Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN27G1261 Fragaria x ananassa HOM05D004940 ORTHO05D007805 0.0e+00 1355.5 631 100.0
FvH4_2g20890 Fragaria vesca HOM05D004940 ORTHO05D007805 0.0e+00 1337.4 631 98.4
RcHm_v2.0_Chr6g0287291 Rosa chinensis HOM05D004940 ORTHO05D007805 0.0e+00 1288.1 636 94.2
FAN20G1599 Fragaria x ananassa HOM05D004940 ORTHO05D007805 0.0e+00 1277.7 740 83.8
FAN15G2608 Fragaria x ananassa HOM05D004940 ORTHO05D007805 0.0e+00 1221.8 668 87.6
FAN24G3024 Fragaria x ananassa HOM05D004940 ORTHO05D007805 0.0e+00 1219.5 668 87.7
MD10G1178900 Malus domestica HOM05D004940 ORTHO05D007805 0.0e+00 1196.0 639 87.0
MD05G1192400 Malus domestica HOM05D004940 ORTHO05D007805 0.0e+00 1172.5 637 85.1
Potri.014G195500 Populus trichocarpa HOM05D004940 ORTHO05D007805 0.0e+00 1142.5 632 82.8
TWI12G0664 Tripterygium wilfordii HOM05D004940 ORTHO05D007805 0.0e+00 1141.7 633 82.1
arahy.Tifrunner.gnm1.ann1.N1VHSE Arachis hypogaea HOM05D004940 ORTHO05D007805 0.0e+00 1140.2 626 80.8
Cpa.g.sc165.41 Carica papaya HOM05D004940 ORTHO05D007805 0.0e+00 1138.3 627 82.5
Sabra14G0144700 Salix brachista HOM05D004940 ORTHO05D007805 0.0e+00 1138.3 638 82.4
GSVIVG01028386001 Vitis vinifera HOM05D004940 ORTHO05D007805 0.0e+00 1138.3 628 82.6
Cc01_g18010 Coffea canephora HOM05D004940 ORTHO05D007805 0.0e+00 1137.9 608 85.2
Medtr7g098010 Medicago truncatula HOM05D004940 ORTHO05D007805 0.0e+00 1131.3 623 81.9
CANSAT01G2138 Cannabis sativa HOM05D004940 ORTHO05D007805 0.0e+00 1130.5 626 82.3
Psat3g055720 Pisum sativum HOM05D004940 ORTHO05D007805 0.0e+00 1130.2 623 81.7
CiPaw.03G268400 Carya illinoinensis HOM05D004940 ORTHO05D007805 0.0e+00 1129.4 622 83.0
Thecc.01G253300 Theobroma cacao HOM05D004940 ORTHO05D007805 0.0e+00 1128.2 624 83.2
Glyma.19G166800 Glycine max HOM05D004940 ORTHO05D007805 0.0e+00 1127.9 619 82.2
Lj1g0003710 Lotus japonicus HOM05D004940 ORTHO05D007805 0.0e+00 1125.5 625 81.6
TPR.G9192 Trifolium pratense HOM05D004940 ORTHO05D007805 0.0e+00 1125.5 623 82.0
TAR362G0048 Trochodendron aralioides HOM05D004940 ORTHO05D007805 0.0e+00 1124.8 627 82.0
arahy.Tifrunner.gnm1.ann1.YK26R7 Arachis hypogaea HOM05D004940 ORTHO05D007805 0.0e+00 1122.1 626 80.0
Lalb_Chr01g0019571 Lupinus albus HOM05D004940 ORTHO05D007805 0.0e+00 1118.6 626 80.2
vmacro02697 Vaccinium macrocarpon HOM05D004940 ORTHO05D007805 0.0e+00 1116.7 637 79.3
Aqoxy5G00176 Aquilegia oxysepala HOM05D004940 ORTHO05D007805 0.0e+00 1115.5 611 82.0
Actinidia37536 Actinidia chinensis HOM05D004940 ORTHO05D007805 0.0e+00 1112.8 655 77.9
Sc24g0003690 Simmondsia chinensis HOM05D004940 ORTHO05D007805 0.0e+00 1112.1 628 80.9
Ciclev10019263m.g Citrus clementina HOM05D004940 ORTHO05D007805 0.0e+00 1110.5 612 82.0
CAN.G1270.3 Capsicum annuum HOM05D004940 ORTHO05D007805 0.0e+00 1107.4 631 79.7
Gorai.004G057300 Gossypium raimondii HOM05D004940 ORTHO05D007805 0.0e+00 1106.3 625 81.3
Gohir.D08G056200 Gossypium hirsutum HOM05D004940 ORTHO05D007805 0.0e+00 1104.7 625 81.1
Sopen09g028520 Solanum pennellii HOM05D004940 ORTHO05D007805 0.0e+00 1104.4 618 80.9
CsaV3_3G028180 Cucumis sativus L. HOM05D004940 ORTHO05D007805 0.0e+00 1103.2 628 79.9
Phvul.001G163200 Phaseolus vulgaris HOM05D004940 ORTHO05D007805 0.0e+00 1101.3 625 80.6
Atru.chr5.1786 Acer truncatum HOM05D004940 ORTHO05D007805 0.0e+00 1100.9 611 81.2
VMungo1383G2176 Vigna mungo HOM05D004940 ORTHO05D007805 0.0e+00 1099.3 604 82.1
Migut.D00459 Erythranthe guttata HOM05D004940 ORTHO05D007805 0.0e+00 1097.4 613 81.1
PGR031G0691 Punica granatum HOM05D004940 ORTHO05D007805 0.0e+00 1096.6 601 82.5
Manes.12G035200 Manihot esculenta HOM05D004940 ORTHO05D007805 0.0e+00 1095.5 605 82.6
Dinv16378 Davidia involucrata HOM05D004940 ORTHO05D007805 0.0e+00 1094.0 637 79.3
Nn1g02898 Nelumbo nucifera HOM05D004940 ORTHO05D007805 0.0e+00 1092.8 627 80.2
MSTRG.18341 Avicennia marina HOM05D004940 ORTHO05D007805 0.0e+00 1092.0 629 79.7
Eucgr.A01366 Eucalyptus grandis HOM05D004940 ORTHO05D007805 0.0e+00 1087.4 601 80.9
Lsat_1_v5_gn_8_92240 Lactuca sativa HOM05D004940 ORTHO05D007805 0.0e+00 1087.0 610 80.5
Ca_08723_v3 Cicer arietinum L. HOM05D004940 ORTHO05D007805 0.0e+00 1085.5 597 82.1
Sed0008536 Sechium edule HOM05D004940 ORTHO05D007805 0.0e+00 1085.5 628 78.8
THA.LOC104826048 Tarenaya hassleriana HOM05D004940 ORTHO05D007805 0.0e+00 1083.6 631 76.9
Migut.N02221 Erythranthe guttata HOM05D004940 ORTHO05D007805 0.0e+00 1082.0 613 80.1
SalBow4G0784 Salvia bowleyana HOM05D004940 ORTHO05D007805 0.0e+00 1080.5 608 79.9
A09p68080 Brassica napus HOM05D004940 ORTHO05D007805 0.0e+00 1078.9 629 76.8
BraA09t42143Z Brassica rapa HOM05D004940 ORTHO05D007805 0.0e+00 1077.4 629 76.6
BcaC07g42217 Brassica carinata HOM05D004940 ORTHO05D007805 0.0e+00 1077.0 609 78.5
Glyma.03G165500 Glycine max HOM05D004940 ORTHO05D007805 0.0e+00 1077.0 597 81.6
Sp1g02850 Schrenkiella parvula HOM05D004940 ORTHO05D007805 0.0e+00 1076.6 626 77.0
ECA236G4817 Erigeron canadensis HOM05D004940 ORTHO05D007805 0.0e+00 1075.8 611 79.2
C08p52520 Brassica napus HOM05D004940 ORTHO05D007805 0.0e+00 1075.5 629 76.6
BolC8t52779H Brassica oleracea HOM05D004940 ORTHO05D007805 0.0e+00 1075.5 629 76.6
BolC5t29011H Brassica oleracea HOM05D004940 ORTHO05D007805 4.3e-312 1074.7 611 78.7
BraA10t42520Z Brassica rapa HOM05D004940 ORTHO05D007805 4.3e-312 1074.3 611 78.6
PSO764G0099 Papaver somniferum HOM05D004940 ORTHO05D007805 4.3e-312 1073.5 616 79.2
EL10Ac7g17647 Beta vulgaris HOM05D004940 ORTHO05D007805 1.1e-310 1069.3 625 77.8
AT1G04010 Arabidopsis thaliana HOM05D004940 ORTHO05D007805 1.9e-310 1068.5 609 78.7
Carub.0001s0317 Capsella rubella HOM05D004940 ORTHO05D007805 1.9e-310 1068.5 609 78.8
Thhalv10007051m.g Eutrema salsugineum HOM05D004940 ORTHO05D007805 1.9e-310 1068.5 627 77.4
Duzib133G0552 Durio zibethinus HOM05D004940 ORTHO05D007805 4.3e-310 1067.4 596 82.0
HanXRQChr04g0111301 Helianthus annuus HOM05D004940 ORTHO05D007805 4.3e-310 1067.4 632 77.1
CARHR003360 Cardamine hirsuta HOM05D004940 ORTHO05D007805 1.2e-309 1065.8 627 77.4
C05p02330 Brassica napus HOM05D004940 ORTHO05D007805 3.6e-309 1064.3 638 75.4
QL09p040550 Quercus lobata HOM05D004940 ORTHO05D007805 1.1e-308 1062.8 773 66.5
Aa31LG1G20810 Aethionema arabicum HOM05D004940 ORTHO05D007805 6.8e-308 1060.1 623 76.9
A10p02520 Brassica napus HOM05D004940 ORTHO05D007805 8.9e-308 1059.7 638 75.2
BcaC05g24475 Brassica carinata HOM05D004940 ORTHO05D007805 2.6e-307 1058.1 595 79.2
Haze_24676 Corylus avellana HOM05D004940 ORTHO05D007805 4.4e-307 1057.4 684 73.5
MBI07_g18994_MAGBIO Magnolia biondii HOM05D004940 ORTHO05D007805 4.6e-304 1047.3 610 78.9
Rhsim13G0038600 Rhododendron simsii HOM05D004940 ORTHO05D007805 2.3e-300 1035.0 829 60.8
Zm00001eb258680 Zea mays HOM05D004940 ORTHO05D007805 7.5e-299 1030.0 604 75.8
Prupe.8G218700 Prunus persica HOM05D004940 ORTHO05D007805 6.4e-298 1026.9 535 89.2
DCAR_000927 Daucus carota HOM05D004940 ORTHO05D007805 8.6e-295 1016.5 631 73.2
ClCG07G001250 Citrullus lanatus HOM05D004940 ORTHO05D007805 3.6e-293 1011.1 633 74.7
CSS0021031 Camellia sinensis var. sinensis HOM05D004940 ORTHO05D007805 1.4e-292 1009.2 636 73.3
TWI75G1829 Tripterygium wilfordii HOM05D004940 ORTHO05D007805 1.9e-289 998.8 556 81.8
Solyc09g072710.4 Solanum lycopersicum HOM05D004940 ORTHO05D007805 1.5e-286 989.2 618 74.1
ATR0736G200 Amborella trichopoda HOM05D004940 ORTHO05D007805 3.1e-284 981.5 572 78.3
SGA_v2.0_scaffold1G00640 Striga asiatica HOM05D004940 ORTHO05D007805 1.6e-277 959.1 563 78.0
COL.COLO4_36581 Corchorus olitorius HOM05D004940 ORTHO05D007805 1.5e-275 952.6 533 82.4
Manes.13G037500 Manihot esculenta HOM05D004940 ORTHO05D007805 2.0e-275 952.2 577 76.3
AL1G13620 Arabidopsis lyrata HOM05D004940 ORTHO05D007805 9.3e-273 943.3 549 77.0
Gohir.A08G045700 Gossypium hirsutum HOM05D004940 ORTHO05D007805 6.2e-269 930.6 534 81.1
Peaxi162Scf00415g00416 Petunia axillaris HOM05D004940 ORTHO05D007805 2.9e-266 921.8 560 76.1
Hund05470 Selenicereus undatus HOM05D004940 ORTHO05D007805 1.1e-265 919.8 584 73.6
Lj1C71G15 Lonicera japonica HOM05D004940 ORTHO05D007805 3.7e-261 904.8 524 78.2
Oeu028892.3 Olea europaea HOM05D004940 ORTHO05D007805 8.2e-261 903.7 571 73.2
AUR62008763 Chenopodium quinoa HOM05D004940 ORTHO05D007805 5.3e-260 901.0 611 69.4
Nitab4.5_0002389g0100 Nicotiana tabacum HOM05D004940 ORTHO05D007805 1.9e-257 892.5 601 70.4
AUR62025474 Chenopodium quinoa HOM05D004940 ORTHO05D007805 3.2e-257 891.7 640 67.2
Mapoly0023s0070 Marchantia polymorpha HOM05D004940 ORTHO05D007805 2.5e-249 865.5 635 63.6
AagrBONN_evm.TU.Sc2ySwM_344.1925 Anthoceros agrestis HOM05D004940 ORTHO05D007805 9.1e-244 847.0 604 63.4
Nitab4.5_0003295g0190 Nicotiana tabacum HOM05D004940 ORTHO05D007805 1.4e-241 839.7 601 66.7
SMO137G0189 Selaginella moellendorffii HOM05D004940 ORTHO05D007805 2.0e-235 819.3 621 61.8
SMO137G0113 Selaginella moellendorffii HOM05D004940 ORTHO05D007805 4.8e-229 798.1 624 59.5
DCAR_018506 Daucus carota HOM05D004940 ORTHO05D007805 1.2e-224 783.5 491 72.7
MELO3C012862.2 Cucumis melo HOM05D004940 ORTHO05D007805 1.3e-213 746.9 444 78.2
Pp3c16_20320 Physcomitrium patens HOM05D004940 ORTHO05D007805 4.8e-213 745.0 559 61.5
HPP92_012807 Vanilla planifolia HOM05D004940 ORTHO05D007805 1.1e-196 690.6 410 75.6
CDE01G0548 Ceratophyllum demersum HOM05D004940 ORTHO05D007805 1.3e-186 657.1 460 67.6
Duzib138G0347 Durio zibethinus HOM05D004940 ORTHO05D007805 3.1e-183 646.0 381 77.7
Atru.chr5.1796 Acer truncatum HOM05D004940 ORTHO05D007805 2.7e-179 632.9 356 80.9
SHI09716 Sapria himalayana HOM05D004940 ORTHO05D000023 2.5e-177 626.3 434 69.8
PSO832G3423 Papaver somniferum HOM05D004940 ORTHO05D007805 2.1e-131 473.8 246 85.0
Lj1A78G31 Lonicera japonica HOM05D004940 ORTHO05D007805 2.0e-126 457.2 469 51.6
PSO832G4005 Papaver somniferum HOM05D004940 ORTHO05D007805 1.5e-118 431.0 244 82.8
Atru.chr5.1783 Acer truncatum HOM05D004940 ORTHO05D007805 1.9e-92 344.4 202 77.7
SEGI_08888 Sequoiadendron giganteum HOM05D004940 ORTHO05D007805 3.3e-84 317.0 188 73.9
PGSC0003DMG401024284 Solanum tuberosum HOM05D004940 ORTHO05D007805 2.0e-78 297.7 161 84.5
SalBow5G2300 Salvia bowleyana HOM05D004940 ORTHO05D007805 1.3e-72 278.5 178 72.5
HPP92_012808 Vanilla planifolia HOM05D004940 ORTHO05D007805 2.7e-62 244.2 122 89.3
Lj1C79T2 Lonicera japonica HOM05D004940 ORTHO05D007805 4.7e-59 233.4 130 79.2
SMO181G0022 Selaginella moellendorffii HOM05D004940 ORTHO05D037547 1.0e-53 215.7 340 38.2
Os02g0814100 Oryza sativa ssp. japonica HOM05D004940 ORTHO05D007805 1.3e-48 198.7 155 60.0
SEGI_20278 Sequoiadendron giganteum HOM05D004940 ORTHO05D007805 6.4e-48 196.4 160 54.4
Lsat_1_v5_gn_2_111960 Lactuca sativa HOM05D004940 ORTHO05D007805 5.6e-44 183.3 105 79.0
SHI09711 Sapria himalayana HOM05D004940 ORTHO05D018819 3.4e-41 174.1 121 65.3
Zm00001eb037190 Zea mays HOM05D004940 ORTHO05D007805 4.5e-41 173.7 83 91.6
SEGI_40684 Sequoiadendron giganteum HOM05D004940 ORTHO05D007805 3.1e-34 151.0 103 71.8
CSS0009798 Camellia sinensis var. sinensis HOM05D004940 ORTHO05D022117 4.9e-32 143.7 87 73.6
CSS0004187 Camellia sinensis var. sinensis HOM05D004940 ORTHO05D022117 3.9e-29 134.0 87 71.3
CSS0032793 Camellia sinensis var. sinensis HOM05D004940 ORTHO05D022117 3.9e-29 134.0 87 71.3
Lj1C79G2 Lonicera japonica HOM05D004940 ORTHO05D003385 2.1e-27 128.3 72 80.6
MCO05G688 Micromonas commoda HOM05D001762 ORTHO05D001774 6.3e-27 126.7 211 35.1
CSS0034361 Camellia sinensis var. sinensis HOM05D004940 ORTHO05D018819 5.8e-25 120.2 149 46.3
SEGI_20843 Sequoiadendron giganteum HOM05D004940 ORTHO05D007805 2.7e-22 111.3 82 67.1
VMungo0251G2796 Vigna mungo HOM05D004940 ORTHO05D007805 2.7e-22 111.3 51 92.2
Cfa024946 Carpinus fangiana HOM05D001762 ORTHO05D001774 2.3e-21 108.2 415 23.9
Solyc03g121960.3 Solanum lycopersicum HOM05D001762 ORTHO05D001774 3.0e-21 107.8 499 22.4
CAN.G862.26 Capsicum annuum HOM05D001762 ORTHO05D001774 5.1e-21 107.1 503 23.3
Nitab4.5_0002879g0120 Nicotiana tabacum HOM05D001762 ORTHO05D001774 1.1e-20 105.9 504 22.2
PGSC0003DMG400002483 Solanum tuberosum HOM05D001762 ORTHO05D001774 1.1e-20 105.9 499 22.4
Lj3g0011590 Lotus japonicus HOM05D001762 ORTHO05D001774 1.5e-20 105.5 505 24.2
Sopen03g040780 Solanum pennellii HOM05D001762 ORTHO05D001774 2.5e-20 104.8 499 22.2
Cre02.g106400 Chlamydomonas reinhardtii HOM05D001762 ORTHO05D001774 3.3e-20 104.4 225 28.9
SMO181G0033 Selaginella moellendorffii HOM05D004940 ORTHO05D037547 7.4e-20 103.2 140 44.3
Cpa.g.sc1971.1 Carica papaya HOM05D001762 ORTHO05D001774 9.7e-20 102.8 508 24.0
Lj1C79T15 Lonicera japonica HOM05D004940 ORTHO05D048414 9.7e-20 102.8 52 86.5
SGA_v2.0_scaffold27G11590 Striga asiatica HOM05D001762 ORTHO05D001774 1.5e-17 95.5 495 22.2
CSS0033490 Camellia sinensis var. sinensis HOM05D004940 ORTHO05D018819 4.5e-17 94.0 78 57.7
Phvul.008G143913 Phaseolus vulgaris HOM05D004940 ORTHO05D022117 5.9e-17 93.6 79 58.2
PRCOL_00006657 Prasinoderma coloniale HOM05D001762 ORTHO05D001774 1.0e-16 92.8 208 26.0
CSS0008401 Camellia sinensis var. sinensis HOM05D004940 ORTHO05D018819 1.3e-16 92.4 56 71.4
CSS0049470 Camellia sinensis var. sinensis HOM05D004940 ORTHO05D018819 1.3e-16 92.4 56 71.4
CSS0050068 Camellia sinensis var. sinensis HOM05D004940 ORTHO05D022117 1.7e-16 92.0 79 57.0
CSS0026527 Camellia sinensis var. sinensis HOM05D004940 ORTHO05D018819 8.5e-16 89.7 78 55.1
SEGI_00315 Sequoiadendron giganteum HOM05D004940 ORTHO05D048414 9.4e-15 86.3 51 70.6
CSS0024627 Camellia sinensis var. sinensis HOM05D004940 ORTHO05D018819 3.0e-13 81.3 73 56.2
CSS0048666 Camellia sinensis var. sinensis HOM05D004940 ORTHO05D018819 3.0e-13 81.3 73 56.2
MBI13_g29642_MAGBIO Magnolia biondii HOM05D004940 ORTHO05D001085 4.2e-07 60.8 34 67.6


User provided reference genes

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