Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN27G1282 Fragaria x ananassa HOM05D005174 ORTHO05D006784 2.9e-216 755.0 395 100.0
FvH4_2g26610 Fragaria vesca HOM05D005174 ORTHO05D006784 3.6e-129 465.7 311 84.9
FAN24G0526 Fragaria x ananassa HOM05D005174 ORTHO05D006784 3.6e-129 465.7 311 84.9
FAN20G1758 Fragaria x ananassa HOM05D005174 ORTHO05D006784 1.1e-117 427.6 311 79.1
RcHm_v2.0_Chr6g0295461 Rosa chinensis HOM05D005174 ORTHO05D006784 7.0e-117 424.9 315 76.5
FAN15G0922 Fragaria x ananassa HOM05D005174 ORTHO05D006784 2.1e-105 386.7 340 70.6
Prupe.1G501000 Prunus persica HOM05D005174 ORTHO05D006784 5.9e-100 368.6 322 66.8
MD15G1352500 Malus domestica HOM05D005174 ORTHO05D006784 1.4e-88 330.9 322 62.7
GSVIVG01008896001 Vitis vinifera HOM05D005174 ORTHO05D006784 1.9e-82 310.5 318 57.9
arahy.Tifrunner.gnm1.ann1.3YB7R6 Arachis hypogaea HOM05D005174 ORTHO05D006784 4.7e-81 305.8 320 57.2
Glyma.06G111200 Glycine max HOM05D005174 ORTHO05D006784 8.0e-81 305.1 317 57.7
QL09p035644 Quercus lobata HOM05D005174 ORTHO05D006784 8.0e-81 305.1 317 57.4
CANSAT25G0921 Cannabis sativa HOM05D005174 ORTHO05D006784 1.4e-80 304.3 321 56.4
Lj1g0014313 Lotus japonicus HOM05D005174 ORTHO05D006784 2.3e-80 303.5 319 57.4
TWI56G0960 Tripterygium wilfordii HOM05D005174 ORTHO05D006784 6.8e-80 302.0 318 55.7
Psat5g120840 Pisum sativum HOM05D005174 ORTHO05D006784 8.9e-80 301.6 320 56.9
Potri.005G175900 Populus trichocarpa HOM05D005174 ORTHO05D006784 3.4e-79 299.7 324 55.9
Medtr3g072620 Medicago truncatula HOM05D005174 ORTHO05D006784 4.4e-79 299.3 324 56.8
Cfa015995 Carpinus fangiana HOM05D005174 ORTHO05D006784 5.8e-79 298.9 317 56.8
TAR381G1686 Trochodendron aralioides HOM05D005174 ORTHO05D006784 9.8e-79 298.1 315 56.8
COL.COLO4_12205 Corchorus olitorius HOM05D005174 ORTHO05D006784 1.7e-78 297.4 317 56.2
Dinv40398 Davidia involucrata HOM05D005174 ORTHO05D006784 2.2e-78 297.0 313 57.2
Lj5g0013947 Lotus japonicus HOM05D005174 ORTHO05D006784 2.2e-78 297.0 320 55.9
Lalb_Chr08g0241531 Lupinus albus HOM05D005174 ORTHO05D006784 3.7e-78 296.2 315 56.8
Thecc.08G122000 Theobroma cacao HOM05D005174 ORTHO05D006784 6.4e-78 295.4 315 56.8
Ca_13578_v3 Cicer arietinum L. HOM05D005174 ORTHO05D006784 8.3e-78 295.0 320 56.2
Phvul.009G123200 Phaseolus vulgaris HOM05D005174 ORTHO05D006784 1.1e-77 294.7 320 55.3
VMungo1309G0682 Vigna mungo HOM05D005174 ORTHO05D006784 1.1e-77 294.7 320 55.6
PGSC0003DMG400017574 Solanum tuberosum HOM05D005174 ORTHO05D006784 1.9e-77 293.9 314 55.1
CSS0047682 Camellia sinensis var. sinensis HOM05D005174 ORTHO05D006784 2.4e-77 293.5 312 55.8
CSS0048949 Camellia sinensis var. sinensis HOM05D005174 ORTHO05D006784 5.4e-77 292.4 312 55.4
Duzib093G0119 Durio zibethinus HOM05D005174 ORTHO05D006784 1.2e-76 291.2 319 56.4
Gorai.005G090400 Gossypium raimondii HOM05D005174 ORTHO05D006784 2.7e-76 290.0 315 56.2
Eucgr.H00450 Eucalyptus grandis HOM05D005174 ORTHO05D006784 1.0e-75 288.1 321 54.2
Sopen06g020560 Solanum pennellii HOM05D005174 ORTHO05D006784 3.0e-75 286.6 314 53.8
ClCG11G015640 Citrullus lanatus HOM05D005174 ORTHO05D006784 6.6e-75 285.4 313 53.0
Sc01g0001320 Simmondsia chinensis HOM05D005174 ORTHO05D006784 6.6e-75 285.4 319 52.7
Solyc06g060420.3 Solanum lycopersicum HOM05D005174 ORTHO05D006784 6.6e-75 285.4 314 54.1
Manes.02G161600 Manihot esculenta HOM05D005174 ORTHO05D006784 1.5e-74 284.3 318 53.8
Duzib116G0013 Durio zibethinus HOM05D005174 ORTHO05D006784 1.9e-74 283.9 330 53.9
TPR.G22992 Trifolium pratense HOM05D005174 ORTHO05D006784 3.3e-74 283.1 359 50.7
CiPaw.05G223800 Carya illinoinensis HOM05D005174 ORTHO05D006784 4.3e-74 282.7 318 55.7
CsaV3_4G028370 Cucumis sativus L. HOM05D005174 ORTHO05D006784 4.3e-74 282.7 310 53.2
arahy.Tifrunner.gnm1.ann1.Z8FB5F Arachis hypogaea HOM05D005174 ORTHO05D006784 7.3e-74 282.0 375 48.8
Aqoxy6G00176 Aquilegia oxysepala HOM05D005174 ORTHO05D006784 2.1e-73 280.4 313 53.0
Sed0012589 Sechium edule HOM05D005174 ORTHO05D006784 4.7e-73 279.3 313 52.1
Lalb_Chr17g0343851 Lupinus albus HOM05D005174 ORTHO05D006784 6.2e-73 278.9 317 53.3
vmacro00818 Vaccinium macrocarpon HOM05D005174 ORTHO05D006784 8.0e-73 278.5 319 53.9
Cpa.g.sc36.39 Carica papaya HOM05D005174 ORTHO05D006784 1.1e-72 278.1 306 56.2
Gorai.009G244400 Gossypium raimondii HOM05D005174 ORTHO05D006784 1.4e-72 277.7 315 54.3
Glyma.14G147200 Glycine max HOM05D005174 ORTHO05D006784 5.2e-72 275.8 314 53.2
Gohir.A05G233700 Gossypium hirsutum HOM05D005174 ORTHO05D006784 5.2e-72 275.8 315 54.0
Hund24749 Selenicereus undatus HOM05D005174 ORTHO05D006784 5.2e-72 275.8 325 49.8
Oeu047941.1 Olea europaea HOM05D005174 ORTHO05D006784 6.8e-72 275.4 315 54.3
PSO782G4297 Papaver somniferum HOM05D005174 ORTHO05D006784 6.8e-72 275.4 317 53.3
PGR044G1014 Punica granatum HOM05D005174 ORTHO05D006784 6.8e-72 275.4 321 51.7
Nn5g28198 Nelumbo nucifera HOM05D005174 ORTHO05D006784 8.9e-72 275.0 365 51.5
Ciclev10001813m.g Citrus clementina HOM05D005174 ORTHO05D006784 1.2e-71 274.6 324 51.5
Gohir.D02G080900 Gossypium hirsutum HOM05D005174 ORTHO05D006784 2.0e-71 273.9 315 54.6
Cc01_g07610 Coffea canephora HOM05D005174 ORTHO05D006784 4.4e-71 272.7 313 53.0
Gohir.D05G236100 Gossypium hirsutum HOM05D005174 ORTHO05D006784 4.4e-71 272.7 315 54.3
Atru.chr13.1416 Acer truncatum HOM05D005174 ORTHO05D006784 7.5e-71 271.9 319 51.1
MSTRG.1457 Avicennia marina HOM05D005174 ORTHO05D006784 1.7e-70 270.8 314 53.8
PSO170G4538 Papaver somniferum HOM05D005174 ORTHO05D006784 1.1e-69 268.1 317 52.4
Sabra05G0132500 Salix brachista HOM05D005174 ORTHO05D006784 1.1e-69 268.1 381 46.7
Nitab4.5_0008211g0030 Nicotiana tabacum HOM05D005174 ORTHO05D006784 5.4e-69 265.8 306 53.3
Migut.C01145 Erythranthe guttata HOM05D005174 ORTHO05D006784 1.6e-68 264.2 326 50.9
Peaxi162Scf00051g00623 Petunia axillaris HOM05D005174 ORTHO05D006784 1.3e-67 261.2 287 55.4
Aa31LG6G9210 Aethionema arabicum HOM05D005174 ORTHO05D006784 3.0e-67 260.0 318 51.6
Eucgr.L02995 Eucalyptus grandis HOM05D005174 ORTHO05D006784 3.9e-67 259.6 314 52.2
THA.LOC104806814 Tarenaya hassleriana HOM05D005174 ORTHO05D006784 5.1e-67 259.2 317 49.8
Sc01g0001280 Simmondsia chinensis HOM05D005174 ORTHO05D006784 1.1e-66 258.1 289 53.3
Psat2g085920 Pisum sativum HOM05D005174 ORTHO05D006784 1.9e-66 257.3 365 46.6
BcaB04g17581 Brassica carinata HOM05D005174 ORTHO05D006784 2.5e-66 256.9 310 52.6
CDE05G2191 Ceratophyllum demersum HOM05D005174 ORTHO05D006784 4.3e-66 256.1 318 50.0
SGA_v2.0_scaffold52G18977 Striga asiatica HOM05D005174 ORTHO05D006784 4.3e-66 256.1 293 53.9
ATR0193G024 Amborella trichopoda HOM05D005174 ORTHO05D006784 1.2e-65 254.6 324 50.0
ECA232G2439 Erigeron canadensis HOM05D005174 ORTHO05D006784 2.8e-65 253.4 316 51.3
AT1G44835 Arabidopsis thaliana HOM05D005174 ORTHO05D006784 4.7e-65 252.7 308 52.9
Carub.0001s3538 Capsella rubella HOM05D005174 ORTHO05D006784 1.4e-64 251.1 312 51.9
AUR62042433 Chenopodium quinoa HOM05D005174 ORTHO05D006784 1.4e-64 251.1 316 48.1
SalBow7G2597 Salvia bowleyana HOM05D005174 ORTHO05D006784 1.4e-64 251.1 357 46.5
Sp1g33700 Schrenkiella parvula HOM05D005174 ORTHO05D006784 5.2e-64 249.2 322 50.6
CARHR036100 Cardamine hirsuta HOM05D005174 ORTHO05D006784 8.9e-64 248.4 311 51.8
AUR62018164 Chenopodium quinoa HOM05D005174 ORTHO05D006784 8.9e-64 248.4 317 48.3
HanXRQChr02g0041151 Helianthus annuus HOM05D005174 ORTHO05D006784 1.2e-63 248.1 311 48.6
Lsat_1_v5_gn_4_135460 Lactuca sativa HOM05D005174 ORTHO05D006784 1.2e-63 248.1 319 50.8
RhsimUnG0094500 Rhododendron simsii HOM05D005174 ORTHO05D006784 2.6e-63 246.9 347 47.8
EL10Ac2g03105 Beta vulgaris HOM05D005174 ORTHO05D006784 1.7e-62 244.2 326 47.2
AL1G52500 Arabidopsis lyrata HOM05D005174 ORTHO05D006784 2.9e-62 243.4 322 50.6
Thhalv10004660m.g Eutrema salsugineum HOM05D005174 ORTHO05D006784 8.3e-62 241.9 316 48.7
BcaC08g42881 Brassica carinata HOM05D005174 ORTHO05D006784 1.1e-61 241.5 326 49.4
CAN.G1396.5 Capsicum annuum HOM05D005174 ORTHO05D006784 1.4e-61 241.1 275 54.9
C06p00970 Brassica napus HOM05D005174 ORTHO05D006784 3.2e-61 240.0 334 47.6
A10p07300 Brassica napus HOM05D005174 ORTHO05D006784 4.1e-61 239.6 312 51.0
BolC6t35233H Brassica oleracea HOM05D005174 ORTHO05D006784 4.1e-61 239.6 329 49.5
BraSC36t46091Z Brassica rapa HOM05D005174 ORTHO05D006784 4.1e-61 239.6 312 51.0
Thhalv10021201m.g Eutrema salsugineum HOM05D005174 ORTHO05D006784 4.1e-61 239.6 306 48.7
A08p06300 Brassica napus HOM05D005174 ORTHO05D006784 7.1e-61 238.8 321 50.5
BraA08t32633Z Brassica rapa HOM05D005174 ORTHO05D006784 1.2e-60 238.0 321 50.2
Nitab4.5_0000633g0140 Nicotiana tabacum HOM05D005174 ORTHO05D006784 1.2e-60 238.0 290 50.7
Actinidia29457 Actinidia chinensis HOM05D005174 ORTHO05D006784 5.1e-59 232.6 316 48.4
Os02g0767700 Oryza sativa ssp. japonica HOM05D005174 ORTHO05D006784 3.3e-58 229.9 298 51.0
BcaC07g37283 Brassica carinata HOM05D005174 ORTHO05D006784 5.6e-58 229.2 314 49.0
C08p07120 Brassica napus HOM05D005174 ORTHO05D006784 5.6e-58 229.2 314 49.0
BolC8t47557H Brassica oleracea HOM05D005174 ORTHO05D006784 5.6e-58 229.2 314 49.0
DCAR_017401 Daucus carota HOM05D005174 ORTHO05D006784 4.7e-57 226.1 222 59.5
Zm00001eb193560 Zea mays HOM05D005174 ORTHO05D006784 6.8e-56 222.2 283 50.5
Ah.10g032020 Amaranthus hybridus HOM05D005174 ORTHO05D006784 3.3e-50 203.4 316 43.7
MELO3C032634.2 Cucumis melo HOM05D005174 ORTHO05D006784 4.3e-50 203.0 306 44.8
MBI03_g33021_MAGBIO Magnolia biondii HOM05D005174 ORTHO05D006784 9.9e-47 191.8 266 48.1
FAN20G0512 Fragaria x ananassa HOM05D005174 ORTHO05D006784 1.4e-45 188.0 244 55.7
Pp3c18_22250 Physcomitrium patens HOM05D005174 ORTHO05D006784 2.1e-41 174.1 313 39.6
Haze_00470 Corylus avellana HOM05D005174 ORTHO05D006784 6.2e-41 172.6 141 64.5
Mapoly0010s0001 Marchantia polymorpha HOM05D005174 ORTHO05D006784 9.9e-39 165.2 314 39.2
Gohir.A02G073700 Gossypium hirsutum HOM05D005174 ORTHO05D006784 2.2e-38 164.1 308 40.9
SEGI_02373 Sequoiadendron giganteum HOM05D005174 ORTHO05D006784 4.2e-37 159.8 276 38.4
Hund16845 Selenicereus undatus HOM05D005174 ORTHO05D006784 1.6e-36 157.9 105 77.1
unitig_82.g26987 Utricularia gibba HOM05D005174 ORTHO05D006784 1.0e-35 155.2 310 37.1
Sabra15G0076900 Salix brachista HOM05D000453 ORTHO05D000387 3.3e-34 150.2 190 52.1
Cre10.g425950 Chlamydomonas reinhardtii HOM05D005174 ORTHO05D006784 5.6e-34 149.4 225 39.6
Haze_00471 Corylus avellana HOM05D005174 ORTHO05D006784 7.9e-28 129.0 159 50.9
FAN24G2292 Fragaria x ananassa HOM05D005174 ORTHO05D006784 1.0e-27 128.6 136 60.3
MD08G1166300 Malus domestica HOM05D005174 ORTHO05D006784 7.4e-26 122.5 83 78.3
Lj7A337T25 Lonicera japonica HOM05D005174 ORTHO05D006784 2.8e-25 120.6 152 50.7
HPP92_001042 Vanilla planifolia HOM05D005174 ORTHO05D006784 5.8e-23 112.8 316 32.9
PRCOL_00005180 Prasinoderma coloniale HOM05D005174 ORTHO05D006784 1.7e-22 111.3 204 35.8
SMO200G0142 Selaginella moellendorffii HOM05D000188 ORTHO05D007139 3.9e-19 100.1 264 34.1
Sabra02G0067100 Salix brachista HOM05D005174 ORTHO05D006784 2.5e-18 97.4 337 29.7
Cfa010764 Carpinus fangiana HOM05D005174 ORTHO05D006784 3.1e-16 90.5 99 55.6
Ca_03754_v3 Cicer arietinum L. HOM05D005174 ORTHO05D006784 4.5e-15 86.7 75 65.3
Potri.002G085700 Populus trichocarpa HOM05D005174 ORTHO05D050453 6.5e-14 82.8 54 74.1
arahy.Tifrunner.gnm1.ann1.032V6W Arachis hypogaea HOM05D005174 ORTHO05D015215 1.9e-13 81.3 46 89.1
arahy.Tifrunner.gnm1.ann1.PAU1NR Arachis hypogaea HOM05D005174 ORTHO05D015215 1.9e-13 81.3 46 89.1
arahy.Tifrunner.gnm1.ann1.RE5YQ2 Arachis hypogaea HOM05D005174 ORTHO05D015215 1.9e-13 81.3 46 89.1
Duzib041G0272 Durio zibethinus HOM05D005174 ORTHO05D015215 1.9e-13 81.3 54 77.8
arahy.Tifrunner.gnm1.ann1.W2W6PZ Arachis hypogaea HOM05D005174 ORTHO05D015215 2.7e-12 77.4 45 86.7
SEGI_30371 Sequoiadendron giganteum HOM05D005174 ORTHO05D050453 1.4e-11 75.1 53 69.8
arahy.Tifrunner.gnm1.ann1.S56SQA Arachis hypogaea HOM05D005174 ORTHO05D015215 2.3e-11 74.3 79 50.6
arahy.Tifrunner.gnm1.ann1.9F26EH Arachis hypogaea HOM05D005174 ORTHO05D015215 1.5e-07 61.6 46 71.7
SGA_v2.0_scaffold24G10473 Striga asiatica HOM05D021410 ORTHO05D401290 2.6e-07 60.8 36 77.8


User provided reference genes

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