Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN27G1677 Fragaria x ananassa HOM05D003718 ORTHO05D004402 1.8e-92 342.8 206 100.0
FvH4_2g21250 Fragaria vesca HOM05D003718 ORTHO05D004402 6.9e-68 261.2 187 74.3
FAN24G2691 Fragaria x ananassa HOM05D003718 ORTHO05D004402 6.9e-68 261.2 187 74.3
FAN15G3248 Fragaria x ananassa HOM05D003718 ORTHO05D004402 1.2e-67 260.4 187 73.3
FAN27G0576 Fragaria x ananassa HOM05D003718 ORTHO05D004402 1.5e-67 260.0 187 74.3
RcHm_v2.0_Chr6g0287811 Rosa chinensis HOM05D003718 ORTHO05D004402 2.1e-64 249.6 187 71.1
MD05G1194900 Malus domestica HOM05D003718 ORTHO05D004402 1.1e-57 227.3 187 64.7
Prupe.8G221600 Prunus persica HOM05D003718 ORTHO05D004402 1.6e-56 223.4 187 63.6
CANSAT01G0671 Cannabis sativa HOM05D003718 ORTHO05D004402 6.7e-55 218.0 178 64.0
MD10G1181500 Malus domestica HOM05D003718 ORTHO05D004402 1.1e-54 217.2 193 61.7
Dinv34637 Davidia involucrata HOM05D003718 ORTHO05D004402 4.4e-54 215.3 183 60.1
CSS0040480 Camellia sinensis var. sinensis HOM05D003718 ORTHO05D004402 8.2e-53 211.1 178 60.7
Phvul.007G191800 Phaseolus vulgaris HOM05D003718 ORTHO05D004402 4.1e-52 208.8 187 58.3
Hma1.2p1_0273F.1_g109540 Hydrangea macrophylla HOM05D003718 ORTHO05D004402 1.2e-51 207.2 187 58.3
vmacro14814 Vaccinium macrocarpon HOM05D003718 ORTHO05D004402 3.5e-51 205.7 178 59.6
CSS0049010 Camellia sinensis var. sinensis HOM05D003718 ORTHO05D004402 4.5e-51 205.3 187 57.8
Nn1g02814 Nelumbo nucifera HOM05D003718 ORTHO05D004402 5.9e-51 204.9 187 58.8
Potri.005G226100 Populus trichocarpa HOM05D003718 ORTHO05D004402 1.0e-50 204.1 187 57.2
GSVIVG01028357001 Vitis vinifera HOM05D003718 ORTHO05D004402 1.0e-50 204.1 187 58.3
CsaV3_1G015830 Cucumis sativus L. HOM05D003718 ORTHO05D004402 1.3e-50 203.8 187 58.8
Cpa.g.sc20.44 Carica papaya HOM05D003718 ORTHO05D004402 1.7e-50 203.4 191 57.6
Gohir.D11G137575 Gossypium hirsutum HOM05D003718 ORTHO05D004402 2.9e-50 202.6 187 57.8
Lj5g0026512 Lotus japonicus HOM05D003718 ORTHO05D004402 2.9e-50 202.6 187 56.7
QL09p039591 Quercus lobata HOM05D003718 ORTHO05D004402 3.8e-50 202.2 183 57.4
Gorai.007G147600 Gossypium raimondii HOM05D003718 ORTHO05D004402 5.0e-50 201.8 187 57.8
Zm00001eb143710 Zea mays HOM05D003718 ORTHO05D004402 6.5e-50 201.4 191 56.5
Cfa013046 Carpinus fangiana HOM05D003718 ORTHO05D004402 8.5e-50 201.1 187 57.8
Lalb_Chr02g0152551 Lupinus albus HOM05D003718 ORTHO05D004402 8.5e-50 201.1 187 55.6
Rhsim01G0262400 Rhododendron simsii HOM05D003718 ORTHO05D004402 8.5e-50 201.1 178 58.4
CiPaw.03G266000 Carya illinoinensis HOM05D003718 ORTHO05D004402 1.1e-49 200.7 191 56.5
MELO3C025537.2 Cucumis melo HOM05D003718 ORTHO05D004402 1.1e-49 200.7 187 57.8
DCAR_000921 Daucus carota HOM05D003718 ORTHO05D004402 1.1e-49 200.7 187 57.2
Lj1C68G8 Lonicera japonica HOM05D003718 ORTHO05D004402 1.1e-49 200.7 187 56.7
Hund17111 Selenicereus undatus HOM05D003718 ORTHO05D004402 1.1e-49 200.7 178 58.4
Ciclev10019124m.g Citrus clementina HOM05D003718 ORTHO05D004402 1.5e-49 200.3 187 57.2
Gohir.A07G149800 Gossypium hirsutum HOM05D003718 ORTHO05D004402 1.9e-49 199.9 187 56.7
Duzib133G1085 Durio zibethinus HOM05D003718 ORTHO05D004402 2.5e-49 199.5 187 56.1
Phvul.001G162000 Phaseolus vulgaris HOM05D003718 ORTHO05D004402 2.5e-49 199.5 187 57.2
Sabra02G0029600 Salix brachista HOM05D003718 ORTHO05D004402 2.5e-49 199.5 177 59.9
Gorai.001G179000 Gossypium raimondii HOM05D003718 ORTHO05D004402 3.2e-49 199.1 187 56.1
Thecc.01G255900 Theobroma cacao HOM05D003718 ORTHO05D004402 3.2e-49 199.1 187 57.2
Actinidia07305 Actinidia chinensis HOM05D003718 ORTHO05D004402 4.2e-49 198.7 187 55.1
Gohir.D07G156100 Gossypium hirsutum HOM05D003718 ORTHO05D004402 5.5e-49 198.4 187 56.1
Gohir.A11G131600 Gossypium hirsutum HOM05D003718 ORTHO05D004402 7.2e-49 198.0 178 58.4
TWI75G1389 Tripterygium wilfordii HOM05D003718 ORTHO05D004402 9.4e-49 197.6 187 56.7
Ca_09672_v3 Cicer arietinum L. HOM05D003718 ORTHO05D004402 1.2e-48 197.2 187 55.1
arahy.Tifrunner.gnm1.ann1.FU7SP6 Arachis hypogaea HOM05D003718 ORTHO05D004402 2.7e-48 196.1 188 57.4
Glyma.03G164400 Glycine max HOM05D003718 ORTHO05D004402 2.7e-48 196.1 187 56.1
Nn3g19693 Nelumbo nucifera HOM05D003718 ORTHO05D004402 2.7e-48 196.1 178 56.2
Potri.002G036600 Populus trichocarpa HOM05D003718 ORTHO05D004402 2.7e-48 196.1 187 56.7
Solyc05g046330.4 Solanum lycopersicum HOM05D003718 ORTHO05D004402 2.7e-48 196.1 187 56.1
MSTRG.21485 Avicennia marina HOM05D003718 ORTHO05D004402 3.6e-48 195.7 185 55.1
Sabra05G0174600 Salix brachista HOM05D003718 ORTHO05D004402 3.6e-48 195.7 187 56.1
TAR633G0796 Trochodendron aralioides HOM05D003718 ORTHO05D004402 3.6e-48 195.7 179 58.7
Migut.D00439 Erythranthe guttata HOM05D003718 ORTHO05D004402 4.7e-48 195.3 178 57.9
Psat6g054080 Pisum sativum HOM05D003718 ORTHO05D004402 4.7e-48 195.3 187 54.5
Sopen05g027610 Solanum pennellii HOM05D003718 ORTHO05D004402 4.7e-48 195.3 187 56.1
TAR362G0778 Trochodendron aralioides HOM05D003718 ORTHO05D004402 4.7e-48 195.3 178 59.0
arahy.Tifrunner.gnm1.ann1.B1YDGW Arachis hypogaea HOM05D003718 ORTHO05D004402 6.1e-48 194.9 187 52.4
arahy.Tifrunner.gnm1.ann1.EWE7BX Arachis hypogaea HOM05D003718 ORTHO05D004402 6.1e-48 194.9 187 52.4
Duzib211G0290 Durio zibethinus HOM05D003718 ORTHO05D004402 6.1e-48 194.9 186 55.4
Medtr1g069780 Medicago truncatula HOM05D003718 ORTHO05D004402 6.1e-48 194.9 187 54.0
Oeu052043.2 Olea europaea HOM05D003718 ORTHO05D004402 8.0e-48 194.5 188 55.9
VMungo1383G2169 Vigna mungo HOM05D003718 ORTHO05D004402 8.0e-48 194.5 178 57.3
Atru.chr5.1725 Acer truncatum HOM05D003718 ORTHO05D004402 1.0e-47 194.1 187 55.6
TPR.G5874 Trifolium pratense HOM05D003718 ORTHO05D004402 1.0e-47 194.1 187 54.5
arahy.Tifrunner.gnm1.ann1.QXN52H Arachis hypogaea HOM05D003718 ORTHO05D004402 1.4e-47 193.7 188 56.9
VMungo0720G0687 Vigna mungo HOM05D003718 ORTHO05D004402 1.4e-47 193.7 178 55.6
Manes.13G035300 Manihot esculenta HOM05D003718 ORTHO05D004402 1.8e-47 193.4 187 56.1
BcaNung03839 Brassica carinata HOM05D003718 ORTHO05D004402 2.3e-47 193.0 187 54.5
CiPaw.04G187700 Carya illinoinensis HOM05D003718 ORTHO05D004402 2.3e-47 193.0 187 53.5
Aqoxy1G01842 Aquilegia oxysepala HOM05D003718 ORTHO05D004402 3.0e-47 192.6 187 54.5
AUR62013766 Chenopodium quinoa HOM05D003718 ORTHO05D004402 3.0e-47 192.6 178 55.6
AUR62043414 Chenopodium quinoa HOM05D003718 ORTHO05D004402 3.0e-47 192.6 178 55.6
TWI12G1081 Tripterygium wilfordii HOM05D003718 ORTHO05D004402 3.0e-47 192.6 187 55.1
CAN.G54.7 Capsicum annuum HOM05D003718 ORTHO05D004402 5.2e-47 191.8 187 55.1
Glyma.10G038000 Glycine max HOM05D003718 ORTHO05D004402 5.2e-47 191.8 187 55.1
Lalb_Chr21g0313961 Lupinus albus HOM05D003718 ORTHO05D004402 5.2e-47 191.8 187 54.0
Sed0001928 Sechium edule HOM05D003718 ORTHO05D004402 6.7e-47 191.4 187 55.6
AT4G21150 Arabidopsis thaliana HOM05D003718 ORTHO05D004402 8.8e-47 191.0 187 53.5
BcaC09g51252 Brassica carinata HOM05D003718 ORTHO05D004402 1.2e-46 190.7 187 54.0
BolC1t01458H Brassica oleracea HOM05D003718 ORTHO05D004402 1.2e-46 190.7 187 54.0
BraA01t01195Z Brassica rapa HOM05D003718 ORTHO05D004402 1.2e-46 190.7 187 54.5
HanXRQChr04g0110491 Helianthus annuus HOM05D003718 ORTHO05D004402 1.2e-46 190.7 187 54.0
Manes.12G033700 Manihot esculenta HOM05D003718 ORTHO05D004402 2.0e-46 189.9 187 54.5
A01p12510 Brassica napus HOM05D003718 ORTHO05D004402 2.6e-46 189.5 187 54.0
C01p15100 Brassica napus HOM05D003718 ORTHO05D004402 3.3e-46 189.1 187 53.5
Os01g0911200 Oryza sativa ssp. japonica HOM05D003718 ORTHO05D004402 3.3e-46 189.1 192 53.6
Duzib138G1036 Durio zibethinus HOM05D003718 ORTHO05D004402 4.4e-46 188.7 187 53.5
Sp7g19230 Schrenkiella parvula HOM05D003718 ORTHO05D004402 4.4e-46 188.7 187 53.5
A08p15230 Brassica napus HOM05D003718 ORTHO05D001664 5.7e-46 188.3 187 53.5
Peaxi162Scf00320g00717 Petunia axillaris HOM05D003718 ORTHO05D004402 7.5e-46 188.0 187 55.6
AL7G32970 Arabidopsis lyrata HOM05D003718 ORTHO05D004402 9.7e-46 187.6 187 51.9
Thhalv10024580m.g Eutrema salsugineum HOM05D003718 ORTHO05D004402 9.7e-46 187.6 187 52.9
Glyma.19G165800 Glycine max HOM05D003718 ORTHO05D004402 9.7e-46 187.6 187 55.6
Lsat_1_v5_gn_8_92540 Lactuca sativa HOM05D003718 ORTHO05D004402 9.7e-46 187.6 187 51.3
Eucgr.K03255 Eucalyptus grandis HOM05D003718 ORTHO05D004402 1.3e-45 187.2 187 54.0
Carub.0007s2028 Capsella rubella HOM05D003718 ORTHO05D004402 1.7e-45 186.8 187 52.4
COL.COLO4_04023 Corchorus olitorius HOM05D003718 ORTHO05D004402 1.7e-45 186.8 190 54.2
CAN.G106.18 Capsicum annuum HOM05D003718 ORTHO05D004402 2.2e-45 186.4 187 54.0
Psat3g056400 Pisum sativum HOM05D003718 ORTHO05D004402 2.2e-45 186.4 178 55.6
TPR.G9204 Trifolium pratense HOM05D003718 ORTHO05D004402 2.2e-45 186.4 178 56.7
SalBow4G0483 Salvia bowleyana HOM05D003718 ORTHO05D004402 2.8e-45 186.0 181 53.0
Cc01_g18200 Coffea canephora HOM05D003718 ORTHO05D004402 3.7e-45 185.7 187 54.0
Solyc07g014700.4 Solanum lycopersicum HOM05D003718 ORTHO05D004402 6.3e-45 184.9 187 54.0
ECA236G3831 Erigeron canadensis HOM05D003718 ORTHO05D004402 8.2e-45 184.5 187 51.9
Sopen07g005600 Solanum pennellii HOM05D003718 ORTHO05D004402 8.2e-45 184.5 187 54.0
SGA_v2.0_scaffold138G35211 Striga asiatica HOM05D003718 ORTHO05D004402 8.2e-45 184.5 178 53.9
Rhsim13G0036100 Rhododendron simsii HOM05D003718 ORTHO05D004402 1.4e-44 183.7 216 49.1
PSO210G5136 Papaver somniferum HOM05D003718 ORTHO05D004402 1.8e-44 183.3 186 54.8
PSO832G2930 Papaver somniferum HOM05D003718 ORTHO05D004402 1.8e-44 183.3 186 54.8
C03p83480 Brassica napus HOM05D003718 ORTHO05D004402 2.4e-44 183.0 183 53.6
BolC3t20629H Brassica oleracea HOM05D003718 ORTHO05D004402 2.4e-44 183.0 183 53.6
PGR031G0689 Punica granatum HOM05D003718 ORTHO05D004402 2.4e-44 183.0 210 50.0
CARHR227730 Cardamine hirsuta HOM05D003718 ORTHO05D004402 3.1e-44 182.6 187 52.4
Lsat_1_v5_gn_5_182920 Lactuca sativa HOM05D003718 ORTHO05D004402 4.1e-44 182.2 181 52.5
A03p52670 Brassica napus HOM05D003718 ORTHO05D004402 7.0e-44 181.4 187 52.4
BraA03t14340Z Brassica rapa HOM05D003718 ORTHO05D004402 7.0e-44 181.4 187 52.4
THA.LOC104806254 Tarenaya hassleriana HOM05D003718 ORTHO05D004402 1.2e-43 180.6 187 51.9
HPP92_000351 Vanilla planifolia HOM05D003718 ORTHO05D004402 1.2e-43 180.6 186 52.7
Zm00001eb365020 Zea mays HOM05D003718 ORTHO05D004402 3.5e-43 179.1 178 54.5
C07p51100 Brassica napus HOM05D003718 ORTHO05D004402 4.5e-43 178.7 187 52.4
BolC7t45610H Brassica oleracea HOM05D003718 ORTHO05D004402 4.5e-43 178.7 187 52.4
CDE07G1087 Ceratophyllum demersum HOM05D003718 ORTHO05D004402 7.7e-43 177.9 187 51.3
Sc02g0003190 Simmondsia chinensis HOM05D003718 ORTHO05D004402 1.0e-42 177.6 179 52.5
THA.LOC104812416 Tarenaya hassleriana HOM05D003718 ORTHO05D004402 5.0e-42 175.3 187 50.3
vmacro02673 Vaccinium macrocarpon HOM05D003718 ORTHO05D004402 5.0e-42 175.3 186 52.2
ATR0736G006 Amborella trichopoda HOM05D003718 ORTHO05D004402 8.5e-42 174.5 187 50.8
CDE04G2599 Ceratophyllum demersum HOM05D003718 ORTHO05D004402 1.5e-41 173.7 187 50.3
BcaC01g00710 Brassica carinata HOM05D003718 ORTHO05D004402 7.2e-41 171.4 195 49.7
Peaxi162Scf00906g00225 Petunia axillaris HOM05D003718 ORTHO05D004402 2.1e-40 169.9 211 47.4
Actinidia37517 Actinidia chinensis HOM05D003718 ORTHO05D004402 4.7e-40 168.7 164 53.7
EL10Ac1g02094 Beta vulgaris HOM05D003718 ORTHO05D004402 1.0e-39 167.5 200 45.5
CsaV3_UNG055470 Cucumis sativus L. HOM05D003718 ORTHO05D004402 8.8e-39 164.5 187 50.8
EL10Ac1g00739 Beta vulgaris HOM05D003718 ORTHO05D004402 1.2e-38 164.1 198 49.0
SEGI_27157 Sequoiadendron giganteum HOM05D003718 ORTHO05D004402 3.4e-38 162.5 178 49.4
HanXRQChr11g0336771 Helianthus annuus HOM05D003718 ORTHO05D004402 5.7e-38 161.8 167 50.9
Aa31LG6G3160 Aethionema arabicum HOM05D003718 ORTHO05D004402 1.7e-37 160.2 187 48.1
Ca_08683_v3 Cicer arietinum L. HOM05D003718 ORTHO05D004402 1.1e-36 157.5 179 52.0
SGA_v2.0_scaffold1G00624 Striga asiatica HOM05D003718 ORTHO05D004402 9.1e-36 154.5 178 47.8
ClCG03G002590 Citrullus lanatus HOM05D003718 ORTHO05D004402 2.0e-35 153.3 187 47.6
Mapoly0028s0115 Marchantia polymorpha HOM05D003718 ORTHO05D004402 2.0e-35 153.3 203 47.3
Hma1.2p1_0576F.1_g181950 Hydrangea macrophylla HOM05D003718 ORTHO05D004402 2.9e-34 149.4 187 47.6
unitig_22.g5287 Utricularia gibba HOM05D003718 ORTHO05D004402 6.5e-34 148.3 189 46.0
AUR62023389 Chenopodium quinoa HOM05D003718 ORTHO05D004402 1.0e-31 141.0 178 44.9
Nitab4.5_0005095g0020 Nicotiana tabacum HOM05D003718 ORTHO05D004402 1.2e-30 137.5 178 44.9
Nitab4.5_0001572g0020 Nicotiana tabacum HOM05D003718 ORTHO05D004402 5.7e-30 135.2 187 43.9
Nitab4.5_0000413g0180 Nicotiana tabacum HOM05D003718 ORTHO05D004402 1.6e-27 127.1 187 42.8
unitig_8.g3735 Utricularia gibba HOM05D003718 ORTHO05D004402 7.3e-25 118.2 179 39.7
Pp3c7_6480 Physcomitrium patens HOM05D003718 ORTHO05D004402 8.0e-24 114.8 186 41.9
Actinidia30158 Actinidia chinensis HOM05D003718 ORTHO05D004402 2.3e-23 113.2 69 72.5
Actinidia09538 Actinidia chinensis HOM05D003718 ORTHO05D004402 8.9e-23 111.3 85 64.7
arahy.Tifrunner.gnm1.ann1.6B4W14 Arachis hypogaea HOM05D003718 ORTHO05D004402 3.7e-21 105.9 119 48.7
Ah.05g177770 Amaranthus hybridus HOM05D003718 ORTHO05D004402 4.9e-21 105.5 69 71.0
arahy.Tifrunner.gnm1.ann1.EX0EXI Arachis hypogaea HOM05D004703 ORTHO05D005801 3.5e-19 99.4 112 50.0
AagrBONN_evm.TU.Sc2ySwM_340.234 Anthoceros agrestis HOM05D003718 ORTHO05D004402 1.7e-18 97.1 216 34.3
arahy.Tifrunner.gnm1.ann1.N0B60F Arachis hypogaea HOM05D003718 ORTHO05D004402 1.7e-18 97.1 112 49.1
CBR_g32152 Chara braunii HOM05D003718 ORTHO05D004402 3.0e-18 96.3 199 34.7
Nitab4.5_0005411g0050 Nicotiana tabacum HOM05D003718 ORTHO05D004402 5.8e-14 82.0 180 33.3
SMO367G0218 Selaginella moellendorffii HOM05D003718 ORTHO05D004402 4.1e-12 75.9 136 35.3
Actinidia09537 Actinidia chinensis HOM05D003718 ORTHO05D004402 3.3e-09 66.2 42 71.4
arahy.Tifrunner.gnm1.ann1.S1G2KX Arachis hypogaea HOM05D003718 ORTHO05D004402 7.3e-09 65.1 44 70.5


User provided reference genes

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