Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN27G1906 Fragaria x ananassa HOM05D000312 ORTHO05D000221 9.3e-80 300.4 186 100.0
FvH4_5g20540 Fragaria vesca HOM05D000312 ORTHO05D000221 3.0e-30 136.0 75 88.0
FAN18G1664 Fragaria x ananassa HOM05D000312 ORTHO05D000221 3.0e-30 136.0 75 88.0
FAN04G0746 Fragaria x ananassa HOM05D000312 ORTHO05D000221 5.7e-29 131.7 75 85.3
FvH4_1g01930 Fragaria vesca HOM05D001268 ORTHO05D001577 1.7e-12 77.0 72 61.1
FAN19G2322 Fragaria x ananassa HOM05D001268 ORTHO05D001577 1.7e-12 77.0 72 61.1
Prupe.1G384700 Prunus persica HOM05D000312 ORTHO05D000221 3.5e-10 69.3 87 44.8
RcHm_v2.0_Chr2g0086961 Rosa chinensis HOM05D001268 ORTHO05D001577 1.0e-09 67.8 38 86.8
RcHm_v2.0_Chr7g0205971 Rosa chinensis HOM05D000312 ORTHO05D000221 1.3e-09 67.4 75 49.3
MD00G1039500 Malus domestica HOM05D000312 ORTHO05D000221 3.9e-09 65.9 86 43.0
Prupe.8G149000 Prunus persica HOM05D000312 ORTHO05D000221 3.9e-09 65.9 67 52.2
Phvul.001G017300 Phaseolus vulgaris HOM05D000312 ORTHO05D000221 8.6e-09 64.7 76 43.4
AUR62041668 Chenopodium quinoa HOM05D000312 ORTHO05D000221 1.1e-08 64.3 78 42.3
FAN15G3436 Fragaria x ananassa HOM05D000312 ORTHO05D000221 1.1e-08 64.3 80 43.8
Glyma.17G247500 Glycine max HOM05D000312 ORTHO05D000221 2.5e-08 63.2 76 42.1
MD05G1103900 Malus domestica HOM05D000312 ORTHO05D000221 2.5e-08 63.2 78 43.6
AUR62033859 Chenopodium quinoa HOM05D000312 ORTHO05D000221 4.3e-08 62.4 78 41.0
Medtr1g021825 Medicago truncatula HOM05D000312 ORTHO05D000221 5.6e-08 62.0 76 40.8
PGR031G1968 Punica granatum HOM05D000312 ORTHO05D000221 1.2e-07 60.8 75 41.3
RcHm_v2.0_Chr6g0248851 Rosa chinensis HOM05D000312 ORTHO05D000221 1.2e-07 60.8 70 47.1
RcHm_v2.0_Chr6g0267131 Rosa chinensis HOM05D000312 ORTHO05D000221 1.2e-07 60.8 74 43.2
Ca_13329_v3 Cicer arietinum L. HOM05D000312 ORTHO05D000221 1.6e-07 60.5 76 42.1
MD08G1037400 Malus domestica HOM05D000312 ORTHO05D000221 1.6e-07 60.5 86 39.5
RcHm_v2.0_Chr6g0295991 Rosa chinensis HOM05D000312 ORTHO05D000221 1.6e-07 60.5 87 41.4
Cfa018451 Carpinus fangiana HOM05D000312 ORTHO05D000221 2.1e-07 60.1 77 41.6
FvH4_2g03500 Fragaria vesca HOM05D000312 ORTHO05D000221 2.1e-07 60.1 80 42.5
Prupe.8G148900 Prunus persica HOM05D000312 ORTHO05D000221 2.1e-07 60.1 71 45.1
Psat6g025480 Pisum sativum HOM05D000312 ORTHO05D000221 2.8e-07 59.7 127 32.3
RcHm_v2.0_Chr6g0248651 Rosa chinensis HOM05D000312 ORTHO05D000221 2.8e-07 59.7 76 46.1
SGA_v2.0_scaffold24G10274 Striga asiatica HOM05D000312 ORTHO05D000221 3.6e-07 59.3 76 42.1
Haze_17615 Corylus avellana HOM05D000312 ORTHO05D000221 6.2e-07 58.5 76 39.5
Medtr1g021820 Medicago truncatula HOM05D000312 ORTHO05D000221 6.2e-07 58.5 76 40.8
FAN08G0878 Fragaria x ananassa HOM05D000312 ORTHO05D000221 8.0e-07 58.2 65 44.6
RcHm_v2.0_Chr7g0188641 Rosa chinensis HOM05D000312 ORTHO05D000221 8.0e-07 58.2 68 44.1
arahy.Tifrunner.gnm1.ann1.S3SMBV Arachis hypogaea HOM05D000312 ORTHO05D000221 1.1e-06 57.8 76 38.2
arahy.Tifrunner.gnm1.ann1.X6923X Arachis hypogaea HOM05D000312 ORTHO05D000221 1.1e-06 57.8 76 38.2
Ciclev10001223m.g Citrus clementina HOM05D000312 ORTHO05D000221 1.1e-06 57.8 76 40.8
MD05G1157800 Malus domestica HOM05D000312 ORTHO05D000221 1.1e-06 57.8 76 42.1
RcHm_v2.0_Chr3g0473701 Rosa chinensis HOM05D000312 ORTHO05D000221 1.1e-06 57.8 70 44.3
FvH4_2g27130 Fragaria vesca HOM05D000312 ORTHO05D000221 1.4e-06 57.4 68 44.1
FvH4_3g20160 Fragaria vesca HOM05D000312 ORTHO05D000221 1.4e-06 57.4 75 44.0
FvH4_5g09540 Fragaria vesca HOM05D000312 ORTHO05D000221 1.4e-06 57.4 69 40.6
FvH4_5g09560 Fragaria vesca HOM05D000312 ORTHO05D000221 1.4e-06 57.4 65 44.6
FvH4_5g14273 Fragaria vesca HOM05D000312 ORTHO05D000221 1.4e-06 57.4 68 45.6
FAN04G2981 Fragaria x ananassa HOM05D000312 ORTHO05D000221 1.4e-06 57.4 65 44.6
FAN04G3072 Fragaria x ananassa HOM05D000312 ORTHO05D000221 1.4e-06 57.4 69 40.6
FAN18G2995 Fragaria x ananassa HOM05D000312 ORTHO05D000221 1.4e-06 57.4 65 44.6
FAN18G3664 Fragaria x ananassa HOM05D000312 ORTHO05D000221 1.4e-06 57.4 69 40.6
FAN21G2862 Fragaria x ananassa HOM05D000312 ORTHO05D000221 1.4e-06 57.4 75 44.0
FAN24G3184 Fragaria x ananassa HOM05D000312 ORTHO05D000221 1.4e-06 57.4 68 44.1
FAN25G2112 Fragaria x ananassa HOM05D000312 ORTHO05D000221 1.4e-06 57.4 75 44.0
RcHm_v2.0_Chr6g0300311 Rosa chinensis HOM05D000312 ORTHO05D000221 1.4e-06 57.4 78 41.0
Sopen04g033380 Solanum pennellii HOM05D000312 ORTHO05D000221 1.4e-06 57.4 78 41.0
PGSC0003DMG400016882 Solanum tuberosum HOM05D000312 ORTHO05D000221 1.4e-06 57.4 78 41.0
FvH4_2g03062 Fragaria vesca HOM05D007346 ORTHO05D009044 1.8e-06 57.0 75 41.3
Medtr5g040850 Medicago truncatula HOM05D000312 ORTHO05D000221 1.8e-06 57.0 75 44.0
RcHm_v2.0_Chr5g0033951 Rosa chinensis HOM05D000312 ORTHO05D000221 1.8e-06 57.0 75 42.7
Sabra14G0028900 Salix brachista HOM05D000312 ORTHO05D000221 1.8e-06 57.0 76 40.8
Oeu009594.1 Olea europaea HOM05D000312 ORTHO05D000221 2.3e-06 56.6 76 43.4
RcHm_v2.0_Chr5g0033971 Rosa chinensis HOM05D000312 ORTHO05D000221 2.3e-06 56.6 75 44.0
CiPaw.16G053000 Carya illinoinensis HOM05D000312 ORTHO05D000221 3.1e-06 56.2 76 39.5
FAN13G2346 Fragaria x ananassa HOM05D000312 ORTHO05D000221 3.1e-06 56.2 65 43.1
FAN20G3043 Fragaria x ananassa HOM05D000312 ORTHO05D000221 3.1e-06 56.2 78 42.3
FAN27G0290 Fragaria x ananassa HOM05D000312 ORTHO05D000221 3.1e-06 56.2 78 42.3
MD05G1157700 Malus domestica HOM05D000312 ORTHO05D000221 3.1e-06 56.2 82 41.5
Medtr1g011410 Medicago truncatula HOM05D000312 ORTHO05D000221 3.1e-06 56.2 82 35.4
Psat6g010840 Pisum sativum HOM05D000312 ORTHO05D000221 3.1e-06 56.2 76 38.2
RcHm_v2.0_Chr5g0049261 Rosa chinensis HOM05D000312 ORTHO05D000221 3.1e-06 56.2 68 45.6
RcHm_v2.0_Chr7g0188631 Rosa chinensis HOM05D000312 ORTHO05D000221 3.1e-06 56.2 65 44.6
RcHm_v2.0_Chr6g0248871 Rosa chinensis HOM05D000312 ORTHO05D000221 4.0e-06 55.8 69 49.3
Atru.chr13.564 Acer truncatum HOM05D000312 ORTHO05D000221 5.2e-06 55.5 77 37.7
CAN.G371.120 Capsicum annuum HOM05D000312 ORTHO05D000221 5.2e-06 55.5 78 39.7
Dinv36032 Davidia involucrata HOM05D000312 ORTHO05D000221 5.2e-06 55.5 76 42.1
Medtr1g011400 Medicago truncatula HOM05D000312 ORTHO05D000221 5.2e-06 55.5 82 40.2
Nitab4.5_0000110g0120 Nicotiana tabacum HOM05D000312 ORTHO05D000221 5.2e-06 55.5 78 39.7
Nitab4.5_0012474g0030 Nicotiana tabacum HOM05D000312 ORTHO05D000221 5.2e-06 55.5 78 39.7
unitig_37.g12971 Utricularia gibba HOM05D000312 ORTHO05D000221 5.2e-06 55.5 76 40.8
FAN08G0434 Fragaria x ananassa HOM05D000312 ORTHO05D000221 6.8e-06 55.1 64 42.2
Medtr1g013580 Medicago truncatula HOM05D000312 ORTHO05D000221 6.8e-06 55.1 74 36.5
Medtr2g047872 Medicago truncatula HOM05D000312 ORTHO05D000221 6.8e-06 55.1 78 37.2
QL02p007238 Quercus lobata HOM05D000312 ORTHO05D000221 6.8e-06 55.1 71 38.0
RcHm_v2.0_Chr6g0248881 Rosa chinensis HOM05D000312 ORTHO05D000221 6.8e-06 55.1 69 49.3
Sc15g0004840 Simmondsia chinensis HOM05D000312 ORTHO05D000221 6.8e-06 55.1 88 33.0
Peaxi162Scf02754g00015 Petunia axillaris HOM05D000312 ORTHO05D000221 8.9e-06 54.7 78 39.7


User provided reference genes

Program Settings