Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN27G1697 Fragaria x ananassa HOM05D006577 ORTHO05D008428 3.9e-252 874.8 612 100.0
FvH4_2g37380 Fragaria vesca HOM05D006577 ORTHO05D008428 7.5e-211 737.6 546 90.5
FAN21G2299 Fragaria x ananassa HOM05D006577 ORTHO05D008428 1.7e-199 699.9 543 86.2
FAN20G0322 Fragaria x ananassa HOM05D006577 ORTHO05D008428 1.8e-188 663.3 461 80.5
RcHm_v2.0_Chr6g0304321 Rosa chinensis HOM05D006577 ORTHO05D008428 5.8e-187 658.3 612 76.3
Prupe.1G353400 Prunus persica HOM05D006577 ORTHO05D008428 3.7e-149 532.7 435 69.0
MD08G1001400 Malus domestica HOM05D006577 ORTHO05D008428 3.4e-147 526.2 437 69.1
arahy.Tifrunner.gnm1.ann1.0U4NMV Arachis hypogaea HOM05D006577 ORTHO05D008428 5.9e-131 472.2 449 60.6
arahy.Tifrunner.gnm1.ann1.Y0J304 Arachis hypogaea HOM05D006577 ORTHO05D008428 5.9e-131 472.2 449 60.6
CiPaw.11G075200 Carya illinoinensis HOM05D006577 ORTHO05D008428 5.9e-131 472.2 346 73.1
Dinv41806 Davidia involucrata HOM05D006577 ORTHO05D008428 5.9e-131 472.2 348 72.1
GSVIVG01036870001 Vitis vinifera HOM05D006577 ORTHO05D008428 7.7e-131 471.9 346 73.4
Glyma.01G154300 Glycine max HOM05D006577 ORTHO05D008428 8.5e-130 468.4 350 70.0
Haze_08434 Corylus avellana HOM05D006577 ORTHO05D008428 9.4e-129 464.9 441 67.1
Glyma.11G090300 Glycine max HOM05D006577 ORTHO05D008428 3.6e-128 463.0 378 66.4
Cfa012291 Carpinus fangiana HOM05D000435 ORTHO05D000430 6.1e-128 462.2 378 70.6
Ca_13135_v3 Cicer arietinum L. HOM05D006577 ORTHO05D008428 1.0e-127 461.5 351 69.5
Psat1g131640 Pisum sativum HOM05D006577 ORTHO05D008428 2.3e-127 460.3 352 70.2
Cc08_g05650 Coffea canephora HOM05D006577 ORTHO05D008428 3.3e-126 456.4 351 70.4
Peaxi162Scf00193g00730 Petunia axillaris HOM05D006577 ORTHO05D008428 4.4e-126 456.1 343 70.8
TPR.G29075 Trifolium pratense HOM05D006577 ORTHO05D008428 4.4e-126 456.1 440 63.0
Actinidia32789 Actinidia chinensis HOM05D006577 ORTHO05D008428 9.7e-126 454.9 345 69.3
VMungo1215G3406 Vigna mungo HOM05D006577 ORTHO05D008428 9.7e-126 454.9 346 69.9
CSS0014058 Camellia sinensis var. sinensis HOM05D006577 ORTHO05D008428 1.7e-125 454.1 346 70.2
COL.COLO4_11282 Corchorus olitorius HOM05D006577 ORTHO05D008428 2.2e-125 453.8 349 69.6
CAN.G1026.7 Capsicum annuum HOM05D006577 ORTHO05D008428 4.8e-125 452.6 342 71.1
TAR629G1131 Trochodendron aralioides HOM05D006577 ORTHO05D008428 4.8e-125 452.6 345 71.9
Phvul.002G121300 Phaseolus vulgaris HOM05D006577 ORTHO05D008428 6.3e-125 452.2 467 58.2
CsaV3_4G027910 Cucumis sativus L. HOM05D006577 ORTHO05D008428 8.2e-125 451.8 433 59.8
Cpa.g.sc90.36 Carica papaya HOM05D006577 ORTHO05D008428 1.1e-124 451.4 349 67.9
Oeu046783.1 Olea europaea HOM05D006577 ORTHO05D008428 1.1e-124 451.4 380 65.3
Eucgr.D02560 Eucalyptus grandis HOM05D006577 ORTHO05D008428 1.8e-124 450.7 358 67.0
Manes.17G000100 Manihot esculenta HOM05D006577 ORTHO05D008428 3.1e-124 449.9 449 58.4
Sopen08g024050 Solanum pennellii HOM05D006577 ORTHO05D008428 4.1e-124 449.5 341 70.7
MELO3C010522.2 Cucumis melo HOM05D006577 ORTHO05D008428 5.3e-124 449.1 351 68.4
CANSAT35G0698 Cannabis sativa HOM05D006577 ORTHO05D008428 7.0e-124 448.7 344 69.8
Lj2g0006155 Lotus japonicus HOM05D006577 ORTHO05D008428 7.0e-124 448.7 432 62.0
Nitab4.5_0007095g0010 Nicotiana tabacum HOM05D006577 ORTHO05D008428 9.1e-124 448.4 341 70.7
Oeu015543.2 Olea europaea HOM05D006577 ORTHO05D008428 9.1e-124 448.4 440 58.9
Rhsim11G0036700 Rhododendron simsii HOM05D006577 ORTHO05D008428 2.0e-123 447.2 342 69.3
PGR042G0863 Punica granatum HOM05D006577 ORTHO05D008428 2.6e-123 446.8 349 68.5
vmacro00091 Vaccinium macrocarpon HOM05D006577 ORTHO05D008428 4.5e-123 446.0 342 69.6
Medtr2g040410 Medicago truncatula HOM05D006577 ORTHO05D008428 1.0e-122 444.9 450 60.4
Atru.chr8.2629 Acer truncatum HOM05D006577 ORTHO05D008428 1.3e-122 444.5 346 67.9
Solyc08g075420.4 Solanum lycopersicum HOM05D006577 ORTHO05D008428 5.0e-122 442.6 340 70.3
ECA233G0973 Erigeron canadensis HOM05D006577 ORTHO05D008428 6.5e-122 442.2 346 67.3
Thecc.03G318900 Theobroma cacao HOM05D006577 ORTHO05D008428 8.5e-122 441.8 346 68.5
Lsat_1_v5_gn_6_17281 Lactuca sativa HOM05D006577 ORTHO05D008428 2.5e-121 440.3 345 68.1
Lalb_Chr16g0380351 Lupinus albus HOM05D006577 ORTHO05D008428 4.2e-121 439.5 440 61.4
MSTRG.1757 Avicennia marina HOM05D006577 ORTHO05D008428 6.1e-120 435.6 341 68.6
Gohir.A08G149500 Gossypium hirsutum HOM05D006577 ORTHO05D008428 1.4e-119 434.5 353 66.6
Nn7g37388 Nelumbo nucifera HOM05D006577 ORTHO05D008428 1.4e-119 434.5 345 67.2
TWI73G0063 Tripterygium wilfordii HOM05D006577 ORTHO05D008428 1.4e-119 434.5 421 61.3
Aa31LG6G1900 Aethionema arabicum HOM05D006577 ORTHO05D008428 2.0e-118 430.6 348 66.1
EL10Ac8g19602 Beta vulgaris HOM05D006577 ORTHO05D008428 3.3e-118 429.9 375 64.0
CDE01G0285 Ceratophyllum demersum HOM05D006577 ORTHO05D008428 4.4e-118 429.5 385 61.8
Gohir.D08G170500 Gossypium hirsutum HOM05D006577 ORTHO05D008428 7.5e-118 428.7 444 59.2
Gorai.004G178000 Gossypium raimondii HOM05D006577 ORTHO05D008428 1.3e-117 427.9 446 58.7
HanXRQChr07g0198411 Helianthus annuus HOM05D006577 ORTHO05D008428 1.3e-117 427.9 338 68.6
CDE12G0431 Ceratophyllum demersum HOM05D006577 ORTHO05D008428 2.8e-117 426.8 342 67.3
ClCG11G016060 Citrullus lanatus HOM05D006577 ORTHO05D008428 4.8e-117 426.0 362 64.6
Sp7g17900 Schrenkiella parvula HOM05D006577 ORTHO05D008428 4.8e-117 426.0 349 67.9
AT4G19190 Arabidopsis thaliana HOM05D006577 ORTHO05D008428 8.2e-117 425.2 356 65.7
Ciclev10011516m.g Citrus clementina HOM05D006577 ORTHO05D008428 1.1e-116 424.9 342 66.4
Thhalv10024821m.g Eutrema salsugineum HOM05D006577 ORTHO05D008428 4.1e-116 422.9 345 68.1
Migut.E01373 Erythranthe guttata HOM05D006577 ORTHO05D008428 1.6e-115 421.0 344 66.9
ATR0568G043 Amborella trichopoda HOM05D006577 ORTHO05D008428 2.7e-115 420.2 346 66.2
A01p11160 Brassica napus HOM05D006577 ORTHO05D008428 4.5e-115 419.5 353 66.0
CARHR226070 Cardamine hirsuta HOM05D006577 ORTHO05D008428 7.7e-115 418.7 447 62.2
Carub.0007s2195 Capsella rubella HOM05D006577 ORTHO05D008428 1.3e-114 417.9 436 59.6
Aqoxy7G00896 Aquilegia oxysepala HOM05D006577 ORTHO05D008428 2.2e-114 417.2 455 56.3
AL7G34890 Arabidopsis lyrata HOM05D006577 ORTHO05D008428 2.2e-114 417.2 481 57.2
Potri.004G236300 Populus trichocarpa HOM05D006577 ORTHO05D008428 2.9e-114 416.8 412 61.7
AUR62030109 Chenopodium quinoa HOM05D006577 ORTHO05D008428 5.0e-114 416.0 480 55.2
DCAR_030906 Daucus carota HOM05D006577 ORTHO05D008428 1.1e-113 414.8 342 63.7
C01p13200 Brassica napus HOM05D006577 ORTHO05D008428 5.5e-113 412.5 450 60.9
BolC1t01294H Brassica oleracea HOM05D006577 ORTHO05D008428 5.5e-113 412.5 450 60.0
BraA01t01062Z Brassica rapa HOM05D006577 ORTHO05D008428 2.1e-112 410.6 448 60.5
Sabra01G0180600 Salix brachista HOM05D006577 ORTHO05D008428 3.4e-110 403.3 479 56.8
SEGI_36653 Sequoiadendron giganteum HOM05D006577 ORTHO05D008428 2.2e-109 400.6 417 58.8
PSO502G0007 Papaver somniferum HOM05D006577 ORTHO05D008428 3.1e-108 396.7 344 63.4
PSO675G5955 Papaver somniferum HOM05D006577 ORTHO05D008428 1.2e-107 394.8 344 63.1
unitig_37.g12910 Utricularia gibba HOM05D006577 ORTHO05D008428 2.0e-107 394.0 346 61.8
THA.LOC104806196 Tarenaya hassleriana HOM05D006577 ORTHO05D008428 1.3e-106 391.3 353 63.5
HPP92_002488 Vanilla planifolia HOM05D006577 ORTHO05D008428 1.3e-106 391.3 422 54.7
BcaC09g51429 Brassica carinata HOM05D006577 ORTHO05D008428 1.2e-104 384.8 451 58.8
QL12p004173 Quercus lobata HOM05D006577 ORTHO05D008428 1.8e-103 380.9 651 42.9
Mapoly0190s0006 Marchantia polymorpha HOM05D006577 ORTHO05D008428 1.6e-96 357.8 331 57.7
Pp3c3_31660 Physcomitrium patens HOM05D006577 ORTHO05D008428 2.0e-94 350.9 343 56.0
BcaC09g51430 Brassica carinata HOM05D006577 ORTHO05D008428 4.9e-93 346.3 300 64.7
SMO172G0042 Selaginella moellendorffii HOM05D006577 ORTHO05D008428 2.7e-91 340.5 428 49.1
Lj3A8G25 Lonicera japonica HOM05D006577 ORTHO05D008428 1.9e-89 334.3 289 63.3
SGA_v2.0_scaffold144G35886 Striga asiatica HOM05D006577 ORTHO05D008428 9.5e-89 332.0 310 61.3
Sc24g0001520 Simmondsia chinensis HOM05D006577 ORTHO05D008428 3.7e-85 320.1 256 68.0
Zm00001eb227500 Zea mays HOM05D006577 ORTHO05D008428 3.7e-77 293.5 294 58.2
CBR_g50314 Chara braunii HOM05D006577 ORTHO05D008428 1.9e-76 291.2 316 51.6
Sed0006082 Sechium edule HOM05D006577 ORTHO05D008428 5.4e-76 289.7 379 50.7
FAN21G2282 Fragaria x ananassa HOM05D006577 ORTHO05D011051 1.9e-73 281.2 264 95.1
FAN21G2462 Fragaria x ananassa HOM05D006577 ORTHO05D011051 2.6e-70 270.8 187 94.7
FAN21G2626 Fragaria x ananassa HOM05D006577 ORTHO05D011051 4.9e-69 266.5 264 93.2
Lj3A28G25 Lonicera japonica HOM05D006577 ORTHO05D008428 6.4e-61 239.6 212 60.4
Ah.09g232390 Amaranthus hybridus HOM05D006577 ORTHO05D008428 2.7e-59 234.2 341 45.5
Hund17694 Selenicereus undatus HOM05D006577 ORTHO05D008428 1.8e-55 221.5 201 59.2
Hund17692 Selenicereus undatus HOM05D006577 ORTHO05D008428 5.3e-55 219.9 161 70.2
HanXRQChr07g0198421 Helianthus annuus HOM05D006577 ORTHO05D008428 2.0e-46 191.4 208 54.3
Lj9P453T24 Lonicera japonica HOM05D006577 ORTHO05D008428 2.2e-45 188.0 184 53.8
MCO15G109 Micromonas commoda HOM05D006577 ORTHO05D008428 4.2e-36 157.1 294 34.4
TPR.G30154 Trifolium pratense HOM05D006577 ORTHO05D008428 1.7e-29 135.2 203 45.8
CARHR123800 Cardamine hirsuta HOM05D006577 ORTHO05D008428 9.4e-28 129.4 70 87.1
Zm00001eb395460 Zea mays HOM05D006577 ORTHO05D008428 2.0e-25 121.7 113 62.8
Zm00001eb339160 Zea mays HOM05D006577 ORTHO05D008428 2.8e-24 117.9 89 71.9
Os06g0708900 Oryza sativa ssp. japonica HOM05D006577 ORTHO05D008428 1.4e-23 115.5 92 68.5
MD15G1000700 Malus domestica HOM05D006577 ORTHO05D008428 4.1e-23 114.0 131 55.7
VMungo0251G3731 Vigna mungo HOM05D006577 ORTHO05D008428 5.9e-22 110.2 88 67.0
Nitab4.5_0000030g0480 Nicotiana tabacum HOM05D006577 ORTHO05D008428 1.6e-19 102.1 60 80.0
AUR62042461 Chenopodium quinoa HOM05D006577 ORTHO05D008428 5.7e-17 93.6 53 79.2
FvH4_3g03932 Fragaria vesca HOM05D006577 ORTHO05D008428 1.4e-15 89.0 46 89.1
Cre06.g280700 Chlamydomonas reinhardtii HOM05D006577 ORTHO05D008428 5.9e-14 83.6 136 36.0
Lj3C28T3 Lonicera japonica HOM05D006577 ORTHO05D008428 1.3e-13 82.4 49 83.7
Lj3A8T28 Lonicera japonica HOM05D006577 ORTHO05D008428 1.1e-12 79.3 49 81.6
BcaB08g35318 Brassica carinata HOM05D006577 ORTHO05D008428 3.6e-11 74.3 58 65.5
TPR.G13376 Trifolium pratense HOM05D006577 ORTHO05D008428 5.2e-10 70.5 67 59.7


User provided reference genes

Program Settings