-72 276.6 168 78.6
MSTRG.25237 Avicennia marina HOM05D005146 ORTHO05D006752 1.7e-69 266.9 152 80.3
Lj4A797T61 Lonicera japonica HOM05D005146 ORTHO05D006752 3.5e-67 259.2 152 83.6
Medtr1g107520 Medicago truncatula HOM05D005146 ORTHO05D006752 7.3e-65 251.5 165 76.4
AUR62036170 Chenopodium quinoa HOM05D005146 ORTHO05D006752 4.7e-64 248.8 205 63.9
BolC9t57294H Brassica oleracea HOM05D005146 ORTHO05D006752 1.1e-57 227.6 154 72.7
BcaC04g20387 Brassica carinata HOM05D005146 ORTHO05D006752 2.1e-56 223.4 273 49.1
CSS0002428 Camellia sinensis var. sinensis HOM05D005146 ORTHO05D006752 1.0e-50 204.5 270 47.4
Duzib170G0783 Durio zibethinus HOM05D005146 ORTHO05D006752 1.9e-49 200.3 271 44.6
MELO3C029148.2 Cucumis melo HOM05D005146 ORTHO05D006752 4.5e-46 189.1 180 55.6
BolC8t52160H Brassica oleracea HOM05D005146 ORTHO05D032927 5.8e-38 162.2 265 43.0
Medtr3g114210 Medicago truncatula HOM05D005146 ORTHO05D006752 7.6e-38 161.8 148 63.5
BcaC07g41610 Brassica carinata HOM05D005146 ORTHO05D032927 2.4e-36 156.8 269 41.6
Lj4A797T60 Lonicera japonica HOM05D005146 ORTHO05D006752 6.0e-35 152.1 90 77.8
C08p46100 Brassica napus HOM05D005146 ORTHO05D032927 2.8e-32 143.3 261 40.6
BcaC04g20388 Brassica carinata HOM05D005146 ORTHO05D006752 2.4e-31 140.2 185 47.0
Lsat_1_v5_gn_2_8581 Lactuca sativa HOM05D000202 ORTHO05D000117 2.9e-29 133.3 135 49.6
Lsat_1_v5_gn_2_8661 Lactuca sativa HOM05D000202 ORTHO05D000117 2.5e-28 130.2 135 48.9
Oeu039054.1 Olea europaea HOM05D000784 ORTHO05D000116 1.2e-27 127.9 79 70.9
SEGI_30125 Sequoiadendron giganteum HOM05D005146 ORTHO05D006752 5.1e-26 122.5 92 65.2
CAN.G1688.3 Capsicum annuum HOM05D005146 ORTHO05D011342 1.4e-18 97.8 56 76.8
MELO3C032066.2 Cucumis melo HOM05D005146 ORTHO05D006752 3.3e-17 93.2 73 63.0
BcaNung04119 Brassica carinata HOM05D001941 ORTHO05D002198 1.4e-12 77.8 45 77.8
Actinidia16979 Actinidia chinensis HOM05D005146 ORTHO05D006752 1.6e-11 74.3 78 51.3
MELO3C033356.2 Cucumis melo HOM05D005146 ORTHO05D166957 2.8e-08 63.5 49 61.2
Cfa017682 Carpinus fangiana HOM05D005146 ORTHO05D123472 2.6e-06 57.0 45 68.9


User provided reference genes

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