Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN27G1343 Fragaria x ananassa HOM05D006939 ORTHO05D008616 6.8e-193 677.2 345 100.0
FAN20G0593 Fragaria x ananassa HOM05D006939 ORTHO05D008616 3.5e-189 664.8 345 98.3
FvH4_2g36790 Fragaria vesca HOM05D006939 ORTHO05D008616 5.2e-185 651.0 351 96.3
RcHm_v2.0_Chr6g0304951 Rosa chinensis HOM05D006939 ORTHO05D008616 6.8e-177 624.0 351 90.6
FAN15G1628 Fragaria x ananassa HOM05D006939 ORTHO05D008616 1.5e-171 606.3 351 91.2
Prupe.1G460400 Prunus persica HOM05D006939 ORTHO05D008616 4.2e-142 508.4 355 74.4
MD15G1108100 Malus domestica HOM05D006939 ORTHO05D008616 4.3e-131 471.9 354 71.8
QL12p025112 Quercus lobata HOM05D006939 ORTHO05D008616 7.9e-125 451.1 354 66.9
Atru.chr7.2637 Acer truncatum HOM05D006939 ORTHO05D008616 6.7e-124 448.0 349 66.5
Manes.03G003600 Manihot esculenta HOM05D006939 ORTHO05D008616 9.7e-123 444.1 346 67.3
Ciclev10008814m.g Citrus clementina HOM05D006939 ORTHO05D008616 2.0e-120 436.4 346 67.1
CiPaw.07G213000 Carya illinoinensis HOM05D006939 ORTHO05D008616 7.7e-120 434.5 354 64.7
TAR369G0747 Trochodendron aralioides HOM05D006939 ORTHO05D008616 7.7e-120 434.5 354 63.0
Dinv25196 Davidia involucrata HOM05D006939 ORTHO05D008616 8.5e-119 431.0 336 66.4
Nn8g40552 Nelumbo nucifera HOM05D006939 ORTHO05D008616 8.5e-119 431.0 355 62.8
Glyma.04G075200 Glycine max HOM05D006939 ORTHO05D008616 1.9e-118 429.9 358 63.4
Ca_15668_v3 Cicer arietinum L. HOM05D006939 ORTHO05D008616 1.2e-117 427.2 357 62.5
VMungo1309G0618 Vigna mungo HOM05D006939 ORTHO05D008616 1.2e-117 427.2 355 63.7
CSS0002269 Camellia sinensis var. sinensis HOM05D006939 ORTHO05D008616 6.7e-116 421.4 318 68.6
Lj1g0013260 Lotus japonicus HOM05D006939 ORTHO05D008616 8.8e-116 421.0 354 61.9
CsaV3_2G031410 Cucumis sativus L. HOM05D006939 ORTHO05D008616 1.5e-115 420.2 357 63.3
MBI16_g38081_MAGBIO Magnolia biondii HOM05D006939 ORTHO05D008616 1.5e-115 420.2 350 61.7
MELO3C011191.2 Cucumis melo HOM05D006939 ORTHO05D008616 2.6e-115 419.5 357 63.3
Glyma.06G076400 Glycine max HOM05D006939 ORTHO05D008616 2.6e-115 419.5 354 61.6
CANSAT25G1759 Cannabis sativa HOM05D006939 ORTHO05D008616 1.7e-114 416.8 350 64.3
Gorai.009G068000 Gossypium raimondii HOM05D006939 ORTHO05D008616 2.8e-114 416.0 323 66.6
GSVIVG01035522001 Vitis vinifera HOM05D006939 ORTHO05D008616 3.7e-114 415.6 310 69.0
Gohir.A05G064600 Gossypium hirsutum HOM05D006939 ORTHO05D008616 4.8e-114 415.2 311 68.8
Gohir.D05G067200 Gossypium hirsutum HOM05D006939 ORTHO05D008616 8.2e-114 414.5 311 67.8
Sed0018205 Sechium edule HOM05D006939 ORTHO05D008616 1.1e-113 414.1 356 62.1
TWI63G0558 Tripterygium wilfordii HOM05D006939 ORTHO05D008616 1.1e-113 414.1 342 63.2
Potri.018G005900 Populus trichocarpa HOM05D006939 ORTHO05D008616 6.9e-113 411.4 308 68.8
Thecc.09G006900 Theobroma cacao HOM05D006939 ORTHO05D008616 6.9e-113 411.4 316 66.8
Aqoxy7G02987 Aquilegia oxysepala HOM05D006939 ORTHO05D008616 9.1e-113 411.0 360 61.4
ClCG08G012690 Citrullus lanatus HOM05D006939 ORTHO05D008616 4.5e-112 408.7 351 63.8
Duzib168G0459 Durio zibethinus HOM05D006939 ORTHO05D008616 4.5e-112 408.7 319 65.8
Medtr3g108805 Medicago truncatula HOM05D006939 ORTHO05D008616 7.7e-112 407.9 356 61.8
arahy.Tifrunner.gnm1.ann1.8I4SMW Arachis hypogaea HOM05D006939 ORTHO05D008616 1.7e-111 406.8 353 60.6
Sabra18G0011600 Salix brachista HOM05D006939 ORTHO05D008616 3.8e-111 405.6 312 67.0
Sabra18G0014100 Salix brachista HOM05D006939 ORTHO05D008616 3.8e-111 405.6 312 67.0
arahy.Tifrunner.gnm1.ann1.WZEV1S Arachis hypogaea HOM05D006939 ORTHO05D008616 6.5e-111 404.8 353 60.9
Lj8C13T0 Lonicera japonica HOM05D006939 ORTHO05D008616 1.1e-110 404.1 315 67.6
PGSC0003DMG400001838 Solanum tuberosum HOM05D006939 ORTHO05D008616 1.1e-110 404.1 316 66.5
PSO170G5391 Papaver somniferum HOM05D006939 ORTHO05D008616 7.2e-110 401.4 362 58.8
PSO063G0559 Papaver somniferum HOM05D006939 ORTHO05D008616 2.1e-109 399.8 362 58.6
AUR62009066 Chenopodium quinoa HOM05D006939 ORTHO05D008616 2.7e-109 399.4 316 65.2
Migut.M00074 Erythranthe guttata HOM05D006939 ORTHO05D008616 2.7e-109 399.4 322 63.7
Actinidia06924 Actinidia chinensis HOM05D006939 ORTHO05D008616 6.1e-109 398.3 323 65.6
CAN.G1445.9 Capsicum annuum HOM05D006939 ORTHO05D008616 7.9e-109 397.9 308 66.6
Cc02_g39540 Coffea canephora HOM05D006939 ORTHO05D008616 1.8e-108 396.7 313 66.8
Sc09g0010200 Simmondsia chinensis HOM05D006939 ORTHO05D008616 1.8e-108 396.7 310 66.5
TPR.G12361 Trifolium pratense HOM05D006939 ORTHO05D008616 8.8e-108 394.4 352 60.5
Lalb_Chr08g0243571 Lupinus albus HOM05D006939 ORTHO05D008616 1.1e-107 394.0 346 60.4
Sopen08g026100 Solanum pennellii HOM05D006939 ORTHO05D008616 1.1e-107 394.0 316 66.5
THA.LOC104814976 Tarenaya hassleriana HOM05D006939 ORTHO05D008616 1.1e-107 394.0 310 65.8
SalBow7G0985 Salvia bowleyana HOM05D006939 ORTHO05D008616 2.0e-107 393.3 315 63.8
Solyc08g077520.3 Solanum lycopersicum HOM05D006939 ORTHO05D008616 4.4e-107 392.1 316 66.1
Hund19405 Selenicereus undatus HOM05D006939 ORTHO05D008616 7.4e-107 391.3 344 61.3
Eucgr.C04007 Eucalyptus grandis HOM05D006939 ORTHO05D008616 1.7e-106 390.2 320 62.2
HPP92_017403 Vanilla planifolia HOM05D006939 ORTHO05D008616 2.6e-104 382.9 325 62.2
HanXRQChr12g0379171 Helianthus annuus HOM05D006939 ORTHO05D008616 1.7e-103 380.2 314 63.4
CDE02G0224 Ceratophyllum demersum HOM05D006939 ORTHO05D008616 3.8e-103 379.0 306 63.4
AUR62020602 Chenopodium quinoa HOM05D006939 ORTHO05D008616 4.2e-102 375.6 300 65.0
Cfa013266 Carpinus fangiana HOM05D006939 ORTHO05D008616 7.2e-102 374.8 261 71.3
ECA240G2907 Erigeron canadensis HOM05D006939 ORTHO05D008616 9.4e-102 374.4 313 62.6
PGR044G1028 Punica granatum HOM05D006939 ORTHO05D008616 1.8e-100 370.2 320 59.4
Psat5g025040 Pisum sativum HOM05D006939 ORTHO05D008616 2.0e-99 366.7 280 68.6
Sp6g32750 Schrenkiella parvula HOM05D006939 ORTHO05D008616 3.3e-99 365.9 310 61.6
Carub.0006s0918 Capsella rubella HOM05D006939 ORTHO05D008616 2.2e-98 363.2 311 60.8
Peaxi162Scf00084g00007 Petunia axillaris HOM05D006939 ORTHO05D008616 2.2e-98 363.2 293 65.2
unitig_61.g26486 Utricularia gibba HOM05D006939 ORTHO05D008616 2.2e-98 363.2 307 61.9
CARHR202610 Cardamine hirsuta HOM05D006939 ORTHO05D008616 2.8e-98 362.8 302 61.6
AL6G21250 Arabidopsis lyrata HOM05D006939 ORTHO05D008616 4.8e-98 362.1 312 58.0
MSTRG.14901 Avicennia marina HOM05D006939 ORTHO05D008616 2.4e-97 359.8 317 58.7
C03p05420 Brassica napus HOM05D006939 ORTHO05D008616 5.3e-97 358.6 310 61.6
BcaB01g05506 Brassica carinata HOM05D006939 ORTHO05D008616 4.5e-96 355.5 310 61.3
SGA_v2.0_scaffold73G24476 Striga asiatica HOM05D006939 ORTHO05D008616 4.5e-96 355.5 318 59.7
Aa31LG3G16420 Aethionema arabicum HOM05D006939 ORTHO05D008616 5.9e-96 355.1 321 57.9
BraA03t09811Z Brassica rapa HOM05D006939 ORTHO05D008616 1.3e-95 354.0 310 61.0
A03p04710 Brassica napus HOM05D006939 ORTHO05D008616 1.7e-95 353.6 310 60.6
DCAR_015445 Daucus carota HOM05D006939 ORTHO05D008616 1.7e-95 353.6 319 58.3
Oeu040447.1 Olea europaea HOM05D006939 ORTHO05D008616 2.2e-95 353.2 277 66.1
ATR0580G399 Amborella trichopoda HOM05D006939 ORTHO05D008616 8.5e-95 351.3 353 53.3
BcaB01g06272 Brassica carinata HOM05D006939 ORTHO05D008616 2.5e-94 349.7 302 61.3
CiPaw.08G019500 Carya illinoinensis HOM05D006939 ORTHO05D008616 2.5e-94 349.7 321 58.3
DCAR_026761 Daucus carota HOM05D006939 ORTHO05D008616 1.2e-93 347.4 320 59.1
vmacro04127 Vaccinium macrocarpon HOM05D006939 ORTHO05D008616 4.7e-93 345.5 264 68.6
Rhsim13G0217600 Rhododendron simsii HOM05D006939 ORTHO05D008616 2.0e-91 340.1 418 48.6
SGA_v2.0_scaffold49G18392 Striga asiatica HOM05D002257 ORTHO05D008616 4.4e-91 339.0 314 58.9
Lj8C69T1 Lonicera japonica HOM05D006939 ORTHO05D008616 6.3e-90 335.1 315 59.7
BolC3t13053H Brassica oleracea HOM05D006939 ORTHO05D008616 8.3e-90 334.7 294 61.6
Zm00001eb048210 Zea mays HOM05D006939 ORTHO05D008616 9.1e-89 331.3 330 52.7
EL10Ac2g03752 Beta vulgaris HOM05D006939 ORTHO05D008616 7.7e-88 328.2 317 58.4
Haze_21731 Corylus avellana HOM05D006939 ORTHO05D008616 1.3e-87 327.4 240 70.8
Thhalv10014111m.g Eutrema salsugineum HOM05D006939 ORTHO05D008616 5.0e-87 325.5 316 57.0
Nitab4.5_0006135g0050 Nicotiana tabacum HOM05D006939 ORTHO05D008616 8.5e-87 324.7 282 63.5
EL10Ac5g10928 Beta vulgaris HOM05D006939 ORTHO05D008616 2.6e-83 313.2 266 63.5
AT5G10710 Arabidopsis thaliana HOM05D006939 ORTHO05D008616 2.2e-82 310.1 312 53.5
Nitab4.5_0001255g0030 Nicotiana tabacum HOM05D006939 ORTHO05D008616 4.9e-82 308.9 287 60.3
Lsat_1_v5_gn_5_46220 Lactuca sativa HOM05D006939 ORTHO05D008616 3.3e-78 296.2 307 55.0
Phvul.009G101000 Phaseolus vulgaris HOM05D006939 ORTHO05D008616 3.3e-78 296.2 194 73.7
MD08G1128700 Malus domestica HOM05D006939 ORTHO05D008616 4.9e-50 202.6 208 56.2
SHI21120 Sapria himalayana HOM05D006939 ORTHO05D008616 4.9e-50 202.6 228 52.6
Aqoxy3G02235 Aquilegia oxysepala HOM05D006939 ORTHO05D008616 1.9e-41 174.1 140 60.7
MBI16_g27300_MAGBIO Magnolia biondii HOM05D006939 ORTHO05D008616 1.8e-36 157.5 219 41.1
AagrBONN_evm.TU.Sc2ySwM_344.1051 Anthoceros agrestis HOM05D006939 ORTHO05D008616 1.1e-33 148.3 312 33.3
Mapoly0042s0046 Marchantia polymorpha HOM05D006939 ORTHO05D008616 1.9e-33 147.5 330 32.7
AagrBONN_evm.TU.Sc2ySwM_228.595 Anthoceros agrestis HOM05D006939 ORTHO05D008616 3.0e-31 140.2 337 32.9
Pp3c6_9310 Physcomitrium patens HOM05D006939 ORTHO05D008616 3.9e-31 139.8 343 30.0
SMO119G0385 Selaginella moellendorffii HOM05D006939 ORTHO05D008616 3.3e-30 136.7 295 32.5
Aqoxy1G02501 Aquilegia oxysepala HOM05D006939 ORTHO05D008616 5.3e-28 129.4 238 39.5
BcaB01g06274 Brassica carinata HOM05D006939 ORTHO05D008616 1.3e-26 124.8 131 55.0
Pp3c5_16590 Physcomitrium patens HOM05D006939 ORTHO05D008616 1.6e-24 117.9 314 26.8
CDE05G2180 Ceratophyllum demersum HOM05D006939 ORTHO05D008616 1.1e-22 111.7 138 44.2
Os04g0284100 Oryza sativa ssp. japonica HOM05D006939 ORTHO05D008616 3.7e-21 106.7 77 64.9
COL.COLO4_19037 Corchorus olitorius HOM05D000039 ORTHO05D000870 9.0e-12 75.5 137 41.6


User provided reference genes

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