Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN27G1467 Fragaria x ananassa HOM05D005414 ORTHO05D006844 1.8e-131 472.6 248 100.0
FvH4_2g12810 Fragaria vesca HOM05D005414 ORTHO05D006844 2.3e-126 455.7 248 96.8
RcHm_v2.0_Chr6g0273701 Rosa chinensis HOM05D005414 ORTHO05D006844 6.1e-111 404.4 248 83.9
Prupe.8G044100 Prunus persica HOM05D005414 ORTHO05D006844 3.6e-95 352.1 248 73.8
FAN24G1739 Fragaria x ananassa HOM05D005414 ORTHO05D006844 1.4e-94 350.1 265 75.8
FAN15G1775 Fragaria x ananassa HOM05D005414 ORTHO05D006844 1.3e-92 343.6 280 71.8
MD10G1038100 Malus domestica HOM05D005414 ORTHO05D006844 3.8e-89 332.0 248 70.2
Ciclev10002272m.g Citrus clementina HOM05D005414 ORTHO05D006844 1.7e-84 316.6 245 66.9
Atru.chr13.1979 Acer truncatum HOM05D005414 ORTHO05D006844 4.9e-84 315.1 241 69.3
Potri.002G062600 Populus trichocarpa HOM05D005414 ORTHO05D006844 6.4e-84 314.7 240 69.2
Lj5g0014662 Lotus japonicus HOM05D005414 ORTHO05D006844 8.3e-84 314.3 242 66.9
Sabra05G0151200 Salix brachista HOM05D005414 ORTHO05D006844 1.2e-82 310.5 238 68.1
Actinidia17760 Actinidia chinensis HOM05D005414 ORTHO05D006844 1.6e-82 310.1 238 68.1
Eucgr.F02672 Eucalyptus grandis HOM05D005414 ORTHO05D006844 1.0e-81 307.4 234 68.8
Thecc.08G163500 Theobroma cacao HOM05D005414 ORTHO05D006844 3.9e-81 305.4 235 67.7
Duzib041G0057 Durio zibethinus HOM05D005414 ORTHO05D006844 1.1e-80 303.9 237 66.7
GSVIVG01013697001 Vitis vinifera HOM05D005414 ORTHO05D006844 1.5e-80 303.5 221 69.7
CiPaw.16G007400 Carya illinoinensis HOM05D005414 ORTHO05D006844 5.6e-80 301.6 240 65.0
CSS0029717 Camellia sinensis var. sinensis HOM05D005414 ORTHO05D006844 7.3e-80 301.2 238 66.8
Glyma.20G171300 Glycine max HOM05D005414 ORTHO05D006844 1.6e-79 300.1 238 63.4
CSS0025663 Camellia sinensis var. sinensis HOM05D005414 ORTHO05D006844 3.6e-79 298.9 238 66.0
Lalb_Chr02g0141631 Lupinus albus HOM05D005414 ORTHO05D006844 4.7e-79 298.5 238 62.2
VMungo0720G1060 Vigna mungo HOM05D005414 ORTHO05D006844 8.0e-79 297.7 242 62.0
Phvul.007G085100 Phaseolus vulgaris HOM05D005414 ORTHO05D006844 6.8e-78 294.7 243 63.4
Cc10_g06420 Coffea canephora HOM05D005414 ORTHO05D006844 8.9e-78 294.3 238 64.7
Gohir.A06G116400 Gossypium hirsutum HOM05D005414 ORTHO05D006844 1.2e-77 293.9 243 64.2
Rhsim06G0093200 Rhododendron simsii HOM05D005414 ORTHO05D006844 1.2e-77 293.9 238 66.0
TPR.G17052 Trifolium pratense HOM05D005414 ORTHO05D006844 9.8e-77 290.8 247 61.9
Gorai.010G131400 Gossypium raimondii HOM05D005414 ORTHO05D006844 2.2e-76 289.7 238 64.7
Gohir.D06G114900 Gossypium hirsutum HOM05D005414 ORTHO05D006844 3.2e-75 285.8 243 63.4
arahy.Tifrunner.gnm1.ann1.X1PAW1 Arachis hypogaea HOM05D005414 ORTHO05D006844 5.4e-75 285.0 235 63.0
Solyc04g072050.4 Solanum lycopersicum HOM05D005414 ORTHO05D006844 9.2e-75 284.3 244 59.0
Sopen04g028220 Solanum pennellii HOM05D005414 ORTHO05D006844 9.2e-75 284.3 244 59.0
PGSC0003DMG400031145 Solanum tuberosum HOM05D005414 ORTHO05D006844 1.2e-74 283.9 245 59.2
Hma1.2p1_2282F.1_g318850 Hydrangea macrophylla HOM05D005414 ORTHO05D006844 1.6e-74 283.5 238 64.3
Phvul.007G085000 Phaseolus vulgaris HOM05D005414 ORTHO05D006844 3.5e-74 282.3 242 60.7
arahy.Tifrunner.gnm1.ann1.66PYZ2 Arachis hypogaea HOM05D005414 ORTHO05D006844 4.6e-74 282.0 235 62.1
Medtr1g097430 Medicago truncatula HOM05D005414 ORTHO05D006844 1.3e-73 280.4 230 61.7
Psat6g189560 Pisum sativum HOM05D005414 ORTHO05D006844 2.3e-73 279.6 230 61.7
Migut.C00158 Erythranthe guttata HOM05D005414 ORTHO05D006844 8.6e-73 277.7 245 58.8
PGR042G0638 Punica granatum HOM05D005414 ORTHO05D006844 2.5e-72 276.2 243 60.9
HanXRQChr05g0144171 Helianthus annuus HOM05D005414 ORTHO05D006844 2.1e-71 273.1 248 59.3
MBI04_g42207_MAGBIO Magnolia biondii HOM05D005414 ORTHO05D006844 1.4e-70 270.4 258 56.2
Sc26g0002600 Simmondsia chinensis HOM05D005414 ORTHO05D006844 1.8e-70 270.0 238 59.2
Manes.18G096200 Manihot esculenta HOM05D005414 ORTHO05D006844 2.3e-70 269.6 207 65.2
PSO210G6322 Papaver somniferum HOM05D005414 ORTHO05D006844 4.0e-70 268.9 240 60.0
PSO170G2436 Papaver somniferum HOM05D005414 ORTHO05D006844 6.8e-70 268.1 244 59.0
SalBow7G3693 Salvia bowleyana HOM05D005414 ORTHO05D006844 1.5e-69 266.9 237 58.6
SGA_v2.0_scaffold188G40302 Striga asiatica HOM05D005414 ORTHO05D006844 1.5e-69 266.9 237 58.6
Peaxi162Scf00226g00114 Petunia axillaris HOM05D005414 ORTHO05D006844 1.3e-68 263.8 265 55.5
Nn5g28873 Nelumbo nucifera HOM05D005414 ORTHO05D000799 3.7e-68 262.3 196 68.4
vmacro21198 Vaccinium macrocarpon HOM05D005414 ORTHO05D006844 2.4e-67 259.6 233 61.8
ECA232G1443 Erigeron canadensis HOM05D005414 ORTHO05D006844 5.4e-67 258.5 235 57.9
Oeu061453.3 Olea europaea HOM05D005414 ORTHO05D006844 1.2e-66 257.3 207 65.7
TAR628G0132 Trochodendron aralioides HOM05D005414 ORTHO05D000799 2.3e-65 253.1 197 65.5
QL02p036452 Quercus lobata HOM05D005414 ORTHO05D006844 5.1e-65 251.9 217 61.8
MSTRG.24938 Avicennia marina HOM05D005414 ORTHO05D006844 8.6e-65 251.1 233 58.8
Glyma.20G171400 Glycine max HOM05D005414 ORTHO05D006844 1.1e-64 250.8 240 55.0
THA.LOC104809748 Tarenaya hassleriana HOM05D005414 ORTHO05D006844 1.1e-64 250.8 241 54.8
Zm00001eb385480 Zea mays HOM05D005414 ORTHO05D006844 1.9e-64 250.0 242 52.1
CDE05G3275 Ceratophyllum demersum HOM05D005414 ORTHO05D006844 7.3e-64 248.1 237 53.2
Os06g0581300 Oryza sativa ssp. japonica HOM05D005414 ORTHO05D006844 9.5e-64 247.7 242 51.7
CDE05G1245 Ceratophyllum demersum HOM05D005414 ORTHO05D006844 6.2e-63 245.0 219 55.7
TWI60G0913 Tripterygium wilfordii HOM05D005414 ORTHO05D006844 1.1e-62 244.2 210 61.0
Aa31LG7G6700 Aethionema arabicum HOM05D005414 ORTHO05D006844 3.1e-62 242.7 236 55.5
Thhalv10008541m.g Eutrema salsugineum HOM05D005414 ORTHO05D006844 3.1e-62 242.7 249 54.2
unitig_32.g11168 Utricularia gibba HOM05D005414 ORTHO05D006844 5.2e-62 241.9 239 55.6
Solyc04g072031.1 Solanum lycopersicum HOM05D005414 ORTHO05D006844 6.8e-62 241.5 201 59.2
BolC5t30882H Brassica oleracea HOM05D005414 ORTHO05D006844 8.9e-62 241.1 249 55.0
A09p41990 Brassica napus HOM05D005414 ORTHO05D006844 7.6e-61 238.0 249 54.2
BraA09t39686Z Brassica rapa HOM05D005414 ORTHO05D006844 7.6e-61 238.0 249 54.2
BcaNung07190 Brassica carinata HOM05D005414 ORTHO05D006844 9.9e-61 237.7 249 54.2
Sp1g20260 Schrenkiella parvula HOM05D005414 ORTHO05D006844 9.9e-61 237.7 249 53.4
Sed0023257 Sechium edule HOM05D005414 ORTHO05D006844 9.9e-61 237.7 244 54.5
BcaNung07397 Brassica carinata HOM05D005414 ORTHO05D006844 1.3e-60 237.3 249 53.8
C05p21870 Brassica napus HOM05D005414 ORTHO05D006844 1.7e-60 236.9 249 53.8
Aqoxy5G02011 Aquilegia oxysepala HOM05D005414 ORTHO05D006844 2.2e-60 236.5 195 61.0
CAN.G564.21 Capsicum annuum HOM05D005414 ORTHO05D006844 6.4e-60 235.0 196 60.7
Carub.0001s2226 Capsella rubella HOM05D005414 ORTHO05D006844 1.9e-59 233.4 249 53.8
AL1G36290 Arabidopsis lyrata HOM05D005414 ORTHO05D006844 3.2e-59 232.6 249 53.4
MELO3C030042.2 Cucumis melo HOM05D005414 ORTHO05D006844 3.2e-59 232.6 241 53.5
CsaV3_6G004870 Cucumis sativus L. HOM05D005414 ORTHO05D006844 2.7e-58 229.6 250 52.4
DCAR_009609 Daucus carota HOM05D005414 ORTHO05D006844 1.5e-56 223.8 181 64.6
AT1G22750 Arabidopsis thaliana HOM05D005414 ORTHO05D006844 1.9e-56 223.4 238 53.4
CANSAT25G0738 Cannabis sativa HOM05D005414 ORTHO05D006844 1.9e-56 223.4 242 54.1
QL02p036925 Quercus lobata HOM05D005414 ORTHO05D006844 3.3e-56 222.6 294 47.3
Sabra02G0050500 Salix brachista HOM05D005414 ORTHO05D006844 6.2e-55 218.4 207 59.4
MELO3C019962.2 Cucumis melo HOM05D005414 ORTHO05D006844 7.6e-53 211.5 240 50.4
ClCG08G007190 Citrullus lanatus HOM05D005414 ORTHO05D006844 2.9e-52 209.5 238 52.9
Potri.005G198600 Populus trichocarpa HOM05D005414 ORTHO05D006844 3.8e-52 209.1 196 57.1
CsaV3_6G004860 Cucumis sativus L. HOM05D005414 ORTHO05D006844 2.7e-50 203.0 248 46.0
CAN.G564.22 Capsicum annuum HOM05D005414 ORTHO05D006844 4.6e-50 202.2 196 52.0
Nitab4.5_0001000g0190 Nicotiana tabacum HOM05D005414 ORTHO05D006844 2.1e-47 193.4 238 47.1
Hund26672 Selenicereus undatus HOM05D005414 ORTHO05D006844 6.2e-47 191.8 178 58.4
Cpa.g.sc26.122 Carica papaya HOM05D005414 ORTHO05D006844 3.4e-45 186.0 158 58.9
HanXRQChr11g0320131 Helianthus annuus HOM05D005414 ORTHO05D006844 9.9e-45 184.5 233 42.9
Lsat_1_v5_gn_4_170780 Lactuca sativa HOM05D005414 ORTHO05D006844 1.3e-44 184.1 245 45.3
Lsat_1_v5_gn_9_42481 Lactuca sativa HOM05D005414 ORTHO05D006844 1.4e-43 180.6 219 50.7
Nitab4.5_0007691g0020 Nicotiana tabacum HOM05D005414 ORTHO05D006844 1.4e-43 180.6 238 47.1
HanXRQChr11g0320151 Helianthus annuus HOM05D005414 ORTHO05D006844 4.2e-43 179.1 245 42.0
Lsat_1_v5_gn_9_42501 Lactuca sativa HOM05D005414 ORTHO05D006844 3.5e-42 176.0 248 42.3
HanXRQChr11g0320121 Helianthus annuus HOM05D005414 ORTHO05D006844 4.6e-42 175.6 232 43.5
ECA232G3911 Erigeron canadensis HOM05D005414 ORTHO05D006844 3.0e-41 172.9 245 40.8
HanXRQChr11g0320141 Helianthus annuus HOM05D005414 ORTHO05D006844 7.1e-35 151.8 243 37.0
Lsat_1_v5_gn_1_83841 Lactuca sativa HOM05D005414 ORTHO05D006844 3.5e-34 149.4 245 39.6
CARHR023110 Cardamine hirsuta HOM05D005414 ORTHO05D006844 6.7e-33 145.2 152 53.3
ATR1120G143 Amborella trichopoda HOM05D005414 ORTHO05D006844 1.5e-32 144.1 109 63.3
HanXRQChr07g0196141 Helianthus annuus HOM05D005414 ORTHO05D006844 2.5e-32 143.3 244 36.5
Lsat_1_v5_gn_2_41300 Lactuca sativa HOM05D005414 ORTHO05D006844 2.8e-31 139.8 199 40.7
HanXRQChr15g0484681 Helianthus annuus HOM05D005414 ORTHO05D006844 1.1e-30 137.9 233 39.1
SEGI_39181 Sequoiadendron giganteum HOM05D005414 ORTHO05D006844 1.1e-30 137.9 107 61.7
Sopen04g028200 Solanum pennellii HOM05D005414 ORTHO05D006844 1.8e-30 137.1 122 51.6
HanXRQChr15g0485041 Helianthus annuus HOM05D005414 ORTHO05D006844 1.7e-28 130.6 216 38.4
EL10Ac1g01628 Beta vulgaris HOM05D005414 ORTHO05D006844 3.2e-27 126.3 244 36.5
HanXRQChr15g0484961 Helianthus annuus HOM05D005414 ORTHO05D006844 5.5e-27 125.6 225 37.8
HPP92_008789 Vanilla planifolia HOM05D005414 ORTHO05D006844 7.1e-27 125.2 105 61.0
AUR62032103 Chenopodium quinoa HOM05D005414 ORTHO05D006844 1.2e-26 124.4 184 44.6
Lsat_1_v5_gn_1_83961 Lactuca sativa HOM05D005414 ORTHO05D006844 1.6e-23 114.0 199 36.7
SMO331G0045 Selaginella moellendorffii HOM05D005414 ORTHO05D006844 2.8e-23 113.2 111 51.4
AagrBONN_evm.TU.Sc2ySwM_228.1176 Anthoceros agrestis HOM05D005414 ORTHO05D006844 6.3e-23 112.1 107 53.3
Pp3c21_15140 Physcomitrium patens HOM05D005414 ORTHO05D006844 6.3e-23 112.1 105 54.3
ECA232G0081 Erigeron canadensis HOM05D005414 ORTHO05D006844 2.6e-21 106.7 149 40.3
TPR.G31416 Trifolium pratense HOM05D005414 ORTHO05D006844 6.5e-20 102.1 106 48.1
CBR_g58808 Chara braunii HOM05D005414 ORTHO05D006844 6.1e-18 95.5 102 48.0
Mapoly0067s0091 Marchantia polymorpha HOM05D005414 ORTHO05D006844 1.4e-17 94.4 107 45.8
Sed0017348 Sechium edule HOM05D005414 ORTHO05D006844 8.8e-17 91.7 108 48.1
AUR62034915 Chenopodium quinoa HOM05D005414 ORTHO05D006844 4.3e-16 89.4 167 38.9
Lsat_1_v5_gn_1_117841 Lactuca sativa HOM05D001315 ORTHO05D004199 1.3e-15 87.8 129 41.1
Lsat_1_v5_gn_1_20800 Lactuca sativa HOM05D000069 ORTHO05D006844 3.7e-15 86.3 122 42.6
HanXRQChr11g0320081 Helianthus annuus HOM05D005414 ORTHO05D006844 4.2e-11 72.8 71 52.1
Lsat_1_v5_gn_9_72760 Lactuca sativa HOM05D005414 ORTHO05D006844 3.6e-10 69.7 218 27.1
ECA233G0443 Erigeron canadensis HOM05D005414 ORTHO05D006844 2.3e-09 67.0 80 41.2
Ah.16g108650 Amaranthus hybridus HOM05D005414 ORTHO05D006844 5.7e-08 62.4 75 48.0
Pp3c18_14820 Physcomitrium patens HOM05D005414 ORTHO05D006844 2.2e-07 60.5 42 73.8
HanXRQChr01g0001821 Helianthus annuus HOM05D005414 ORTHO05D006844 8.2e-07 58.5 104 36.5
CAN.G564.24 Capsicum annuum HOM05D005414 ORTHO05D006844 3.1e-06 56.6 113 32.7


User provided reference genes

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