Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN27G1498 Fragaria x ananassa HOM05D005689 ORTHO05D007060 1.0e-78 296.6 144 100.0
FvH4_2g15500 Fragaria vesca HOM05D005689 ORTHO05D007060 3.0e-78 295.0 144 99.3
FAN15G3340 Fragaria x ananassa HOM05D005689 ORTHO05D007060 3.0e-78 295.0 144 99.3
RcHm_v2.0_Chr6g0278501 Rosa chinensis HOM05D005689 ORTHO05D007060 6.7e-78 293.9 144 98.6
FAN20G0310 Fragaria x ananassa HOM05D005689 ORTHO05D007060 1.5e-77 292.7 144 98.6
FAN24G0830 Fragaria x ananassa HOM05D005689 ORTHO05D007060 2.6e-77 292.0 144 98.6
MD05G1123300 Malus domestica HOM05D005689 ORTHO05D007060 3.7e-76 288.1 144 96.5
Prupe.8G167200 Prunus persica HOM05D005689 ORTHO05D007060 8.2e-76 287.0 144 95.8
MD10G1126300 Malus domestica HOM05D005689 ORTHO05D007060 4.1e-75 284.6 144 95.1
Duzib132G1056 Durio zibethinus HOM05D005689 ORTHO05D007060 5.9e-74 280.8 144 93.1
Atru.chr5.3380 Acer truncatum HOM05D005689 ORTHO05D007060 2.9e-73 278.5 144 92.4
CSS0016500 Camellia sinensis var. sinensis HOM05D005689 ORTHO05D007060 3.8e-73 278.1 144 91.7
VMungo1383G2472 Vigna mungo HOM05D005689 ORTHO05D007060 3.8e-73 278.1 144 92.4
GSVIVG01024004001 Vitis vinifera HOM05D005689 ORTHO05D007060 3.8e-73 278.1 144 91.7
MSTRG.19983 Avicennia marina HOM05D005689 ORTHO05D007060 6.5e-73 277.3 144 91.7
Ciclev10029529m.g Citrus clementina HOM05D005689 ORTHO05D007060 6.5e-73 277.3 144 91.0
Thecc.02G057800 Theobroma cacao HOM05D005689 ORTHO05D007060 6.5e-73 277.3 144 91.7
Duzib248G0128 Durio zibethinus HOM05D005689 ORTHO05D007060 1.1e-72 276.6 144 91.7
Eucgr.I01435 Eucalyptus grandis HOM05D005689 ORTHO05D007060 1.1e-72 276.6 144 91.0
Cc09_g09830 Coffea canephora HOM05D005689 ORTHO05D007060 1.9e-72 275.8 144 90.3
Glyma.18G247400 Glycine max HOM05D005689 ORTHO05D007060 1.9e-72 275.8 144 91.7
Gohir.D02G226800 Gossypium hirsutum HOM05D005689 ORTHO05D007060 1.9e-72 275.8 142 91.5
Actinidia20518 Actinidia chinensis HOM05D005689 ORTHO05D007060 2.5e-72 275.4 144 91.0
ClCG02G003990 Citrullus lanatus HOM05D005689 ORTHO05D007060 2.5e-72 275.4 141 92.2
MELO3C013345.2 Cucumis melo HOM05D005689 ORTHO05D007060 2.5e-72 275.4 141 92.2
CsaV3_7G001110 Cucumis sativus L. HOM05D005689 ORTHO05D007060 2.5e-72 275.4 141 92.2
Gohir.A03G205500 Gossypium hirsutum HOM05D005689 ORTHO05D007060 2.5e-72 275.4 141 92.2
Gorai.005G254700 Gossypium raimondii HOM05D005689 ORTHO05D007060 2.5e-72 275.4 141 92.2
Medtr7g081040 Medicago truncatula HOM05D005689 ORTHO05D007060 2.5e-72 275.4 144 91.7
Phvul.008G049900 Phaseolus vulgaris HOM05D005689 ORTHO05D007060 2.5e-72 275.4 144 91.0
PGR142G2796 Punica granatum HOM05D005689 ORTHO05D007060 2.5e-72 275.4 144 90.3
Sed0024195 Sechium edule HOM05D005689 ORTHO05D007060 2.5e-72 275.4 141 92.2
CiPaw.05G083600 Carya illinoinensis HOM05D005689 ORTHO05D007060 3.2e-72 275.0 144 89.6
QL11p051049 Quercus lobata HOM05D005689 ORTHO05D007060 3.2e-72 275.0 143 91.6
Ca_08042_v3 Cicer arietinum L. HOM05D005689 ORTHO05D007060 4.2e-72 274.6 144 91.0
Glyma.09G245600 Glycine max HOM05D005689 ORTHO05D007060 4.2e-72 274.6 144 91.0
Peaxi162Scf00362g00537 Petunia axillaris HOM05D005689 ORTHO05D007060 4.2e-72 274.6 144 90.3
TPR.G32114 Trifolium pratense HOM05D005689 ORTHO05D007060 4.2e-72 274.6 144 91.0
Migut.B00070 Erythranthe guttata HOM05D005689 ORTHO05D007060 5.5e-72 274.2 144 91.0
Manes.04G071800 Manihot esculenta HOM05D005689 ORTHO05D007060 5.5e-72 274.2 144 90.3
vmacro02282 Vaccinium macrocarpon HOM05D005689 ORTHO05D007060 5.5e-72 274.2 144 90.3
Dinv41928 Davidia involucrata HOM05D005689 ORTHO05D007060 7.2e-72 273.9 144 90.3
Lj1g0014054 Lotus japonicus HOM05D005689 ORTHO05D007060 9.4e-72 273.5 144 90.3
Nitab4.5_0003698g0100 Nicotiana tabacum HOM05D005689 ORTHO05D007060 9.4e-72 273.5 144 90.3
Potri.009G136800 Populus trichocarpa HOM05D005689 ORTHO05D007060 9.4e-72 273.5 144 91.0
TWI31G0315 Tripterygium wilfordii HOM05D005689 ORTHO05D007060 1.2e-71 273.1 141 90.8
Cfa005260 Carpinus fangiana HOM05D005689 ORTHO05D007060 1.6e-71 272.7 144 90.3
Hma1.2p1_0032F.1_g019300 Hydrangea macrophylla HOM05D005689 ORTHO05D007060 1.6e-71 272.7 144 90.3
Actinidia00628 Actinidia chinensis HOM05D005689 ORTHO05D007060 2.7e-71 271.9 144 89.6
Cpa.g.sc20.100 Carica papaya HOM05D005689 ORTHO05D007060 2.7e-71 271.9 144 89.6
Aqoxy6G02106 Aquilegia oxysepala HOM05D005689 ORTHO05D007060 3.6e-71 271.6 141 88.7
Sc18g0006380 Simmondsia chinensis HOM05D005689 ORTHO05D007060 3.6e-71 271.6 144 88.9
CiPaw.06G120900 Carya illinoinensis HOM05D005689 ORTHO05D007060 6.1e-71 270.8 144 89.6
Hund06443 Selenicereus undatus HOM05D005689 ORTHO05D007060 6.1e-71 270.8 143 88.8
Solyc01g111690.3 Solanum lycopersicum HOM05D005689 ORTHO05D007060 6.1e-71 270.8 141 90.8
Sopen01g053730 Solanum pennellii HOM05D005689 ORTHO05D007060 6.1e-71 270.8 141 90.8
EL10Ac9g21356 Beta vulgaris HOM05D005689 ORTHO05D007060 1.0e-70 270.0 144 88.2
ECA233G5373 Erigeron canadensis HOM05D005689 ORTHO05D007060 1.0e-70 270.0 144 88.2
CAN.G588.89 Capsicum annuum HOM05D005689 ORTHO05D007060 1.4e-70 269.6 144 88.9
Lsat_1_v5_gn_8_123161 Lactuca sativa HOM05D005689 ORTHO05D007060 1.4e-70 269.6 144 87.5
HanXRQChr03g0080211 Helianthus annuus HOM05D005689 ORTHO05D007060 3.0e-70 268.5 144 87.5
CANSAT25G1424 Cannabis sativa HOM05D005689 ORTHO05D007060 4.0e-70 268.1 141 90.1
Lalb_Chr21g0306961 Lupinus albus HOM05D005689 ORTHO05D007060 4.0e-70 268.1 144 88.2
AUR62013016 Chenopodium quinoa HOM05D005689 ORTHO05D007060 5.2e-70 267.7 144 86.8
PGSC0003DMG400006181 Solanum tuberosum HOM05D005689 ORTHO05D007060 5.2e-70 267.7 141 90.1
TWI75G0361 Tripterygium wilfordii HOM05D005689 ORTHO05D007060 5.2e-70 267.7 141 88.7
AUR62010026 Chenopodium quinoa HOM05D005689 ORTHO05D007060 8.8e-70 266.9 144 87.5
unitig_0.g36 Utricularia gibba HOM05D005689 ORTHO05D007060 2.0e-69 265.8 141 87.9
MBI12_g17551_MAGBIO Magnolia biondii HOM05D005689 ORTHO05D007060 2.6e-69 265.4 142 85.9
TAR376G1105 Trochodendron aralioides HOM05D005689 ORTHO05D007060 3.4e-69 265.0 144 86.1
PSO675G8512 Papaver somniferum HOM05D005689 ORTHO05D007060 3.7e-68 261.5 141 86.5
PSO541G0653 Papaver somniferum HOM05D005689 ORTHO05D007060 8.3e-68 260.4 141 85.8
DCAR_003179 Daucus carota HOM05D005689 ORTHO05D007060 1.8e-67 259.2 142 85.9
Nitab4.5_0000283g0450 Nicotiana tabacum HOM05D005689 ORTHO05D007060 2.4e-67 258.8 154 83.1
Os09g0541500 Oryza sativa ssp. japonica HOM05D005689 ORTHO05D007060 5.4e-67 257.7 144 81.9
Zm00001eb331790 Zea mays HOM05D005689 ORTHO05D007060 5.4e-67 257.7 138 85.5
Oeu019918.2 Olea europaea HOM05D005689 ORTHO05D007060 1.2e-66 256.5 170 74.1
SalBow5G2226 Salvia bowleyana HOM05D005689 ORTHO05D007060 2.0e-66 255.8 167 75.4
DCAR_030423 Daucus carota HOM05D005689 ORTHO05D007060 2.7e-66 255.4 141 85.1
Sp4g00120 Schrenkiella parvula HOM05D005689 ORTHO05D007060 7.7e-66 253.8 140 83.6
Aa31LG6G16620 Aethionema arabicum HOM05D005689 ORTHO05D007060 1.0e-65 253.4 140 84.3
AT2G20930 Arabidopsis thaliana HOM05D005689 ORTHO05D007060 1.0e-65 253.4 140 84.3
BcaB08g34950 Brassica carinata HOM05D005689 ORTHO05D007060 1.0e-65 253.4 140 83.6
BcaC07g41181 Brassica carinata HOM05D005689 ORTHO05D007060 1.0e-65 253.4 140 83.6
Thhalv10026520m.g Eutrema salsugineum HOM05D005689 ORTHO05D007060 1.0e-65 253.4 140 83.6
CDE02G0259 Ceratophyllum demersum HOM05D005689 ORTHO05D007060 1.3e-65 253.1 138 83.3
Psat3g100360 Pisum sativum HOM05D005689 ORTHO05D007060 1.3e-65 253.1 130 90.8
SalBow1G8746 Salvia bowleyana HOM05D005689 ORTHO05D007060 1.7e-65 252.7 140 85.7
Carub.0004s0002 Capsella rubella HOM05D005689 ORTHO05D007060 2.3e-65 252.3 140 83.6
THA.LOC104824758 Tarenaya hassleriana HOM05D005689 ORTHO05D007060 2.3e-65 252.3 137 86.1
AL4G10060 Arabidopsis lyrata HOM05D005689 ORTHO05D007060 2.9e-65 251.9 140 83.6
CARHR174210 Cardamine hirsuta HOM05D005689 ORTHO05D007060 6.5e-65 250.8 140 83.6
HPP92_012947 Vanilla planifolia HOM05D005689 ORTHO05D007060 8.6e-65 250.4 138 83.3
BcaNung01978 Brassica carinata HOM05D005689 ORTHO05D007060 1.9e-64 249.2 140 81.4
A06p48990 Brassica napus HOM05D005689 ORTHO05D007060 1.2e-63 246.5 140 80.7
BraA06t27765Z Brassica rapa HOM05D005689 ORTHO05D007060 1.2e-63 246.5 140 80.7
SEGI_29883 Sequoiadendron giganteum HOM05D005689 ORTHO05D007060 1.6e-63 246.1 138 81.9
C07p63680 Brassica napus HOM05D005689 ORTHO05D007060 4.7e-63 244.6 140 79.3
BolC7t46781H Brassica oleracea HOM05D005689 ORTHO05D007060 4.7e-63 244.6 140 79.3
Sabra09G0106300 Salix brachista HOM05D005689 ORTHO05D007060 1.0e-62 243.4 208 62.5
Thhalv10000369m.g Eutrema salsugineum HOM05D005689 ORTHO05D007060 1.4e-62 243.0 140 81.4
arahy.Tifrunner.gnm1.ann1.9U6RFS Arachis hypogaea HOM05D005689 ORTHO05D007060 1.8e-62 242.7 202 63.4
A09p58620 Brassica napus HOM05D005689 ORTHO05D007060 3.0e-62 241.9 140 81.4
C08p41910 Brassica napus HOM05D005689 ORTHO05D007060 3.0e-62 241.9 140 81.4
BolC8t51754H Brassica oleracea HOM05D005689 ORTHO05D007060 3.0e-62 241.9 140 81.4
BraA09t41249Z Brassica rapa HOM05D005689 ORTHO05D007060 3.0e-62 241.9 140 81.4
Sp7g37220 Schrenkiella parvula HOM05D005689 ORTHO05D007060 4.0e-62 241.5 140 81.4
Aa31LG7G15690 Aethionema arabicum HOM05D005689 ORTHO05D007060 2.0e-61 239.2 168 70.8
Mapoly0010s0009 Marchantia polymorpha HOM05D005689 ORTHO05D007060 5.7e-61 237.7 138 79.0
SalBow5G0288 Salvia bowleyana HOM05D005689 ORTHO05D007060 2.8e-60 235.3 156 74.4
Sed0010745 Sechium edule HOM05D005689 ORTHO05D007060 8.3e-60 233.8 141 80.1
Pp3c13_19460 Physcomitrium patens HOM05D005689 ORTHO05D007060 2.3e-57 225.7 144 70.1
ATR0315G041 Amborella trichopoda HOM05D005689 ORTHO05D007060 2.9e-57 225.3 129 79.8
BcaC07g41184 Brassica carinata HOM05D005689 ORTHO05D007060 1.1e-56 223.4 140 75.7
Pp3c12_10830 Physcomitrium patens HOM05D005689 ORTHO05D007060 2.6e-53 212.2 138 68.8
HPP92_007243 Vanilla planifolia HOM05D005689 ORTHO05D007060 4.1e-51 204.9 119 80.7
SMO228G0084 Selaginella moellendorffii HOM05D005689 ORTHO05D007060 2.0e-50 202.6 138 63.8
SGA_v2.0_scaffold80G25838 Striga asiatica HOM05D005689 ORTHO05D007060 1.7e-49 199.5 160 63.8
CARHR111830 Cardamine hirsuta HOM05D005689 ORTHO05D007060 3.9e-49 198.4 114 79.8
CBR_g33926 Chara braunii HOM05D000604 ORTHO05D004856 3.9e-49 198.4 133 65.4
arahy.Tifrunner.gnm1.ann1.B1HGXN Arachis hypogaea HOM05D005689 ORTHO05D007060 5.6e-48 194.5 99 92.9
Nitab4.5_0000079g0270 Nicotiana tabacum HOM05D005689 ORTHO05D007060 1.2e-47 193.4 100 88.0
Nn6g31939 Nelumbo nucifera HOM05D005689 ORTHO05D007060 3.1e-46 188.7 97 88.7
Potri.004G176500 Populus trichocarpa HOM05D005689 ORTHO05D007060 5.0e-41 171.4 117 71.8
Cre03.g165650 Chlamydomonas reinhardtii HOM05D005689 ORTHO05D007060 2.0e-29 132.9 139 49.6
Rhsim11G0192800 Rhododendron simsii HOM05D005689 ORTHO05D007060 2.0e-29 132.9 74 85.1
AUR62017814 Chenopodium quinoa HOM05D005689 ORTHO05D007060 3.2e-27 125.6 74 79.7
RcHm_v2.0_Chr4g0392001 Rosa chinensis HOM05D005689 ORTHO05D007060 4.1e-27 125.2 140 50.7
AUR62003497 Chenopodium quinoa HOM05D005689 ORTHO05D007060 9.2e-27 124.0 74 78.4
Oeu028973.1 Olea europaea HOM05D005689 ORTHO05D007060 1.6e-26 123.2 74 78.4
Ah.01g023120 Amaranthus hybridus HOM05D005689 ORTHO05D007060 8.7e-17 90.9 43 93.0
PRCOL_00005825 Prasinoderma coloniale HOM05D005689 ORTHO05D007060 2.9e-12 75.9 115 39.1
MCO02G011 Micromonas commoda HOM05D005689 ORTHO05D007060 6.4e-12 74.7 157 29.9
HanXRQChr05g0150591 Helianthus annuus HOM05D005689 ORTHO05D007060 1.6e-10 70.1 44 75.0
SGA_v2.0_scaffold199G41205 Striga asiatica HOM05D005689 ORTHO05D007060 1.6e-10 70.1 53 60.4
Cre13.g571600 Chlamydomonas reinhardtii HOM05D004554 ORTHO05D005360 9.6e-08 60.8 132 29.5
C03p66780 Brassica napus HOM05D046457 ORTHO05D032727 2.4e-06 56.2 83 38.6
SGA_v2.0_scaffold11G05770 Striga asiatica HOM05D005689 ORTHO05D004382 3.1e-06 55.8 36 63.9


User provided reference genes

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