Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN27G1876 Fragaria x ananassa HOM05D000561 ORTHO05D008162 1.2e-161 573.2 297 100.0
FAN20G2490 Fragaria x ananassa HOM05D000561 ORTHO05D008162 7.8e-137 490.7 365 75.9
FvH4_2g34880 Fragaria vesca HOM05D000561 ORTHO05D008162 6.8e-133 477.6 286 91.3
RcHm_v2.0_Chr6g0307161 Rosa chinensis HOM05D000561 ORTHO05D008162 1.9e-130 469.5 305 84.6
MD08G1106500 Malus domestica HOM05D000561 ORTHO05D008162 6.8e-117 424.5 306 74.5
Prupe.1G440800 Prunus persica HOM05D000561 ORTHO05D008162 1.4e-114 416.8 310 73.9
MD15G1087100 Malus domestica HOM05D000561 ORTHO05D008162 1.9e-114 416.4 309 72.8
Ciclev10001965m.g Citrus clementina HOM05D000561 ORTHO05D008162 2.6e-108 396.0 315 67.3
Atru.chr13.629 Acer truncatum HOM05D000561 ORTHO05D008162 1.4e-106 390.2 311 69.1
Atru.chr13.633 Acer truncatum HOM05D000561 ORTHO05D008162 1.4e-106 390.2 311 69.1
Potri.014G034700 Populus trichocarpa HOM05D000561 ORTHO05D008162 2.1e-105 386.3 288 71.2
QL02p005893 Quercus lobata HOM05D000561 ORTHO05D008162 1.3e-104 383.6 321 67.9
TWI56G0230 Tripterygium wilfordii HOM05D000561 ORTHO05D008162 8.7e-104 380.9 296 70.3
Manes.05G170800 Manihot esculenta HOM05D000561 ORTHO05D008162 1.1e-103 380.6 278 71.9
CiPaw.16G047800 Carya illinoinensis HOM05D000561 ORTHO05D008162 2.8e-102 375.9 274 72.6
Dinv39338 Davidia involucrata HOM05D000561 ORTHO05D008162 2.8e-102 375.9 304 68.4
Duzib116G0222 Durio zibethinus HOM05D000561 ORTHO05D008162 2.4e-101 372.9 308 67.5
GSVIVG01009559001 Vitis vinifera HOM05D000561 ORTHO05D008162 3.1e-101 372.5 300 68.3
Sabra14G0024600 Salix brachista HOM05D000561 ORTHO05D008162 6.9e-101 371.3 280 71.1
TAR628G0509 Trochodendron aralioides HOM05D000561 ORTHO05D008162 1.2e-100 370.5 287 69.7
Gorai.009G209500 Gossypium raimondii HOM05D000561 ORTHO05D008162 1.5e-100 370.2 311 65.6
Duzib093G1567 Durio zibethinus HOM05D000561 ORTHO05D008162 4.4e-100 368.6 309 64.1
Hma1.2p1_0260F.1_g104740 Hydrangea macrophylla HOM05D000561 ORTHO05D008162 4.4e-100 368.6 302 69.2
Haze_17567 Corylus avellana HOM05D000561 ORTHO05D008162 7.6e-100 367.9 288 70.8
Nn5g30201 Nelumbo nucifera HOM05D000561 ORTHO05D000514 7.6e-100 367.9 263 73.4
CSS0036187 Camellia sinensis var. sinensis HOM05D000561 ORTHO05D008162 9.9e-100 367.5 258 75.6
Gohir.D05G203500 Gossypium hirsutum HOM05D000561 ORTHO05D008162 9.9e-100 367.5 311 65.9
Sed0001510 Sechium edule HOM05D000561 ORTHO05D008162 1.7e-99 366.7 307 64.8
Actinidia22609 Actinidia chinensis HOM05D000561 ORTHO05D008162 2.2e-99 366.3 310 67.1
TAR625G0340 Trochodendron aralioides HOM05D000561 ORTHO05D008162 1.1e-98 364.0 290 67.9
Lj1g0015016 Lotus japonicus HOM05D000561 ORTHO05D008162 3.2e-98 362.5 268 72.0
Lalb_Chr08g0245641 Lupinus albus HOM05D000561 ORTHO05D008162 4.2e-98 362.1 313 64.5
Phvul.009G063100 Phaseolus vulgaris HOM05D000561 ORTHO05D008162 7.1e-98 361.3 308 66.2
Rhsim06G0046600 Rhododendron simsii HOM05D000561 ORTHO05D008162 7.1e-98 361.3 300 67.0
Gohir.A05G200200 Gossypium hirsutum HOM05D000561 ORTHO05D008162 4.6e-97 358.6 311 65.3
Cc10_g03990 Coffea canephora HOM05D000561 ORTHO05D008162 6.0e-97 358.2 266 68.8
Glyma.06G037300 Glycine max HOM05D000561 ORTHO05D008162 7.8e-97 357.8 308 65.3
PSO675G5921 Papaver somniferum HOM05D000561 ORTHO05D008162 1.0e-96 357.5 279 68.5
Thecc.08G013400 Theobroma cacao HOM05D000561 ORTHO05D008162 1.3e-96 357.1 281 69.0
vmacro21557 Vaccinium macrocarpon HOM05D000561 ORTHO05D008162 2.3e-96 356.3 296 66.9
arahy.Tifrunner.gnm1.ann1.YYC1CT Arachis hypogaea HOM05D000561 ORTHO05D008162 3.9e-96 355.5 268 70.9
MELO3C010892.2 Cucumis melo HOM05D000561 ORTHO05D008162 1.5e-95 353.6 276 67.0
Medtr3g101350 Medicago truncatula HOM05D000561 ORTHO05D008162 4.3e-95 352.1 277 67.1
PSO541G5839 Papaver somniferum HOM05D000561 ORTHO05D008162 4.3e-95 352.1 285 67.7
MBI06_g08185_MAGBIO Magnolia biondii HOM05D000561 ORTHO05D008162 2.8e-94 349.4 328 59.8
Manes.18G034000 Manihot esculenta HOM05D000561 ORTHO05D008162 4.8e-94 348.6 269 69.9
TPR.G10521 Trifolium pratense HOM05D000561 ORTHO05D008162 8.1e-94 347.8 284 65.5
CsaV3_2G028140 Cucumis sativus L. HOM05D000561 ORTHO05D008162 1.8e-93 346.7 311 63.3
Nitab4.5_0005549g0040 Nicotiana tabacum HOM05D000561 ORTHO05D008162 2.4e-93 346.3 259 69.5
MSTRG.1332 Avicennia marina HOM05D000561 ORTHO05D008162 4.0e-93 345.5 289 65.1
CAN.G371.47 Capsicum annuum HOM05D000561 ORTHO05D008162 1.2e-92 344.0 267 65.9
CDE06G2652 Ceratophyllum demersum HOM05D000561 ORTHO05D008162 1.5e-92 343.6 286 65.0
Nitab4.5_0000068g0440 Nicotiana tabacum HOM05D000561 ORTHO05D008162 1.5e-92 343.6 259 69.1
COL.COLO4_26457 Corchorus olitorius HOM05D000561 ORTHO05D008162 2.0e-92 343.2 243 71.2
Psat5g044440 Pisum sativum HOM05D000561 ORTHO05D008162 2.0e-92 343.2 311 62.1
Sp4g07760 Schrenkiella parvula HOM05D000561 ORTHO05D008162 2.0e-92 343.2 293 63.8
SalBow7G2378 Salvia bowleyana HOM05D000561 ORTHO05D008162 2.6e-92 342.8 317 58.0
CARHR050650 Cardamine hirsuta HOM05D000561 ORTHO05D008162 3.4e-92 342.4 270 66.7
ClCG08G015630 Citrullus lanatus HOM05D000561 ORTHO05D008162 4.5e-92 342.0 309 62.8
HanXRQChr02g0038741 Helianthus annuus HOM05D000561 ORTHO05D008162 2.2e-91 339.7 268 65.3
Carub.0003s2738 Capsella rubella HOM05D000561 ORTHO05D008162 2.9e-91 339.3 261 67.0
Sopen04g032930 Solanum pennellii HOM05D000561 ORTHO05D008162 2.9e-91 339.3 266 65.8
AL4G19400 Arabidopsis lyrata HOM05D000561 ORTHO05D008162 3.8e-91 339.0 302 63.2
Solyc04g079320.4 Solanum lycopersicum HOM05D000561 ORTHO05D008162 3.8e-91 339.0 261 66.3
ECA232G0584 Erigeron canadensis HOM05D000561 ORTHO05D008162 1.1e-90 337.4 259 66.4
Ca_15966_v3 Cicer arietinum L. HOM05D000561 ORTHO05D008162 1.4e-90 337.0 265 69.4
Migut.C00604 Erythranthe guttata HOM05D000561 ORTHO05D008162 1.4e-90 337.0 294 63.6
THA.LOC104803685 Tarenaya hassleriana HOM05D000561 ORTHO05D008162 3.2e-90 335.9 265 64.5
Eucgr.F02370 Eucalyptus grandis HOM05D000561 ORTHO05D008162 4.2e-90 335.5 235 71.9
Aa31LG10G9880 Aethionema arabicum HOM05D000561 ORTHO05D008162 1.2e-89 334.0 288 64.6
A09p55150 Brassica napus HOM05D000561 ORTHO05D008162 1.2e-89 334.0 276 64.1
Sabra02G0100300 Salix brachista HOM05D000561 ORTHO05D008162 1.6e-89 333.6 266 69.5
DCAR_019467 Daucus carota HOM05D000561 ORTHO05D008162 2.1e-89 333.2 294 62.9
AT2G26540 Arabidopsis thaliana HOM05D000561 ORTHO05D008162 2.7e-89 332.8 316 60.4
C08p38080 Brassica napus HOM05D000561 ORTHO05D008162 2.7e-89 332.8 276 64.1
HanXRQChr09g0268001 Helianthus annuus HOM05D000561 ORTHO05D008162 2.7e-89 332.8 267 65.5
BolC8t51383H Brassica oleracea HOM05D000561 ORTHO05D008162 3.5e-89 332.4 269 65.4
Lsat_1_v5_gn_4_124200 Lactuca sativa HOM05D000561 ORTHO05D008162 4.6e-89 332.0 270 64.1
Os03g0186100 Oryza sativa ssp. japonica HOM05D000561 ORTHO05D008162 6.0e-89 331.6 261 64.8
Peaxi162Scf00566g00219 Petunia axillaris HOM05D000561 ORTHO05D008162 1.3e-88 330.5 246 68.3
Aqoxy6G01386 Aquilegia oxysepala HOM05D000561 ORTHO05D008162 1.8e-88 330.1 254 67.7
BraA09t40923Z Brassica rapa HOM05D000561 ORTHO05D008162 1.8e-88 330.1 276 63.8
SGA_v2.0_scaffold71G24043 Striga asiatica HOM05D000561 ORTHO05D008162 1.8e-88 330.1 259 65.3
PGR031G3300 Punica granatum HOM05D000561 ORTHO05D008162 6.7e-88 328.2 248 69.4
Zm00001eb006450 Zea mays HOM05D000561 ORTHO05D008162 9.6e-87 324.3 294 60.2
BcaB08g35302 Brassica carinata HOM05D000561 ORTHO05D008162 1.3e-86 323.9 276 62.7
EL10Ac1g01805 Beta vulgaris HOM05D000561 ORTHO05D008162 1.6e-86 323.6 276 63.0
BcaC07g40815 Brassica carinata HOM05D000561 ORTHO05D008162 3.1e-85 319.3 254 65.4
Lsat_1_v5_gn_1_20480 Lactuca sativa HOM05D000561 ORTHO05D008162 9.0e-85 317.8 289 59.2
Thhalv10001252m.g Eutrema salsugineum HOM05D000561 ORTHO05D008162 7.6e-84 314.7 280 63.9
Migut.O00512 Erythranthe guttata HOM05D000561 ORTHO05D008162 1.7e-83 313.5 321 54.5
HPP92_011186 Vanilla planifolia HOM05D000561 ORTHO05D008162 1.4e-82 310.5 274 60.2
ATR0087G004 Amborella trichopoda HOM05D000561 ORTHO05D008162 5.1e-80 302.0 235 65.1
VMungo1309G1588 Vigna mungo HOM05D000561 ORTHO05D008162 6.2e-78 295.0 243 65.0
Hund26617 Selenicereus undatus HOM05D000561 ORTHO05D008162 2.6e-76 289.7 425 44.0
Cpa.g.sc64.2 Carica papaya HOM05D000561 ORTHO05D008162 1.0e-75 287.7 200 73.5
Lj4A51T47 Lonicera japonica HOM05D000561 ORTHO05D008162 1.4e-74 283.9 204 72.1
Glyma.04G037000 Glycine max HOM05D000561 ORTHO05D008162 6.3e-70 268.5 276 58.3
Pp3c9_18350 Physcomitrium patens HOM05D000561 ORTHO05D008162 2.6e-68 263.1 261 51.3
AagrBONN_evm.TU.Sc2ySwM_228.1283 Anthoceros agrestis HOM05D000561 ORTHO05D008162 4.5e-68 262.3 254 54.3
ECA247G1201 Erigeron canadensis HOM05D000561 ORTHO05D000514 7.7e-68 261.5 201 65.2
Ah.06g192790 Amaranthus hybridus HOM05D000561 ORTHO05D008162 5.5e-66 255.4 319 51.4
AUR62022458 Chenopodium quinoa HOM05D000561 ORTHO05D008162 5.5e-66 255.4 227 63.4
SHI08313 Sapria himalayana HOM05D000561 ORTHO05D008162 7.2e-66 255.0 260 55.0
Carub.0004s0671 Capsella rubella HOM05D000561 ORTHO05D008162 1.0e-64 251.1 271 53.1
SEGI_40608 Sequoiadendron giganteum HOM05D000561 ORTHO05D008162 2.3e-64 250.0 224 56.7
Mapoly0101s0072 Marchantia polymorpha HOM05D000561 ORTHO05D008162 4.3e-63 245.7 271 49.8
AUR62040067 Chenopodium quinoa HOM05D000561 ORTHO05D008162 6.1e-57 225.3 298 48.3
SMO367G0032 Selaginella moellendorffii HOM05D000561 ORTHO05D008162 7.9e-57 224.9 255 48.2
Sc26g0003980 Simmondsia chinensis HOM05D000561 ORTHO05D008162 2.0e-55 220.3 205 65.9
CBR_g12178 Chara braunii HOM05D000561 ORTHO05D008162 1.7e-54 217.2 284 43.0
Cre09.g409100 Chlamydomonas reinhardtii HOM05D000561 ORTHO05D008162 7.0e-53 211.8 256 47.3
CDE10G0258 Ceratophyllum demersum HOM05D000561 ORTHO05D008162 4.2e-50 202.6 182 59.9
arahy.Tifrunner.gnm1.ann1.96H4RR Arachis hypogaea HOM05D000561 ORTHO05D008162 5.5e-50 202.2 153 71.2
unitig_32.g11128 Utricularia gibba HOM05D000561 ORTHO05D008162 4.7e-49 199.1 140 67.1
MCO15G161 Micromonas commoda HOM05D000561 ORTHO05D008162 1.3e-46 191.0 282 40.8
Migut.N02692 Erythranthe guttata HOM05D000561 ORTHO05D008162 1.1e-45 188.0 169 59.8
PRCOL_00005348 Prasinoderma coloniale HOM05D000561 ORTHO05D008162 9.4e-42 174.9 259 41.3
Lsat_1_v5_gn_2_45600 Lactuca sativa HOM05D000561 ORTHO05D008162 2.3e-40 170.2 203 47.3
SGA_v2.0_scaffold217G42442 Striga asiatica HOM05D000561 ORTHO05D008162 4.2e-34 149.4 133 60.2
Lsat_1_v5_gn_5_145360 Lactuca sativa HOM05D000561 ORTHO05D008162 4.7e-33 146.0 175 48.6
SGA_v2.0_scaffold217G42441 Striga asiatica HOM05D000561 ORTHO05D008162 1.2e-23 114.8 79 65.8
Lsat_1_v5_gn_5_39421 Lactuca sativa HOM05D000487 ORTHO05D048384 6.6e-19 99.0 79 59.5
PGSC0003DMG400030254 Solanum tuberosum HOM05D000561 ORTHO05D008162 1.7e-06 57.8 52 61.5


User provided reference genes

Program Settings