Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN27G1680 Fragaria x ananassa HOM05D007231 ORTHO05D009024 1.1e-142 510.0 259 100.0
FvH4_2g23810 Fragaria vesca HOM05D007231 ORTHO05D009024 7.5e-136 487.3 259 96.9
FAN20G2044 Fragaria x ananassa HOM05D007231 ORTHO05D009024 3.1e-134 481.9 301 85.4
RcHm_v2.0_Chr6g0291381 Rosa chinensis HOM05D007231 ORTHO05D009024 9.8e-128 460.3 260 91.5
Prupe.8G243400 Prunus persica HOM05D007231 ORTHO05D009024 4.4e-104 381.7 260 78.1
MD11G1288600 Malus domestica HOM05D007231 ORTHO05D009024 1.5e-99 366.7 260 73.5
CiPaw.08G104200 Carya illinoinensis HOM05D007231 ORTHO05D009024 1.2e-93 347.1 260 68.8
Atru.chr5.1389 Acer truncatum HOM05D007231 ORTHO05D009024 4.6e-93 345.1 260 68.5
Cfa006118 Carpinus fangiana HOM05D007231 ORTHO05D009024 1.9e-91 339.7 264 65.9
QL12p022281 Quercus lobata HOM05D007231 ORTHO05D009024 5.6e-91 338.2 260 68.8
GSVIVG01011110001 Vitis vinifera HOM05D007231 ORTHO05D009024 6.2e-90 334.7 258 67.1
Actinidia00741 Actinidia chinensis HOM05D007231 ORTHO05D009024 2.4e-89 332.8 260 67.7
TAR365G1202 Trochodendron aralioides HOM05D007231 ORTHO05D009024 2.4e-89 332.8 260 66.2
TAR636G3122 Trochodendron aralioides HOM05D007231 ORTHO05D009024 6.9e-89 331.3 260 66.5
Dinv11248 Davidia involucrata HOM05D007231 ORTHO05D009024 2.0e-88 329.7 260 67.3
Duzib211G0396 Durio zibethinus HOM05D007231 ORTHO05D009024 2.0e-88 329.7 260 65.8
Nn1g02166 Nelumbo nucifera HOM05D007231 ORTHO05D009024 5.8e-88 328.2 260 68.1
CANSAT25G1925 Cannabis sativa HOM05D007231 ORTHO05D009024 9.9e-88 327.4 260 66.2
COL.COLO4_09128 Corchorus olitorius HOM05D007231 ORTHO05D009024 9.9e-88 327.4 260 66.5
Ciclev10021857m.g Citrus clementina HOM05D007231 ORTHO05D009024 8.4e-87 324.3 260 63.8
Actinidia09146 Actinidia chinensis HOM05D007231 ORTHO05D009024 1.4e-86 323.6 260 66.2
Thecc.01G282400 Theobroma cacao HOM05D007231 ORTHO05D009024 2.4e-86 322.8 260 65.0
Manes.05G074400 Manihot esculenta HOM05D007231 ORTHO05D009024 7.1e-86 321.2 260 66.2
CAN.G609.11 Capsicum annuum HOM05D007231 ORTHO05D009024 1.2e-85 320.5 260 64.2
THA.LOC104801225 Tarenaya hassleriana HOM05D007231 ORTHO05D009024 2.1e-85 319.7 261 67.0
Sopen09g026640 Solanum pennellii HOM05D007231 ORTHO05D009024 3.5e-85 318.9 260 63.8
Lj5g0005680 Lotus japonicus HOM05D007231 ORTHO05D009024 4.6e-85 318.5 255 65.9
Solyc09g064930.3 Solanum lycopersicum HOM05D007231 ORTHO05D009024 6.0e-85 318.2 260 63.5
CsaV3_7G028660 Cucumis sativus L. HOM05D007231 ORTHO05D009024 1.0e-84 317.4 260 64.6
Rhsim13G0023500 Rhododendron simsii HOM05D007231 ORTHO05D009024 1.0e-84 317.4 260 64.6
Peaxi162Scf00570g00058 Petunia axillaris HOM05D007231 ORTHO05D009024 1.3e-84 317.0 260 63.8
Gohir.D08G077400 Gossypium hirsutum HOM05D007231 ORTHO05D009024 1.7e-84 316.6 260 65.0
Dinv32951 Davidia involucrata HOM05D007231 ORTHO05D009024 2.3e-84 316.2 263 64.6
Nitab4.5_0001028g0140 Nicotiana tabacum HOM05D007231 ORTHO05D009024 2.3e-84 316.2 261 64.4
MELO3C015851.2 Cucumis melo HOM05D007231 ORTHO05D009024 1.1e-83 313.9 260 64.2
Gorai.004G082300 Gossypium raimondii HOM05D007231 ORTHO05D009024 1.1e-83 313.9 260 64.6
arahy.Tifrunner.gnm1.ann1.9UA39Y Arachis hypogaea HOM05D007231 ORTHO05D009024 1.9e-83 313.2 261 65.1
arahy.Tifrunner.gnm1.ann1.LJDI86 Arachis hypogaea HOM05D007231 ORTHO05D009024 1.9e-83 313.2 261 65.1
Gohir.A08G069100 Gossypium hirsutum HOM05D007231 ORTHO05D009024 5.6e-83 311.6 260 64.2
Sabra19G0055900 Salix brachista HOM05D007231 ORTHO05D009024 9.6e-83 310.8 260 65.0
Glyma.10G025400 Glycine max HOM05D007231 ORTHO05D009024 8.1e-82 307.8 255 63.9
Cpa.g.sc64.168 Carica papaya HOM05D007231 ORTHO05D009024 1.4e-81 307.0 260 62.3
Phvul.007G170300 Phaseolus vulgaris HOM05D007231 ORTHO05D009024 1.4e-81 307.0 255 63.9
Potri.019G046400 Populus trichocarpa HOM05D007231 ORTHO05D009024 5.3e-81 305.1 260 64.2
Eucgr.K03384 Eucalyptus grandis HOM05D007231 ORTHO05D009024 1.2e-80 303.9 251 62.5
MBI19_g24716_MAGBIO Magnolia biondii HOM05D007231 ORTHO05D009024 1.2e-80 303.9 257 62.3
Nitab4.5_0002386g0100 Nicotiana tabacum HOM05D002055 ORTHO05D009024 2.0e-80 303.1 258 62.8
vmacro02556 Vaccinium macrocarpon HOM05D007231 ORTHO05D009024 2.6e-80 302.8 260 63.1
Lalb_Chr06g0163091 Lupinus albus HOM05D007231 ORTHO05D009024 5.8e-80 301.6 255 63.9
Aa31LG1G9290 Aethionema arabicum HOM05D007231 ORTHO05D009024 7.6e-80 301.2 261 62.8
Cc01_g19680 Coffea canephora HOM05D007231 ORTHO05D009024 9.9e-80 300.8 260 61.9
SalBow4G2275 Salvia bowleyana HOM05D007231 ORTHO05D009024 1.1e-78 297.4 261 60.5
BcaC05g24551 Brassica carinata HOM05D007231 ORTHO05D009024 1.4e-78 297.0 261 61.7
Migut.D00275 Erythranthe guttata HOM05D007231 ORTHO05D009024 1.4e-78 297.0 261 60.2
Ca_09766_v3 Cicer arietinum L. HOM05D002055 ORTHO05D002120 2.4e-78 296.2 253 62.1
Lalb_Chr02g0142831 Lupinus albus HOM05D007231 ORTHO05D009024 2.4e-78 296.2 255 62.7
PSO210G0158 Papaver somniferum HOM05D007231 ORTHO05D009024 5.4e-78 295.0 262 61.1
BcaC05g24637 Brassica carinata HOM05D007231 ORTHO05D009024 7.1e-78 294.7 260 61.9
Psat6g125920 Pisum sativum HOM05D007231 ORTHO05D009024 9.3e-78 294.3 256 62.9
AL1G12740 Arabidopsis lyrata HOM05D007231 ORTHO05D009024 1.6e-77 293.5 261 62.1
AT1G03250 Arabidopsis thaliana HOM05D007231 ORTHO05D009024 1.6e-77 293.5 261 61.3
Oeu015959.1 Olea europaea HOM05D007231 ORTHO05D009024 1.6e-77 293.5 233 64.4
A10p01800 Brassica napus HOM05D007231 ORTHO05D009024 2.7e-77 292.7 260 61.5
Medtr1g072510 Medicago truncatula HOM05D007231 ORTHO05D009024 2.7e-77 292.7 236 65.3
Sp1g02240 Schrenkiella parvula HOM05D007231 ORTHO05D009024 1.8e-76 290.0 261 60.5
BraA10t42455Z Brassica rapa HOM05D007231 ORTHO05D009024 2.3e-76 289.7 260 60.8
Oeu022878.1 Olea europaea HOM05D007231 ORTHO05D009024 3.9e-76 288.9 233 63.5
CARHR002550 Cardamine hirsuta HOM05D007231 ORTHO05D009024 6.7e-76 288.1 261 60.5
Thhalv10008549m.g Eutrema salsugineum HOM05D007231 ORTHO05D009024 6.7e-76 288.1 264 59.5
Lj2C1175G18 Lonicera japonica HOM05D007231 ORTHO05D009024 1.1e-75 287.3 325 52.9
MSTRG.18222 Avicennia marina HOM05D007231 ORTHO05D009024 1.9e-75 286.6 260 58.5
Aqoxy2G03271 Aquilegia oxysepala HOM05D007231 ORTHO05D009024 2.5e-75 286.2 257 60.7
BolC5t28956H Brassica oleracea HOM05D007231 ORTHO05D009024 4.3e-75 285.4 267 59.9
C05p01780 Brassica napus HOM05D007231 ORTHO05D009024 5.6e-75 285.0 271 59.0
Hund05352 Selenicereus undatus HOM05D007231 ORTHO05D009024 1.3e-74 283.9 261 58.6
VMungo0720G1677 Vigna mungo HOM05D002055 ORTHO05D002120 1.6e-74 283.5 261 59.0
Carub.0001s0236 Capsella rubella HOM05D007231 ORTHO05D009024 4.8e-74 282.0 261 59.0
HanXRQChr01g0002311 Helianthus annuus HOM05D007231 ORTHO05D009024 1.8e-73 280.0 260 58.5
EL10Ac7g17220 Beta vulgaris HOM05D007231 ORTHO05D009024 1.2e-72 277.3 304 52.0
AUR62036799 Chenopodium quinoa HOM05D007231 ORTHO05D009024 1.2e-72 277.3 287 52.3
HanXRQChr11g0327631 Helianthus annuus HOM05D007231 ORTHO05D009024 2.0e-72 276.6 260 57.7
Sed0024964 Sechium edule HOM05D002055 ORTHO05D002120 2.6e-72 276.2 243 60.9
Lsat_1_v5_gn_5_190100 Lactuca sativa HOM05D007231 ORTHO05D009024 3.8e-71 272.3 260 56.5
SGA_v2.0_scaffold11G05804 Striga asiatica HOM05D002055 ORTHO05D002120 5.5e-70 268.5 268 54.9
TWI14G0923 Tripterygium wilfordii HOM05D002055 ORTHO05D002120 5.5e-70 268.5 210 68.1
Duzib138G1636 Durio zibethinus HOM05D007231 ORTHO05D009024 9.3e-70 267.7 260 58.1
SGA_v2.0_scaffold1G00456 Striga asiatica HOM05D007231 ORTHO05D009024 1.0e-68 264.2 260 54.6
CDE04G0796 Ceratophyllum demersum HOM05D007231 ORTHO05D009024 1.1e-67 260.8 249 57.0
ECA248G0248 Erigeron canadensis HOM05D002055 ORTHO05D002120 1.5e-67 260.4 257 56.8
Os11g0147100 Oryza sativa ssp. japonica HOM05D007231 ORTHO05D009024 6.2e-66 255.0 257 51.8
ClCG09G006940 Citrullus lanatus HOM05D002055 ORTHO05D002120 1.4e-65 253.8 209 64.6
PGR044G2216 Punica granatum HOM05D007231 ORTHO05D009024 9.0e-65 251.1 196 65.8
CSS0040014 Camellia sinensis var. sinensis HOM05D007231 ORTHO05D009024 2.2e-63 246.5 198 66.2
Os12g0144000 Oryza sativa ssp. japonica HOM05D007231 ORTHO05D009024 2.9e-63 246.1 255 51.0
Zm00001eb342980 Zea mays HOM05D007231 ORTHO05D009024 6.5e-63 245.0 255 51.0
Ciclev10022442m.g Citrus clementina HOM05D007231 ORTHO05D009024 7.1e-62 241.5 196 63.3
unitig_0.g109 Utricularia gibba HOM05D007231 ORTHO05D009024 7.9e-61 238.0 221 56.6
ATR0626G005 Amborella trichopoda HOM05D007231 ORTHO05D009024 8.7e-60 234.6 234 55.1
Zm00001eb196600 Zea mays HOM05D007231 ORTHO05D009024 9.7e-59 231.1 259 50.2
HPP92_016066 Vanilla planifolia HOM05D006695 ORTHO05D008239 1.2e-53 214.2 217 53.9
AUR62039907 Chenopodium quinoa HOM05D007231 ORTHO05D009024 5.0e-47 192.2 160 61.2
Sc05g0004910 Simmondsia chinensis HOM05D007231 ORTHO05D009024 1.1e-46 191.0 173 59.0
TPR.G19967 Trifolium pratense HOM05D007231 ORTHO05D009024 3.3e-35 152.9 122 63.9
Mapoly0057s0044 Marchantia polymorpha HOM05D007231 ORTHO05D009024 1.7e-34 150.6 227 41.4
SEGI_15193 Sequoiadendron giganteum HOM05D007231 ORTHO05D009024 6.3e-34 148.7 225 40.0
SMO170G0043 Selaginella moellendorffii HOM05D007231 ORTHO05D009024 2.0e-24 117.1 233 35.6
SMO137G0298 Selaginella moellendorffii HOM05D007231 ORTHO05D009024 3.5e-24 116.3 215 37.2
AagrBONN_evm.TU.Sc2ySwM_117.667 Anthoceros agrestis HOM05D007231 ORTHO05D009024 1.5e-22 110.9 166 38.0
Pp3c4_28170 Physcomitrium patens HOM05D007231 ORTHO05D009024 5.2e-20 102.4 220 30.9
MCO13G326 Micromonas commoda HOM05D007231 ORTHO05D009024 4.1e-17 92.8 197 32.0
Cre01.g040100 Chlamydomonas reinhardtii HOM05D007231 ORTHO05D009024 2.7e-16 90.1 193 30.1
Cc01_g19320 Coffea canephora HOM05D007231 ORTHO05D009024 1.7e-15 87.4 127 43.3
TPR.G24733 Trifolium pratense HOM05D007231 ORTHO05D009024 4.7e-13 79.3 66 63.6
CDE02G1070 Ceratophyllum demersum HOM05D007231 ORTHO05D009024 1.0e-12 78.2 135 39.3
BcaC05g24635 Brassica carinata HOM05D007231 ORTHO05D009024 5.2e-12 75.9 86 50.0
CDE02G2493 Ceratophyllum demersum HOM05D007231 ORTHO05D009024 1.7e-10 70.9 67 53.7
TPR.G17639 Trifolium pratense HOM05D007231 ORTHO05D009024 7.3e-06 55.5 48 56.2
TPR.G23952 Trifolium pratense HOM05D007231 ORTHO05D009024 7.3e-06 55.5 48 56.2


User provided reference genes

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