Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN27G1508 Fragaria x ananassa HOM05D005203 ORTHO05D006383 7.7e-258 893.3 443 100.0
FAN24G3349 Fragaria x ananassa HOM05D005203 ORTHO05D006383 9.5e-240 833.2 441 95.5
FvH4_2g16770 Fragaria vesca HOM05D005203 ORTHO05D006383 4.0e-238 827.8 442 94.1
FAN15G3115 Fragaria x ananassa HOM05D005203 ORTHO05D006383 4.9e-236 820.8 442 93.2
RcHm_v2.0_Chr6g0280891 Rosa chinensis HOM05D005203 ORTHO05D006383 1.9e-232 808.9 438 91.1
MD10G1141600 Malus domestica HOM05D005203 ORTHO05D006383 5.1e-217 757.7 435 85.3
Prupe.8G179800 Prunus persica HOM05D005203 ORTHO05D006383 1.4e-214 749.6 436 84.9
MD05G1138700 Malus domestica HOM05D005203 ORTHO05D006383 2.9e-212 741.9 433 83.8
CiPaw.06G115500 Carya illinoinensis HOM05D005203 ORTHO05D006383 3.3e-200 701.8 444 77.9
CANSAT25G3783 Cannabis sativa HOM05D005203 ORTHO05D006383 1.3e-199 699.9 437 78.7
GSVIVG01002028001 Vitis vinifera HOM05D005203 ORTHO05D006383 4.8e-199 698.0 439 78.1
Dinv41871 Davidia involucrata HOM05D005203 ORTHO05D006383 8.1e-199 697.2 434 77.9
Glyma.04G000400 Glycine max HOM05D005203 ORTHO05D006383 1.1e-198 696.8 442 76.5
Glyma.06G000300 Glycine max HOM05D005203 ORTHO05D006383 4.0e-198 694.9 442 76.7
CSS0012413 Camellia sinensis var. sinensis HOM05D005203 ORTHO05D006383 1.7e-196 689.5 434 76.7
ClCG02G003410 Citrullus lanatus HOM05D005203 ORTHO05D006383 1.4e-195 686.4 444 75.2
CsaV3_7G001910 Cucumis sativus L. HOM05D005203 ORTHO05D006383 3.2e-195 685.3 437 76.2
TWI75G1664 Tripterygium wilfordii HOM05D005203 ORTHO05D006383 3.2e-195 685.3 444 75.2
MELO3C013249.2 Cucumis melo HOM05D005203 ORTHO05D006383 2.7e-194 682.2 437 76.0
Lj1g0021981 Lotus japonicus HOM05D005203 ORTHO05D006383 4.6e-194 681.4 442 75.1
Phvul.009G115600 Phaseolus vulgaris HOM05D005203 ORTHO05D006383 1.0e-193 680.2 442 75.1
Peaxi162Scf00362g00132 Petunia axillaris HOM05D005203 ORTHO05D006383 1.1e-192 676.8 445 74.8
Thecc.02G146000 Theobroma cacao HOM05D005203 ORTHO05D006383 1.9e-192 676.0 436 76.1
Cfa005369 Carpinus fangiana HOM05D005203 ORTHO05D006383 9.6e-192 673.7 434 76.0
Eucgr.H04989 Eucalyptus grandis HOM05D005203 ORTHO05D006383 9.6e-192 673.7 439 74.7
Nn6g31681 Nelumbo nucifera HOM05D005203 ORTHO05D006383 1.3e-191 673.3 431 75.4
Atru.chr5.3533 Acer truncatum HOM05D005203 ORTHO05D006383 3.7e-191 671.8 439 76.1
Ciclev10028418m.g Citrus clementina HOM05D005203 ORTHO05D006383 6.2e-191 671.0 432 75.5
Ca_15273_v3 Cicer arietinum L. HOM05D005203 ORTHO05D006383 1.8e-190 669.5 442 74.0
Migut.B00006 Erythranthe guttata HOM05D005203 ORTHO05D006383 3.1e-190 668.7 437 73.2
Dinv14173 Davidia involucrata HOM05D005203 ORTHO05D006383 4.0e-190 668.3 465 71.8
TPR.G38553 Trifolium pratense HOM05D005203 ORTHO05D006383 5.3e-190 667.9 442 74.4
MSTRG.19946 Avicennia marina HOM05D005203 ORTHO05D006383 3.4e-189 665.2 432 73.8
PSO210G4213 Papaver somniferum HOM05D005203 ORTHO05D006383 3.4e-189 665.2 435 74.7
Cc09_g10810 Coffea canephora HOM05D005203 ORTHO05D006383 1.0e-188 663.7 447 73.8
Solyc01g112240.4 Solanum lycopersicum HOM05D005203 ORTHO05D006383 1.7e-188 662.9 434 73.7
PSO170G2598 Papaver somniferum HOM05D005203 ORTHO05D006383 2.2e-188 662.5 435 74.3
Potri.009G168000 Populus trichocarpa HOM05D005203 ORTHO05D006383 6.5e-188 661.0 445 73.5
Manes.11G110000 Manihot esculenta HOM05D005203 ORTHO05D006383 1.9e-187 659.4 442 74.0
HanXRQChr15g0476431 Helianthus annuus HOM05D005203 ORTHO05D006383 5.5e-187 657.9 439 72.4
Potri.004G206900 Populus trichocarpa HOM05D005203 ORTHO05D006383 9.3e-187 657.1 445 73.7
PGR042G0992 Punica granatum HOM05D005203 ORTHO05D006383 9.3e-187 657.1 434 75.8
Aqoxy5G00999 Aquilegia oxysepala HOM05D005203 ORTHO05D006383 2.7e-186 655.6 433 74.4
Gohir.D12G014000 Gossypium hirsutum HOM05D005203 ORTHO05D006383 2.7e-186 655.6 437 72.8
ECA246G3822 Erigeron canadensis HOM05D005203 ORTHO05D006383 1.3e-185 653.3 435 72.4
arahy.Tifrunner.gnm1.ann1.H6WGQ1 Arachis hypogaea HOM05D005203 ORTHO05D006383 5.1e-185 651.4 436 74.3
Gorai.008G014000 Gossypium raimondii HOM05D005203 ORTHO05D006383 6.7e-185 651.0 438 72.1
Gohir.A12G013200 Gossypium hirsutum HOM05D005203 ORTHO05D006383 1.1e-184 650.2 437 72.1
Lsat_1_v5_gn_3_48560 Lactuca sativa HOM05D005203 ORTHO05D006383 1.5e-184 649.8 432 73.1
Lalb_Chr08g0246871 Lupinus albus HOM05D005203 ORTHO05D006383 2.5e-184 649.0 439 74.3
Carub.0007s0018 Capsella rubella HOM05D005203 ORTHO05D006383 8.2e-183 644.0 436 72.2
Nitab4.5_0000783g0090 Nicotiana tabacum HOM05D005203 ORTHO05D006383 1.1e-182 643.7 460 70.2
Lsat_1_v5_gn_4_71380 Lactuca sativa HOM05D005203 ORTHO05D006383 1.2e-181 640.2 427 72.1
Sp7g37480 Schrenkiella parvula HOM05D005203 ORTHO05D006383 5.9e-181 637.9 426 72.5
HanXRQChr10g0298431 Helianthus annuus HOM05D005203 ORTHO05D006383 1.7e-180 636.3 434 71.0
AL7G10160 Arabidopsis lyrata HOM05D005203 ORTHO05D006383 3.8e-180 635.2 431 72.2
THA.LOC104824732 Tarenaya hassleriana HOM05D005203 ORTHO05D006383 3.8e-180 635.2 437 71.4
Sed0018804 Sechium edule HOM05D005203 ORTHO05D006383 5.0e-180 634.8 437 71.9
AT4G38240 Arabidopsis thaliana HOM05D005203 ORTHO05D006383 7.2e-179 630.9 431 71.0
ECA234G1180 Erigeron canadensis HOM05D005203 ORTHO05D006383 7.2e-179 630.9 429 71.8
MBI05_g33297_MAGBIO Magnolia biondii HOM05D005203 ORTHO05D006383 1.2e-178 630.2 409 75.3
BNapus_Darmor_BZH_scaffold_146p00070 Brassica napus HOM05D005203 ORTHO05D006383 1.0e-177 627.1 431 70.8
BolC7t46794H Brassica oleracea HOM05D005203 ORTHO05D006383 5.7e-176 621.3 447 68.2
BraA06t27778Z Brassica rapa HOM05D005203 ORTHO05D006383 1.7e-175 619.8 446 68.4
Os02g0832800 Oryza sativa ssp. japonica HOM05D005203 ORTHO05D006383 2.8e-175 619.0 432 70.8
Thhalv10025208m.g Eutrema salsugineum HOM05D005203 ORTHO05D006383 1.1e-174 617.1 421 70.5
CARHR294030 Cardamine hirsuta HOM05D005203 ORTHO05D006383 3.1e-174 615.5 432 70.4
SalBow1G5214 Salvia bowleyana HOM05D005203 ORTHO05D006383 6.9e-174 614.4 417 72.9
CiPaw.05G093000 Carya illinoinensis HOM05D005203 ORTHO05D006383 2.6e-173 612.5 456 69.3
Actinidia20576 Actinidia chinensis HOM05D005203 ORTHO05D006383 1.6e-170 603.2 416 71.6
Sc18g0005820 Simmondsia chinensis HOM05D005203 ORTHO05D006383 3.0e-169 599.0 397 72.3
Aa31LG6G16700 Aethionema arabicum HOM05D005203 ORTHO05D006383 3.7e-167 592.0 411 70.6
arahy.Tifrunner.gnm1.ann1.Z16TJ0 Arachis hypogaea HOM05D005203 ORTHO05D006383 2.0e-165 586.3 436 68.6
Psat5g000480 Pisum sativum HOM05D005203 ORTHO05D006383 4.7e-162 575.1 361 75.6
BcaNung01996 Brassica carinata HOM05D005203 ORTHO05D006383 1.3e-159 567.0 428 67.3
Eucgr.L00584 Eucalyptus grandis HOM05D005203 ORTHO05D006383 3.1e-158 562.4 342 77.5
Cpa.g.c28580 Carica papaya HOM05D005203 ORTHO05D006383 1.0e-156 557.4 432 65.5
SMO201G0157 Selaginella moellendorffii HOM05D005203 ORTHO05D006383 1.1e-155 553.9 431 64.0
CSS0021914 Camellia sinensis var. sinensis HOM05D005203 ORTHO05D006383 9.4e-155 550.8 383 70.2
CSS0022527 Camellia sinensis var. sinensis HOM05D005203 ORTHO05D006383 6.1e-154 548.1 383 70.0
vmacro02339 Vaccinium macrocarpon HOM05D005203 ORTHO05D006383 3.4e-152 542.3 649 48.1
Haze_02001 Corylus avellana HOM05D005203 ORTHO05D006383 3.7e-151 538.9 344 76.5
Oeu006117.1 Olea europaea HOM05D005203 ORTHO05D006383 1.1e-147 527.3 342 72.8
Zm00001eb421090 Zea mays HOM05D005203 ORTHO05D006383 4.2e-147 525.4 378 68.3
Sabra09G0130500 Salix brachista HOM05D005203 ORTHO05D006383 8.3e-143 511.1 428 64.0
Mapoly0041s0049 Marchantia polymorpha HOM05D005203 ORTHO05D006383 3.8e-140 502.3 431 56.6
Pp3c22_17330 Physcomitrium patens HOM05D005203 ORTHO05D006383 6.8e-137 491.5 445 57.8
DCAR_026076 Daucus carota HOM05D005203 ORTHO05D006383 4.5e-133 478.8 387 62.5
SGA_v2.0_scaffold399G50809 Striga asiatica HOM05D005203 ORTHO05D006383 5.9e-133 478.4 491 54.4
Cfa005368 Carpinus fangiana HOM05D005203 ORTHO05D006383 3.9e-132 475.7 330 72.7
Aa31LG1G14200 Aethionema arabicum HOM05D005203 ORTHO05D006383 8.0e-130 468.0 428 58.6
HPP92_004948 Vanilla planifolia HOM05D005203 ORTHO05D006383 3.4e-128 462.6 431 56.4
Sabra04G0139200 Salix brachista HOM05D005203 ORTHO05D006383 4.4e-128 462.2 442 58.4
VMungo1309G0298 Vigna mungo HOM05D005203 ORTHO05D006383 1.7e-127 460.3 286 78.3
QL11p056319 Quercus lobata HOM05D005203 ORTHO05D006383 2.9e-127 459.5 282 79.1
Lj5A171G136 Lonicera japonica HOM05D005203 ORTHO05D006383 6.4e-127 458.4 286 77.3
AagrBONN_evm.TU.Sc2ySwM_362.2915 Anthoceros agrestis HOM05D005203 ORTHO05D006383 8.3e-127 458.0 444 55.0
Medtr3g118520 Medicago truncatula HOM05D005203 ORTHO05D006383 2.4e-126 456.4 286 78.7
HPP92_022155 Vanilla planifolia HOM05D005203 ORTHO05D006383 9.2e-126 454.5 439 54.4
Sopen01g054300 Solanum pennellii HOM05D005203 ORTHO05D006383 2.6e-120 436.4 283 74.9
Rhsim11G0198000 Rhododendron simsii HOM05D005203 ORTHO05D006383 7.5e-120 434.9 382 61.8
AUR62013174 Chenopodium quinoa HOM05D005203 ORTHO05D006383 1.7e-116 423.7 438 53.4
Pp3c12_4490 Physcomitrium patens HOM05D005203 ORTHO05D006383 2.3e-116 423.3 363 57.0
TAR376G0977 Trochodendron aralioides HOM05D005203 ORTHO05D006383 3.9e-116 422.5 433 55.0
ATR0807G194 Amborella trichopoda HOM05D005203 ORTHO05D006383 1.5e-115 420.6 287 72.8
CDE07G0143 Ceratophyllum demersum HOM05D005203 ORTHO05D006383 4.3e-107 392.5 288 67.0
CBR_g40811 Chara braunii HOM05D005203 ORTHO05D006383 2.1e-106 390.2 445 46.1
Hund06364 Selenicereus undatus HOM05D005203 ORTHO05D006383 1.1e-105 387.9 403 53.8
EL10Ac9g21529 Beta vulgaris HOM05D005203 ORTHO05D006383 1.4e-105 387.5 432 50.9
COL.COLO4_19776 Corchorus olitorius HOM05D005203 ORTHO05D006383 1.5e-99 367.5 433 50.1
PGSC0003DMG402014680 Solanum tuberosum HOM05D005203 ORTHO05D006383 3.6e-98 362.8 211 80.1
AUR62010173 Chenopodium quinoa HOM05D005203 ORTHO05D006383 1.1e-97 361.3 439 46.7
CAN.G1725.2 Capsicum annuum HOM05D005203 ORTHO05D006383 3.1e-97 359.8 211 81.0
TAR628G1330 Trochodendron aralioides HOM05D005203 ORTHO05D006383 1.9e-91 340.5 410 49.5
MCO10G329 Micromonas commoda HOM05D005203 ORTHO05D006383 8.4e-79 298.5 340 46.5
Eucgr.L00583 Eucalyptus grandis HOM05D005203 ORTHO05D006383 1.5e-72 277.7 152 86.2
CSS0033501 Camellia sinensis var. sinensis HOM05D005203 ORTHO05D006383 1.4e-70 271.2 163 79.1
CSS0046634 Camellia sinensis var. sinensis HOM05D005203 ORTHO05D006383 1.4e-70 271.2 163 79.1
CSS0007702 Camellia sinensis var. sinensis HOM05D005203 ORTHO05D006383 2.7e-69 266.9 163 77.9
Ah.01g009970 Amaranthus hybridus HOM05D005203 ORTHO05D006383 2.3e-60 237.3 180 63.3
ATR0807G110 Amborella trichopoda HOM05D005203 ORTHO05D006383 1.0e-55 221.9 141 72.3
Medtr3g118525 Medicago truncatula HOM05D005203 ORTHO05D006383 5.9e-48 196.1 127 72.4
QL11p056323 Quercus lobata HOM05D005203 ORTHO05D006383 7.7e-48 195.7 119 75.6
VMungo1309G1049 Vigna mungo HOM05D005203 ORTHO05D006383 1.9e-46 191.0 127 69.3
Eucgr.H04987 Eucalyptus grandis HOM05D005203 ORTHO05D006383 4.2e-46 189.9 124 70.2
CDE07G2075 Ceratophyllum demersum HOM05D005203 ORTHO05D006383 9.1e-41 172.2 121 62.8
GSVIVG01002907001 Vitis vinifera HOM05D005203 ORTHO05D006383 1.6e-40 171.4 95 86.3
Lj5A171G135 Lonicera japonica HOM05D005203 ORTHO05D006383 4.5e-40 169.9 123 68.3
MCO01G683 Micromonas commoda HOM05D005203 ORTHO05D006383 3.4e-35 153.7 316 32.6
Nitab4.5_0010601g0030 Nicotiana tabacum HOM05D005203 ORTHO05D006383 1.7e-34 151.4 163 50.9
CANSAT78G0806 Cannabis sativa HOM05D005203 ORTHO05D006383 3.7e-34 150.2 105 72.4
AL7G13060 Arabidopsis lyrata HOM05D005203 ORTHO05D006383 1.2e-32 145.2 112 65.2
Sc18g0005790 Simmondsia chinensis HOM05D005203 ORTHO05D006383 6.3e-26 122.9 97 60.8
PGSC0003DMG403014680 Solanum tuberosum HOM05D005203 ORTHO05D006383 1.1e-22 112.1 75 69.3
Sed0000358 Sechium edule HOM05D005203 ORTHO05D006383 9.5e-22 109.0 104 52.9
GSVIVG01002825001 Vitis vinifera HOM05D005203 ORTHO05D006383 2.0e-16 91.3 69 66.7
SEGI_16108 Sequoiadendron giganteum HOM05D005203 ORTHO05D006383 1.3e-15 88.6 61 68.9
AL6G14740 Arabidopsis lyrata HOM05D005203 ORTHO05D006383 5.0e-15 86.7 45 86.7
CAN.G1725.1 Capsicum annuum HOM05D005203 ORTHO05D006383 3.3e-14 84.0 69 66.7
CAN.G533.11 Capsicum annuum HOM05D005203 ORTHO05D006383 1.6e-13 81.6 48 72.9
PGSC0003DMG401014680 Solanum tuberosum HOM05D005203 ORTHO05D006383 3.6e-13 80.5 66 65.2


User provided reference genes

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