Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN27G1942 Fragaria x ananassa HOM05D006313 ORTHO05D007853 0.0e+00 1685.6 811 100.0
FAN20G0447 Fragaria x ananassa HOM05D006313 ORTHO05D007853 0.0e+00 1640.2 839 95.1
FAN15G3120 Fragaria x ananassa HOM05D006313 ORTHO05D007853 0.0e+00 1574.7 834 92.2
RcHm_v2.0_Chr6g0304381 Rosa chinensis HOM05D006313 ORTHO05D007853 0.0e+00 1528.5 830 89.5
Prupe.1G353800 Prunus persica HOM05D006313 ORTHO05D007853 0.0e+00 1380.2 835 81.0
MD08G1002100 Malus domestica HOM05D006313 ORTHO05D007853 0.0e+00 1362.4 835 79.3
CiPaw.07G138200 Carya illinoinensis HOM05D006313 ORTHO05D007853 0.0e+00 1256.9 835 72.8
Cfa014086 Carpinus fangiana HOM05D006313 ORTHO05D007853 0.0e+00 1248.4 812 73.9
QL02p014292 Quercus lobata HOM05D006313 ORTHO05D007853 0.0e+00 1244.2 834 72.2
Dinv31948 Davidia involucrata HOM05D006313 ORTHO05D007853 0.0e+00 1236.9 836 71.9
CANSAT25G3184 Cannabis sativa HOM05D006313 ORTHO05D007853 0.0e+00 1224.9 843 70.9
GSVIVG01013365001 Vitis vinifera HOM05D006313 ORTHO05D007853 0.0e+00 1217.6 836 70.6
FvH4_2g37320 Fragaria vesca HOM05D006313 ORTHO05D007853 0.0e+00 1214.9 642 93.1
Manes.18G004800 Manihot esculenta HOM05D006313 ORTHO05D007853 0.0e+00 1210.7 836 69.9
Potri.002G010100 Populus trichocarpa HOM05D006313 ORTHO05D007853 0.0e+00 1206.8 833 70.2
Atru.chr13.141 Acer truncatum HOM05D006313 ORTHO05D007853 0.0e+00 1206.4 837 69.8
Potri.005G251300 Populus trichocarpa HOM05D006313 ORTHO05D007853 0.0e+00 1205.7 836 70.9
Hma1.2p1_0507F.1_g168580 Hydrangea macrophylla HOM05D006313 ORTHO05D007853 0.0e+00 1198.3 852 68.8
Ciclev10003249m.g Citrus clementina HOM05D006313 ORTHO05D007853 0.0e+00 1197.6 837 70.1
Sabra02G0007500 Salix brachista HOM05D006313 ORTHO05D007853 0.0e+00 1196.0 833 69.6
TWI12G0830 Tripterygium wilfordii HOM05D006313 ORTHO05D007853 0.0e+00 1194.9 836 69.6
Sabra05G0194600 Salix brachista HOM05D006313 ORTHO05D007853 0.0e+00 1192.9 836 69.0
Rhsim07G0255100 Rhododendron simsii HOM05D006313 ORTHO05D007853 0.0e+00 1186.0 836 68.9
TAR381G0755 Trochodendron aralioides HOM05D006313 ORTHO05D007853 0.0e+00 1183.7 834 69.3
Thecc.08G059800 Theobroma cacao HOM05D006313 ORTHO05D007853 0.0e+00 1173.3 836 68.4
vmacro04407 Vaccinium macrocarpon HOM05D006313 ORTHO05D007853 0.0e+00 1168.3 871 66.0
MELO3C017021.2 Cucumis melo HOM05D006313 ORTHO05D007853 0.0e+00 1167.9 835 67.5
CsaV3_4G037230 Cucumis sativus L. HOM05D006313 ORTHO05D007853 0.0e+00 1166.0 835 67.4
Haze_22787 Corylus avellana HOM05D006313 ORTHO05D007853 0.0e+00 1165.2 917 64.3
PGR083G2847 Punica granatum HOM05D006313 ORTHO05D007853 0.0e+00 1161.0 836 67.9
Gorai.009G187700 Gossypium raimondii HOM05D006313 ORTHO05D007853 0.0e+00 1158.3 836 68.3
Gohir.D05G182400 Gossypium hirsutum HOM05D006313 ORTHO05D007853 0.0e+00 1154.8 836 67.9
Gohir.A05G179200 Gossypium hirsutum HOM05D006313 ORTHO05D007853 0.0e+00 1154.0 836 67.9
CSS0043965 Camellia sinensis var. sinensis HOM05D006313 ORTHO05D007853 0.0e+00 1150.6 836 67.6
Oeu000694.1 Olea europaea HOM05D006313 ORTHO05D007853 0.0e+00 1146.3 836 66.4
Duzib093G1521 Durio zibethinus HOM05D006313 ORTHO05D007853 0.0e+00 1135.9 836 67.5
Aqoxy5G01036 Aquilegia oxysepala HOM05D006313 ORTHO05D007853 0.0e+00 1135.6 834 65.2
Lsat_1_v5_gn_9_45201 Lactuca sativa HOM05D006313 ORTHO05D007853 0.0e+00 1130.5 839 66.0
Migut.N02954 Erythranthe guttata HOM05D006313 ORTHO05D007853 0.0e+00 1126.3 836 66.4
Cc10_g00630 Coffea canephora HOM05D006313 ORTHO05D007853 0.0e+00 1116.7 836 64.4
Nn5g30955 Nelumbo nucifera HOM05D006313 ORTHO05D007853 0.0e+00 1116.7 803 68.0
EL10Ac1g01951 Beta vulgaris HOM05D006313 ORTHO05D007853 0.0e+00 1115.1 843 64.3
DCAR_013918 Daucus carota HOM05D006313 ORTHO05D007853 0.0e+00 1107.8 840 64.0
ECA232G0012 Erigeron canadensis HOM05D006313 ORTHO05D007853 0.0e+00 1104.0 839 65.3
Eucgr.F01772 Eucalyptus grandis HOM05D006313 ORTHO05D007853 0.0e+00 1102.4 836 65.2
Nitab4.5_0000588g0050 Nicotiana tabacum HOM05D006313 ORTHO05D007853 0.0e+00 1102.0 856 64.3
Actinidia37918 Actinidia chinensis HOM05D006313 ORTHO05D007853 0.0e+00 1099.0 787 68.5
PGSC0003DMG400009982 Solanum tuberosum HOM05D006313 ORTHO05D007853 0.0e+00 1098.2 837 64.8
CAN.G311.119 Capsicum annuum HOM05D006313 ORTHO05D007853 0.0e+00 1097.0 837 64.3
HanXRQChr15g0492461 Helianthus annuus HOM05D006313 ORTHO05D007853 0.0e+00 1097.0 838 65.2
MBI08_g24269_MAGBIO Magnolia biondii HOM05D006313 ORTHO05D007853 0.0e+00 1096.6 835 64.6
Sopen04g036010 Solanum pennellii HOM05D006313 ORTHO05D007853 0.0e+00 1096.3 837 64.8
VMungo0647G1480 Vigna mungo HOM05D006313 ORTHO05D007853 0.0e+00 1093.2 830 64.8
Glyma.14G223400 Glycine max HOM05D006313 ORTHO05D007853 0.0e+00 1091.6 833 64.9
Hund05111 Selenicereus undatus HOM05D006313 ORTHO05D007853 0.0e+00 1090.9 878 60.6
AT2G30600 Arabidopsis thaliana HOM05D006313 ORTHO05D007853 0.0e+00 1090.5 836 63.8
PSO170G0983 Papaver somniferum HOM05D006313 ORTHO05D007853 0.0e+00 1088.6 835 63.5
PSO210G6994 Papaver somniferum HOM05D006313 ORTHO05D007853 0.0e+00 1088.2 839 63.3
THA.LOC104825426 Tarenaya hassleriana HOM05D006313 ORTHO05D007853 0.0e+00 1087.4 833 63.4
Thhalv10016264m.g Eutrema salsugineum HOM05D006313 ORTHO05D007853 0.0e+00 1086.6 835 64.0
Medtr5g066730 Medicago truncatula HOM05D006313 ORTHO05D007853 0.0e+00 1082.8 831 63.7
Lj4A10G75 Lonicera japonica HOM05D006313 ORTHO05D007853 0.0e+00 1082.0 817 66.6
Peaxi162Scf00711g00530 Petunia axillaris HOM05D006313 ORTHO05D007853 0.0e+00 1081.2 837 64.2
Aa31LG5G6170 Aethionema arabicum HOM05D006313 ORTHO05D007853 0.0e+00 1080.9 835 63.2
AL4G25490 Arabidopsis lyrata HOM05D006313 ORTHO05D007853 0.0e+00 1077.8 836 63.4
Phvul.001G001100 Phaseolus vulgaris HOM05D006313 ORTHO05D007853 0.0e+00 1076.6 831 63.8
Lj5g0009044 Lotus japonicus HOM05D006313 ORTHO05D007853 0.0e+00 1075.8 832 63.9
BraA04t17863Z Brassica rapa HOM05D006313 ORTHO05D007853 1.1e-310 1069.7 850 62.9
A04p23350 Brassica napus HOM05D006313 ORTHO05D007853 1.9e-310 1068.9 832 63.3
SGA_v2.0_scaffold54G19673 Striga asiatica HOM05D006313 ORTHO05D007853 4.2e-310 1067.8 839 62.6
BolC4t27473H Brassica oleracea HOM05D006313 ORTHO05D007853 5.5e-310 1067.4 853 62.6
Sp4g13150 Schrenkiella parvula HOM05D006313 ORTHO05D007853 1.2e-309 1066.2 836 62.3
C04p59650 Brassica napus HOM05D006313 ORTHO05D007853 2.1e-309 1065.4 832 63.1
AUR62040798 Chenopodium quinoa HOM05D006313 ORTHO05D007853 1.1e-307 1059.7 835 62.3
arahy.Tifrunner.gnm1.ann1.N9IWSS Arachis hypogaea HOM05D006313 ORTHO05D007853 2.5e-307 1058.5 839 63.2
arahy.Tifrunner.gnm1.ann1.TM2XQH Arachis hypogaea HOM05D006313 ORTHO05D007853 2.5e-307 1058.5 839 63.2
Carub.0004s1176 Capsella rubella HOM05D006313 ORTHO05D007853 5.7e-307 1057.4 836 62.1
Lalb_Chr01g0008341 Lupinus albus HOM05D006313 ORTHO05D007853 6.9e-305 1050.4 838 62.4
Ca_25243_v3 Cicer arietinum L. HOM05D006313 ORTHO05D007853 1.2e-304 1049.7 828 62.7
Sed0015221 Sechium edule HOM05D006313 ORTHO05D007853 4.5e-304 1047.7 742 69.4
CARHR124070 Cardamine hirsuta HOM05D006313 ORTHO05D007853 3.0e-300 1035.0 818 62.0
Cpa.g.sc26.189 Carica papaya HOM05D006313 ORTHO05D007853 1.2e-288 996.5 741 66.5
BcaB06g28382 Brassica carinata HOM05D006313 ORTHO05D007853 1.5e-286 989.6 834 60.3
CDE04G1532 Ceratophyllum demersum HOM05D006313 ORTHO05D007853 2.5e-286 988.8 837 57.8
SHI07994 Sapria himalayana HOM05D006313 ORTHO05D007853 2.1e-285 985.7 837 60.1
ATR0661G251 Amborella trichopoda HOM05D006313 ORTHO05D007853 4.1e-281 971.5 836 57.3
HPP92_022696 Vanilla planifolia HOM05D006313 ORTHO05D007853 3.2e-278 961.8 837 57.7
Psat2g064920 Pisum sativum HOM05D006313 ORTHO05D007853 1.8e-273 946.0 738 63.4
COL.COLO4_05223 Corchorus olitorius HOM05D006313 ORTHO05D007853 1.3e-255 886.7 633 69.2
Hma1.2p1_0507F.1_g168570 Hydrangea macrophylla HOM05D006313 ORTHO05D007853 6.0e-240 834.7 628 65.8
CDE02G1829 Ceratophyllum demersum HOM05D006313 ORTHO05D007853 8.9e-236 820.8 836 51.0
TPR.G38702 Trifolium pratense HOM05D006313 ORTHO05D007853 2.1e-221 773.1 637 60.8
unitig_22.g5883 Utricularia gibba HOM05D006313 ORTHO05D007853 3.7e-213 745.7 646 57.0
AagrBONN_evm.TU.Sc2ySwM_228.121 Anthoceros agrestis HOM05D006313 ORTHO05D007853 1.3e-205 720.7 854 44.8
Pp3c3_5520 Physcomitrium patens HOM05D006313 ORTHO05D007853 9.7e-190 667.9 857 44.3
SMO361G0777 Selaginella moellendorffii HOM05D006313 ORTHO05D007853 2.6e-187 659.8 859 42.1
Solyc04g082420.3 Solanum lycopersicum HOM05D006313 ORTHO05D007853 3.3e-182 642.9 463 68.0
Sc02g0009120 Simmondsia chinensis HOM05D006313 ORTHO05D007853 2.7e-176 623.2 454 66.5
AUR62036859 Chenopodium quinoa HOM05D006313 ORTHO05D007853 2.0e-171 607.1 561 54.9
Manes.18G005201 Manihot esculenta HOM05D006313 ORTHO05D007853 1.4e-143 514.6 402 62.4
Os05g0345500 Oryza sativa ssp. japonica HOM05D006313 ORTHO05D007853 8.3e-141 505.4 462 53.5
Mapoly0001s0491 Marchantia polymorpha HOM05D006313 ORTHO05D007853 8.0e-136 488.8 612 42.5
SEGI_26691 Sequoiadendron giganteum HOM05D006313 ORTHO05D007853 2.7e-131 473.8 493 50.1
Zm00001eb379580 Zea mays HOM05D006313 ORTHO05D007853 3.5e-131 473.4 475 50.1
CSS0049724 Camellia sinensis var. sinensis HOM05D006313 ORTHO05D007853 2.0e-126 457.6 421 58.7
Sc02g0009110 Simmondsia chinensis HOM05D006313 ORTHO05D007853 4.9e-117 426.4 315 65.1
Cfa012651 Carpinus fangiana HOM05D006313 ORTHO05D007853 1.8e-111 407.9 377 58.6
CSS0044355 Camellia sinensis var. sinensis HOM05D006313 ORTHO05D007853 2.4e-87 327.8 336 53.9
SEGI_09974 Sequoiadendron giganteum HOM05D006313 ORTHO05D007853 1.0e-82 312.4 268 57.8
TPR.G21513 Trifolium pratense HOM05D006313 ORTHO05D007853 1.8e-79 301.6 193 71.5
Sabra05G0194400 Salix brachista HOM05D006313 ORTHO05D007853 9.4e-76 289.3 263 56.3
CBR_g18852 Chara braunii HOM05D006313 ORTHO05D007853 3.6e-75 287.3 499 37.9
ClCG11G018700 Citrullus lanatus HOM05D006313 ORTHO05D007853 3.9e-58 230.7 146 72.6
Sabra05G0194300 Salix brachista HOM05D006313 ORTHO05D007853 4.8e-56 223.8 149 71.1
SEGI_14381 Sequoiadendron giganteum HOM05D006313 ORTHO05D007853 1.4e-47 195.7 191 53.4
Cpa.g.sc801.5 Carica papaya HOM05D006313 ORTHO05D007853 4.7e-43 180.6 123 64.2
Cre03.g158850 Chlamydomonas reinhardtii HOM05D006313 ORTHO05D007853 1.3e-40 172.6 182 44.0
CBR_g6381 Chara braunii HOM05D006313 ORTHO05D007853 8.0e-35 153.3 147 49.7
PRCOL_00004404 Prasinoderma coloniale HOM05D006313 ORTHO05D007853 8.0e-35 153.3 893 22.8
unitig_22.g5882 Utricularia gibba HOM05D006313 ORTHO05D007853 8.3e-32 143.3 87 71.3
SEGI_13417 Sequoiadendron giganteum HOM05D006313 ORTHO05D007853 7.8e-30 136.7 72 80.6
COL.COLO4_05222 Corchorus olitorius HOM05D006313 ORTHO05D007853 5.8e-25 120.6 54 92.6
SEGI_38873 Sequoiadendron giganteum HOM05D006313 ORTHO05D007853 2.7e-22 111.7 194 35.6
arahy.Tifrunner.gnm1.ann1.9M02QF Arachis hypogaea HOM05D000431 ORTHO05D007853 4.6e-14 84.3 82 46.3
BolC3t20551H Brassica oleracea HOM05D006313 ORTHO05D007853 8.4e-08 63.5 52 55.8


User provided reference genes

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