Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN27G1320 Fragaria x ananassa HOM05D000003 ORTHO05D006737 8.3e-67 256.9 130 100.0
FvH4_2g19503 Fragaria vesca HOM05D000003 ORTHO05D006737 6.1e-54 214.2 128 85.2
FvH4_1g19421 Fragaria vesca HOM05D000003 ORTHO05D006737 1.0e-40 170.2 97 86.6
FAN19G0394 Fragaria x ananassa HOM05D000003 ORTHO05D006737 3.3e-39 165.2 97 84.5
FAN19G1043 Fragaria x ananassa HOM05D000003 ORTHO05D006737 3.3e-39 165.2 97 84.5
FvH4_4g20982 Fragaria vesca HOM05D000003 ORTHO05D006737 2.5e-31 139.0 119 57.1
FvH4_3g20371 Fragaria vesca HOM05D000003 ORTHO05D000004 5.6e-31 137.9 119 57.1
FvH4_3g27973 Fragaria vesca HOM05D000003 ORTHO05D006737 2.3e-29 132.5 118 55.9
FAN15G1410 Fragaria x ananassa HOM05D000003 ORTHO05D006737 8.3e-27 124.0 117 55.6
RcHm_v2.0_Chr5g0065261 Rosa chinensis HOM05D000003 ORTHO05D006737 3.9e-24 115.2 112 49.1
RcHm_v2.0_Chr1g0328181 Rosa chinensis HOM05D000003 ORTHO05D000004 1.5e-23 113.2 112 48.2
RcHm_v2.0_Chr6g0288751 Rosa chinensis HOM05D000003 ORTHO05D006737 1.5e-23 113.2 112 48.2
FvH4_3g32552 Fragaria vesca HOM05D000003 ORTHO05D006737 7.3e-23 110.9 118 48.3
RcHm_v2.0_Chr1g0314431 Rosa chinensis HOM05D000003 ORTHO05D006737 7.3e-23 110.9 100 54.0
RcHm_v2.0_Chr7g0212601 Rosa chinensis HOM05D000003 ORTHO05D006737 9.5e-23 110.5 110 46.4
RcHm_v2.0_Chr3g0486981 Rosa chinensis HOM05D000003 ORTHO05D006737 2.1e-22 109.4 98 52.0
FAN09G3586 Fragaria x ananassa HOM05D004387 ORTHO05D005218 3.6e-22 108.6 101 51.5
FvH4_6g52701 Fragaria vesca HOM05D000003 ORTHO05D006737 4.7e-22 108.2 98 55.1
RcHm_v2.0_Chr5g0072311 Rosa chinensis HOM05D000003 ORTHO05D006737 1.4e-21 106.7 100 49.0
RcHm_v2.0_Chr1g0336051 Rosa chinensis HOM05D000003 ORTHO05D006737 2.4e-21 105.9 100 50.0
FvH4_6g06990 Fragaria vesca HOM05D000003 ORTHO05D006737 4.0e-21 105.1 115 50.4
RcHm_v2.0_Chr1g0344421 Rosa chinensis HOM05D000003 ORTHO05D006737 4.0e-21 105.1 120 45.8
RcHm_v2.0_Chr5g0033371 Rosa chinensis HOM05D000003 ORTHO05D006737 6.8e-21 104.4 93 51.6
RcHm_v2.0_Chr5g0040041 Rosa chinensis HOM05D000003 ORTHO05D006737 1.2e-20 103.6 120 45.0
FAN12G2468 Fragaria x ananassa HOM05D000003 ORTHO05D006737 2.0e-20 102.8 100 51.0
FAN15G2825 Fragaria x ananassa HOM05D000003 ORTHO05D006737 2.0e-20 102.8 98 52.0
FvH4_3g25361 Fragaria vesca HOM05D000003 ORTHO05D006737 3.4e-20 102.1 134 45.5
FAN14G5848 Fragaria x ananassa HOM05D000003 ORTHO05D006737 3.4e-20 102.1 100 51.0
RcHm_v2.0_Chr5g0031961 Rosa chinensis HOM05D000003 ORTHO05D006737 5.8e-20 101.3 98 49.0
FAN12G1814 Fragaria x ananassa HOM05D000003 ORTHO05D006737 1.7e-19 99.8 108 47.2
FAN25G3140 Fragaria x ananassa HOM05D000003 ORTHO05D006737 2.9e-19 99.0 79 59.5
FvH4_5g06193 Fragaria vesca HOM05D000003 ORTHO05D015112 3.8e-19 98.6 121 46.3
FAN12G3592 Fragaria x ananassa HOM05D000003 ORTHO05D006737 1.4e-18 96.7 100 49.0
FvH4_5g31132 Fragaria vesca HOM05D002804 ORTHO05D006737 1.9e-18 96.3 113 43.4
FAN09G3405 Fragaria x ananassa HOM05D003121 ORTHO05D003535 1.9e-18 96.3 71 64.8
RcHm_v2.0_Chr7g0176911 Rosa chinensis HOM05D000003 ORTHO05D006737 1.9e-18 96.3 85 50.6
FAN13G1105 Fragaria x ananassa HOM05D000003 ORTHO05D006737 9.2e-18 94.0 96 46.9
FAN18G0619 Fragaria x ananassa HOM05D000003 ORTHO05D006737 9.2e-18 94.0 96 46.9
FAN02G3749 Fragaria x ananassa HOM05D006625 ORTHO05D008060 2.1e-17 92.8 94 45.7
FvH4_5g33393 Fragaria vesca HOM05D000003 ORTHO05D006737 2.7e-17 92.4 95 46.3
FAN13G3306 Fragaria x ananassa HOM05D000003 ORTHO05D006737 4.6e-17 91.7 118 39.0
FvH4_6g20980 Fragaria vesca HOM05D017784 ORTHO05D006737 6.0e-17 91.3 88 52.3
FvH4_6g08193 Fragaria vesca HOM05D000003 ORTHO05D006737 1.0e-16 90.5 118 39.0
FAN01G2436 Fragaria x ananassa HOM05D000003 ORTHO05D006737 1.3e-16 90.1 82 53.7
FvH4_2g00211 Fragaria vesca HOM05D000003 ORTHO05D006737 1.7e-16 89.7 89 49.4
FvH4_1g25610 Fragaria vesca HOM05D000003 ORTHO05D000004 2.3e-16 89.4 81 53.1
FvH4_6g21171 Fragaria vesca HOM05D000003 ORTHO05D006737 6.6e-16 87.8 118 37.3
RcHm_v2.0_Chr2g0118121 Rosa chinensis HOM05D000003 ORTHO05D006737 8.7e-16 87.4 85 48.2
RcHm_v2.0_Chr4g0397511 Rosa chinensis HOM05D000003 ORTHO05D006737 8.7e-16 87.4 93 48.4
FvH4_5g12241 Fragaria vesca HOM05D000003 ORTHO05D000004 1.1e-15 87.0 115 40.0
FAN20G2266 Fragaria x ananassa HOM05D000003 ORTHO05D006737 1.9e-15 86.3 93 45.2
FvH4_4g24131 Fragaria vesca HOM05D000003 ORTHO05D015112 7.3e-15 84.3 121 39.7
RcHm_v2.0_Chr4g0395671 Rosa chinensis HOM05D000003 ORTHO05D006737 7.3e-15 84.3 80 48.8
FvH4_4g10782 Fragaria vesca HOM05D000003 ORTHO05D006737 1.4e-13 80.1 82 47.6
RcHm_v2.0_Chr7g0198361 Rosa chinensis HOM05D000003 ORTHO05D006737 2.4e-13 79.3 78 44.9
FvH4_6g31921 Fragaria vesca HOM05D000003 ORTHO05D006737 5.3e-13 78.2 73 49.3
RcHm_v2.0_Chr2g0125521 Rosa chinensis HOM05D000003 ORTHO05D006737 5.3e-13 78.2 89 43.8
FAN01G1087 Fragaria x ananassa HOM05D000003 ORTHO05D006737 6.9e-13 77.8 86 44.2
RcHm_v2.0_Chr4g0423161 Rosa chinensis HOM05D000003 ORTHO05D006737 9.0e-13 77.4 71 53.5
FvH4_3g26222 Fragaria vesca HOM05D000003 ORTHO05D006737 1.2e-12 77.0 99 41.4
FAN14G3227 Fragaria x ananassa HOM05D000003 ORTHO05D006737 1.5e-12 76.6 98 36.7
FAN05G0213 Fragaria x ananassa HOM05D001310 ORTHO05D008060 4.4e-12 75.1 61 52.5
FvH4_4g07010 Fragaria vesca HOM05D002778 ORTHO05D003112 1.7e-11 73.2 65 55.4
FvH4_5g30811 Fragaria vesca HOM05D000003 ORTHO05D006737 1.7e-11 73.2 96 40.6
FvH4_6g32941 Fragaria vesca HOM05D000003 ORTHO05D006737 1.7e-11 73.2 88 39.8
FvH4_6g36441 Fragaria vesca HOM05D000003 ORTHO05D019158 2.2e-11 72.8 96 39.6
FAN05G1256 Fragaria x ananassa HOM05D000031 ORTHO05D000030 1.4e-10 70.1 89 40.4
FAN07G0617 Fragaria x ananassa HOM05D000003 ORTHO05D006737 1.4e-10 70.1 86 38.4
FAN20G0635 Fragaria x ananassa HOM05D007879 ORTHO05D000440 1.4e-10 70.1 37 97.3
QL11p056556 Quercus lobata HOM05D000003 ORTHO05D000167 5.4e-10 68.2 99 38.4
FAN01G2975 Fragaria x ananassa HOM05D000003 ORTHO05D006737 1.6e-09 66.6 120 35.0
RcHm_v2.0_Chr3g0474921 Rosa chinensis HOM05D000003 ORTHO05D006737 2.7e-09 65.9 81 45.7
RcHm_v2.0_Chr5g0036711 Rosa chinensis HOM05D000003 ORTHO05D006737 2.7e-09 65.9 95 37.9
FAN18G1324 Fragaria x ananassa HOM05D000003 ORTHO05D006737 4.6e-09 65.1 63 49.2
Dinv32432 Davidia involucrata HOM05D000003 ORTHO05D011454 6.0e-09 64.7 96 36.5
Atru.chr9.2211 Acer truncatum HOM05D000003 ORTHO05D000167 7.8e-09 64.3 94 29.8
Prupe.1G179300 Prunus persica HOM05D000003 ORTHO05D006737 1.0e-08 63.9 95 34.7
Dinv21289 Davidia involucrata HOM05D000079 ORTHO05D000211 3.0e-08 62.4 84 38.1
RcHm_v2.0_Chr7g0239141 Rosa chinensis HOM05D008833 ORTHO05D010662 5.1e-08 61.6 89 38.2
FvH4_6g12311 Fragaria vesca HOM05D000003 ORTHO05D000004 6.6e-08 61.2 89 39.3
FAN11G2445 Fragaria x ananassa HOM05D058534 ORTHO05D046050 6.6e-08 61.2 54 50.0
Prupe.6G141500 Prunus persica HOM05D000003 ORTHO05D000167 6.6e-08 61.2 83 41.0
RcHm_v2.0_Chr7g0203591 Rosa chinensis HOM05D009322 ORTHO05D010713 8.7e-08 60.8 91 31.9
Duzib132G0669 Durio zibethinus HOM05D000003 ORTHO05D000167 1.1e-07 60.5 91 34.1
FAN17G0585 Fragaria x ananassa HOM05D000003 ORTHO05D006737 1.1e-07 60.5 74 39.2
EL10Ac7g16695 Beta vulgaris HOM05D000003 ORTHO05D000006 1.5e-07 60.1 93 34.4
AUR62034216 Chenopodium quinoa HOM05D000003 ORTHO05D000167 1.5e-07 60.1 94 34.0
Dinv08495 Davidia involucrata HOM05D000003 ORTHO05D000167 1.5e-07 60.1 97 34.0
FAN14G2822 Fragaria x ananassa HOM05D000003 ORTHO05D006737 1.5e-07 60.1 65 43.1
Atru.chr8.822 Acer truncatum HOM05D000003 ORTHO05D000167 1.9e-07 59.7 82 35.4
FvH4_6g08250 Fragaria vesca HOM05D000003 ORTHO05D006737 1.9e-07 59.7 65 43.1
FAN18G4526 Fragaria x ananassa HOM05D000003 ORTHO05D006737 1.9e-07 59.7 59 55.9
RcHm_v2.0_Chr6g0254571 Rosa chinensis HOM05D009322 ORTHO05D010713 1.9e-07 59.7 91 31.9
Atru.chr7.396 Acer truncatum HOM05D000003 ORTHO05D000167 2.5e-07 59.3 82 39.0
Ah.04g154180 Amaranthus hybridus HOM05D000003 ORTHO05D006737 2.5e-07 59.3 90 32.2
COL.COLO4_05919 Corchorus olitorius HOM05D009774 ORTHO05D000167 2.5e-07 59.3 96 30.2
FAN05G5833 Fragaria x ananassa HOM05D015403 ORTHO05D010713 2.5e-07 59.3 96 34.4
Atru.chr13.2074 Acer truncatum HOM05D000003 ORTHO05D000167 5.6e-07 58.2 97 34.0
EL10Ac5g12187 Beta vulgaris HOM05D000003 ORTHO05D000006 5.6e-07 58.2 86 33.7
Haze_01518 Corylus avellana HOM05D000003 ORTHO05D044804 7.3e-07 57.8 89 28.1
FAN02G2776 Fragaria x ananassa HOM05D000003 ORTHO05D006737 7.3e-07 57.8 54 55.6
QL07p036969 Quercus lobata HOM05D000003 ORTHO05D000167 7.3e-07 57.8 93 31.2
Ah.12g056700 Amaranthus hybridus HOM05D000003 ORTHO05D006737 9.6e-07 57.4 85 37.6
RcHm_v2.0_Chr4g0413301 Rosa chinensis HOM05D008833 ORTHO05D010662 9.6e-07 57.4 82 40.2
FvH4_6g32473 Fragaria vesca HOM05D000003 ORTHO05D010713 1.3e-06 57.0 97 34.0
QL02p082090 Quercus lobata HOM05D000003 ORTHO05D000167 1.6e-06 56.6 96 36.5
Dinv37210 Davidia involucrata HOM05D000003 ORTHO05D000167 2.1e-06 56.2 96 33.3
FvH4_1g18911 Fragaria vesca HOM05D009322 ORTHO05D010713 2.1e-06 56.2 84 38.1
RcHm_v2.0_Chr5g0012401 Rosa chinensis HOM05D000003 ORTHO05D010713 2.1e-06 56.2 91 31.9
Atru.chr3.843 Acer truncatum HOM05D000003 ORTHO05D000167 2.8e-06 55.8 94 30.9
CANSAT25G0377 Cannabis sativa HOM05D000003 ORTHO05D000167 2.8e-06 55.8 87 33.3
FAN15G2168 Fragaria x ananassa HOM05D000001 ORTHO05D010829 2.8e-06 55.8 34 82.4
RcHm_v2.0_Chr4g0402201 Rosa chinensis HOM05D000003 ORTHO05D000004 2.8e-06 55.8 85 34.1
Haze_01709 Corylus avellana HOM05D004092 ORTHO05D005448 3.6e-06 55.5 71 35.2
Duzib170G1141 Durio zibethinus HOM05D000003 ORTHO05D000167 3.6e-06 55.5 94 31.9
FAN06G1488 Fragaria x ananassa HOM05D003102 ORTHO05D006737 3.6e-06 55.5 36 63.9
RcHm_v2.0_Chr5g0038961 Rosa chinensis HOM05D008833 ORTHO05D000167 3.6e-06 55.5 89 34.8
FAN14G0257 Fragaria x ananassa HOM05D000003 ORTHO05D006737 4.8e-06 55.1 59 45.8
FAN28G2522 Fragaria x ananassa HOM05D015403 ORTHO05D010713 4.8e-06 55.1 96 33.3
RcHm_v2.0_Chr1g0333161 Rosa chinensis HOM05D009322 ORTHO05D010713 4.8e-06 55.1 92 33.7
Atru.chr2.2868 Acer truncatum HOM05D000003 ORTHO05D000004 6.2e-06 54.7 82 37.8
Duzib147G0364 Durio zibethinus HOM05D000003 ORTHO05D000167 6.2e-06 54.7 93 32.3
RcHm_v2.0_Chr5g0038031 Rosa chinensis HOM05D009322 ORTHO05D010713 6.2e-06 54.7 88 35.2
Duzib027G0001 Durio zibethinus HOM05D000003 ORTHO05D000167 8.1e-06 54.3 93 32.3


User provided reference genes

Program Settings