Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN27G1246 Fragaria x ananassa HOM05D004142 ORTHO05D005411 5.9e-65 250.8 130 100.0
FvH4_2g16780 Fragaria vesca HOM05D004142 ORTHO05D005411 1.8e-61 239.2 134 94.8
FAN15G2670 Fragaria x ananassa HOM05D004142 ORTHO05D005411 1.6e-57 226.1 124 96.0
FAN24G0393 Fragaria x ananassa HOM05D004142 ORTHO05D005411 3.5e-57 224.9 124 95.2
RcHm_v2.0_Chr6g0280901 Rosa chinensis HOM05D004142 ORTHO05D005411 2.8e-51 205.3 124 88.7
MD10G1141700 Malus domestica HOM05D004142 ORTHO05D005411 4.6e-41 171.4 124 75.0
Prupe.8G180000 Prunus persica HOM05D004142 ORTHO05D005411 6.0e-41 171.0 124 75.0
CANSAT25G0210 Cannabis sativa HOM05D004142 ORTHO05D005411 3.2e-34 148.7 124 69.4
MD11G1014400 Malus domestica HOM05D004142 ORTHO05D005411 3.9e-32 141.7 105 72.4
Cfa005371 Carpinus fangiana HOM05D004142 ORTHO05D005411 5.1e-32 141.4 124 67.7
Sopen10g027050 Solanum pennellii HOM05D004142 ORTHO05D005411 1.9e-31 139.4 124 63.7
MELO3C013248.2 Cucumis melo HOM05D004142 ORTHO05D005411 4.3e-31 138.3 145 59.3
Solyc10g074560.2 Solanum lycopersicum HOM05D004142 ORTHO05D005411 4.3e-31 138.3 124 63.7
Sed0023655 Sechium edule HOM05D004142 ORTHO05D005411 5.6e-31 137.9 145 59.3
Atru.chr3.3247 Acer truncatum HOM05D004142 ORTHO05D005411 1.6e-30 136.3 124 64.5
arahy.Tifrunner.gnm1.ann1.52DH7S Arachis hypogaea HOM05D004142 ORTHO05D005411 1.6e-30 136.3 127 61.4
Peaxi162Scf01986g00004 Petunia axillaris HOM05D004142 ORTHO05D005411 2.8e-30 135.6 124 62.9
CAN.G397.37 Capsicum annuum HOM05D004142 ORTHO05D005411 3.6e-30 135.2 124 62.1
Potri.009G168100 Populus trichocarpa HOM05D004142 ORTHO05D005411 3.6e-30 135.2 127 64.6
EL10Ac9g21530 Beta vulgaris HOM05D004142 ORTHO05D005411 1.8e-29 132.9 126 61.9
Nitab4.5_0001700g0140 Nicotiana tabacum HOM05D004142 ORTHO05D005411 2.3e-29 132.5 124 62.9
Duzib052G0377 Durio zibethinus HOM05D004142 ORTHO05D005411 3.1e-29 132.1 124 63.7
CiPaw.06G115400 Carya illinoinensis HOM05D004142 ORTHO05D005411 5.2e-29 131.3 124 63.7
ClCG02G003400 Citrullus lanatus HOM05D004142 ORTHO05D005411 5.2e-29 131.3 145 57.9
Haze_02000 Corylus avellana HOM05D004142 ORTHO05D005411 5.2e-29 131.3 152 56.6
arahy.Tifrunner.gnm1.ann1.FRA838 Arachis hypogaea HOM05D004142 ORTHO05D005411 6.8e-29 131.0 124 60.5
CSS0034003 Camellia sinensis var. sinensis HOM05D004142 ORTHO05D005411 6.8e-29 131.0 128 63.3
Nn5g31006 Nelumbo nucifera HOM05D004142 ORTHO05D005411 6.8e-29 131.0 124 60.5
Nitab4.5_0005657g0020 Nicotiana tabacum HOM05D004142 ORTHO05D005411 6.8e-29 131.0 124 62.9
Ah.05g178840 Amaranthus hybridus HOM05D004142 ORTHO05D005411 8.9e-29 130.6 128 61.7
Aqoxy6G01597 Aquilegia oxysepala HOM05D004142 ORTHO05D005411 8.9e-29 130.6 125 62.4
CSS0014725 Camellia sinensis var. sinensis HOM05D004142 ORTHO05D005411 8.9e-29 130.6 128 63.3
CAN.G765.24 Capsicum annuum HOM05D004142 ORTHO05D005411 8.9e-29 130.6 124 60.5
CsaV3_7G001920 Cucumis sativus L. HOM05D004142 ORTHO05D005411 8.9e-29 130.6 145 57.2
Dinv14174 Davidia involucrata HOM05D004142 ORTHO05D005411 8.9e-29 130.6 124 62.9
Lj5C171T17 Lonicera japonica HOM05D004142 ORTHO05D005411 1.2e-28 130.2 124 59.7
Rhsim11G0198100 Rhododendron simsii HOM05D004142 ORTHO05D005411 1.2e-28 130.2 124 62.1
Lalb_Chr04g0251341 Lupinus albus HOM05D004142 ORTHO05D005411 1.5e-28 129.8 129 61.2
Thecc.02G146100 Theobroma cacao HOM05D004142 ORTHO05D005411 1.5e-28 129.8 124 62.9
TAR633G0693 Trochodendron aralioides HOM05D004142 ORTHO05D005411 1.5e-28 129.8 126 61.9
Ciclev10028022m.g Citrus clementina HOM05D004142 ORTHO05D005411 2.0e-28 129.4 124 62.1
Phvul.008G235900 Phaseolus vulgaris HOM05D004142 ORTHO05D005411 2.0e-28 129.4 126 59.5
VMungo0647G1269 Vigna mungo HOM05D004142 ORTHO05D005411 2.0e-28 129.4 126 59.5
CSS0002990 Camellia sinensis var. sinensis HOM05D004142 ORTHO05D005411 2.6e-28 129.0 128 62.5
DCAR_005486 Daucus carota HOM05D004142 ORTHO05D005411 3.4e-28 128.6 131 59.5
CSS0035317 Camellia sinensis var. sinensis HOM05D004142 ORTHO05D005411 4.4e-28 128.3 126 61.9
QL11p056391 Quercus lobata HOM05D004142 ORTHO05D005411 4.4e-28 128.3 124 64.5
TWI75G0433 Tripterygium wilfordii HOM05D004142 ORTHO05D005411 4.4e-28 128.3 124 60.5
arahy.Tifrunner.gnm1.ann1.0H97XI Arachis hypogaea HOM05D004142 ORTHO05D005411 5.8e-28 127.9 124 59.7
Medtr5g078780 Medicago truncatula HOM05D004142 ORTHO05D005411 9.9e-28 127.1 126 58.7
SalBow5G1400 Salvia bowleyana HOM05D004142 ORTHO05D005411 9.9e-28 127.1 124 62.9
SalBow5G4664 Salvia bowleyana HOM05D004142 ORTHO05D005411 9.9e-28 127.1 124 62.9
Glyma.14G215500 Glycine max HOM05D004142 ORTHO05D005411 1.7e-27 126.3 126 59.5
Actinidia20577 Actinidia chinensis HOM05D004142 ORTHO05D005411 2.2e-27 125.9 124 58.9
Psat2g043640 Pisum sativum HOM05D004142 ORTHO05D005411 2.2e-27 125.9 124 58.9
Hund06363 Selenicereus undatus HOM05D004142 ORTHO05D005411 2.9e-27 125.6 124 61.3
Atru.chr5.3556 Acer truncatum HOM05D004142 ORTHO05D005411 3.7e-27 125.2 124 60.5
ATR0807G091 Amborella trichopoda HOM05D004142 ORTHO05D005411 4.9e-27 124.8 124 59.7
Gohir.D13G057300 Gossypium hirsutum HOM05D004142 ORTHO05D005411 4.9e-27 124.8 125 60.0
Gorai.013G064000 Gossypium raimondii HOM05D004142 ORTHO05D005411 4.9e-27 124.8 125 60.0
Glyma.02G245400 Glycine max HOM05D004142 ORTHO05D005411 8.3e-27 124.0 125 60.8
Cc09_g10830 Coffea canephora HOM05D004142 ORTHO05D005411 1.1e-26 123.6 124 63.7
Gohir.A13G065000 Gossypium hirsutum HOM05D004142 ORTHO05D005411 1.1e-26 123.6 124 58.1
Manes.04G066800 Manihot esculenta HOM05D004142 ORTHO05D005411 1.9e-26 122.9 124 58.1
SGA_v2.0_scaffold98G29302 Striga asiatica HOM05D004142 ORTHO05D005411 2.4e-26 122.5 125 58.4
AUR62010174 Chenopodium quinoa HOM05D004142 ORTHO05D005411 3.2e-26 122.1 120 61.7
Actinidia17993 Actinidia chinensis HOM05D004142 ORTHO05D005411 7.1e-26 120.9 124 57.3
vmacro02340 Vaccinium macrocarpon HOM05D004142 ORTHO05D005411 7.1e-26 120.9 126 58.7
Lsat_1_v5_gn_5_183861 Lactuca sativa HOM05D004142 ORTHO05D005411 9.2e-26 120.6 124 56.5
ECA233G5375 Erigeron canadensis HOM05D004142 ORTHO05D005411 2.7e-25 119.0 124 56.5
THA.LOC104819692 Tarenaya hassleriana HOM05D004142 ORTHO05D005411 2.7e-25 119.0 124 54.0
TAR381G0855 Trochodendron aralioides HOM05D004142 ORTHO05D005411 2.7e-25 119.0 128 57.0
CDE05G3311 Ceratophyllum demersum HOM05D004142 ORTHO05D005411 6.0e-25 117.9 126 56.3
PSO541G0415 Papaver somniferum HOM05D004142 ORTHO05D005411 7.8e-25 117.5 126 56.3
PSO675G0945 Papaver somniferum HOM05D004142 ORTHO05D005411 1.3e-24 116.7 126 56.3
HanXRQChr09g0239911 Helianthus annuus HOM05D004142 ORTHO05D005411 1.7e-24 116.3 124 56.5
MSTRG.27614 Avicennia marina HOM05D004142 ORTHO05D005411 2.3e-24 115.9 125 55.2
TPR.G8874 Trifolium pratense HOM05D004142 ORTHO05D005411 2.3e-24 115.9 124 54.8
PGR042G3440 Punica granatum HOM05D004142 ORTHO05D005411 3.0e-24 115.5 127 57.5
HanXRQChr16g0515111 Helianthus annuus HOM05D004142 ORTHO05D005411 6.6e-24 114.4 144 51.4
TWI31G1182 Tripterygium wilfordii HOM05D004142 ORTHO05D005411 6.6e-24 114.4 142 51.4
Eucgr.G01885 Eucalyptus grandis HOM05D004142 ORTHO05D005411 8.6e-24 114.0 125 56.0
LjContig00141g0017492 Lotus japonicus HOM05D004142 ORTHO05D005411 8.6e-24 114.0 129 54.3
AagrBONN_evm.TU.Sc2ySwM_228.5327 Anthoceros agrestis HOM05D004142 ORTHO05D005411 2.5e-23 112.5 126 52.4
Oeu037461.1 Olea europaea HOM05D004142 ORTHO05D005411 2.5e-23 112.5 71 80.3
Sabra09G0130600 Salix brachista HOM05D004142 ORTHO05D005852 7.3e-23 110.9 126 57.1
Carub.0003s3119 Capsella rubella HOM05D004142 ORTHO05D005411 1.2e-22 110.2 124 54.8
Thhalv10022610m.g Eutrema salsugineum HOM05D004142 ORTHO05D005411 1.6e-22 109.8 124 52.4
Aa31LG8G14620 Aethionema arabicum HOM05D004142 ORTHO05D005411 2.1e-22 109.4 124 54.0
Sc08g0002210 Simmondsia chinensis HOM05D004142 ORTHO05D005411 2.8e-22 109.0 125 54.4
AL3G50110 Arabidopsis lyrata HOM05D004142 ORTHO05D005411 3.6e-22 108.6 124 54.0
CARHR293590 Cardamine hirsuta HOM05D004142 ORTHO05D005411 4.7e-22 108.2 125 51.2
Os04g0585300 Oryza sativa ssp. japonica HOM05D004142 ORTHO05D005411 4.7e-22 108.2 124 55.6
Zm00001eb428130 Zea mays HOM05D004142 ORTHO05D005411 4.7e-22 108.2 124 56.5
AT2G17250 Arabidopsis thaliana HOM05D004142 ORTHO05D005411 6.2e-22 107.8 124 50.8
Migut.B01359 Erythranthe guttata HOM05D004142 ORTHO05D005411 8.1e-22 107.5 124 54.0
A09p11250 Brassica napus HOM05D004142 ORTHO05D005411 1.1e-21 107.1 126 50.8
BraA07t28174Z Brassica rapa HOM05D004142 ORTHO05D005411 1.4e-21 106.7 124 53.2
SHI03795 Sapria himalayana HOM05D004142 ORTHO05D005411 2.4e-21 105.9 122 56.6
A07p03800 Brassica napus HOM05D004142 ORTHO05D005411 3.1e-21 105.5 124 52.4
MD05G1138800 Malus domestica HOM05D004142 ORTHO05D005411 3.1e-21 105.5 110 58.2
BcaC04g22983 Brassica carinata HOM05D004142 ORTHO05D005411 4.0e-21 105.1 126 50.0
BraA09t36766Z Brassica rapa HOM05D004142 ORTHO05D005411 4.0e-21 105.1 126 50.0
BcaB07g31738 Brassica carinata HOM05D004142 ORTHO05D005411 8.9e-21 104.0 124 53.2
Hma1.2p1_0151F.1_g067370 Hydrangea macrophylla HOM05D004142 ORTHO05D005411 8.9e-21 104.0 114 59.6
C09p13280 Brassica napus HOM05D004142 ORTHO05D005411 1.2e-20 103.6 124 51.6
BolC9t54221H Brassica oleracea HOM05D004142 ORTHO05D005411 1.2e-20 103.6 124 51.6
Mapoly0043s0054 Marchantia polymorpha HOM05D004142 ORTHO05D005411 1.5e-20 103.2 128 50.0
BcaB03g16472 Brassica carinata HOM05D004142 ORTHO05D005411 3.4e-20 102.1 123 52.0
Cpa.g.sc60.17 Carica papaya HOM05D004142 ORTHO05D005411 7.6e-20 100.9 120 55.8
Ca_01556_v3 Cicer arietinum L. HOM05D004142 ORTHO05D005411 1.7e-19 99.8 161 44.1
Lsat_1_v5_gn_5_64620 Lactuca sativa HOM05D004142 ORTHO05D005411 8.4e-19 97.4 114 52.6
unitig_578.g16758 Utricularia gibba HOM05D004142 ORTHO05D005411 8.4e-19 97.4 127 47.2
SMO338G0043 Selaginella moellendorffii HOM05D004142 ORTHO05D005411 1.9e-18 96.3 66 71.2
Pp3c9_12610 Physcomitrium patens HOM05D004142 ORTHO05D005411 3.2e-18 95.5 104 53.8
Sp3g30590 Schrenkiella parvula HOM05D004142 ORTHO05D005411 3.2e-18 95.5 124 48.4
AUR62013175 Chenopodium quinoa HOM05D004142 ORTHO05D005411 2.7e-17 92.4 120 49.2
COL.COLO4_34310 Corchorus olitorius HOM05D004142 ORTHO05D005411 3.5e-17 92.0 120 51.7
BcaB07g31740 Brassica carinata HOM05D004142 ORTHO05D005411 1.7e-16 89.7 90 55.6
CBR_g44269 Chara braunii HOM05D004142 ORTHO05D005411 1.7e-16 89.7 67 68.7
BcaC06g36246 Brassica carinata HOM05D004142 ORTHO05D005411 8.7e-16 87.4 120 46.7
BolC7t41018H Brassica oleracea HOM05D004142 ORTHO05D005411 8.7e-16 87.4 120 46.7
Medtr5g078810 Medicago truncatula HOM05D004142 ORTHO05D005411 7.3e-15 84.3 66 72.7
C07p06050 Brassica napus HOM05D004142 ORTHO05D005411 1.8e-13 79.7 120 43.3
PRCOL_00005396 Prasinoderma coloniale HOM05D004142 ORTHO05D005411 5.3e-13 78.2 68 58.8
MCO08G220 Micromonas commoda HOM05D004142 ORTHO05D005411 9.9e-12 73.9 67 58.2
Cre01.g068377 Chlamydomonas reinhardtii HOM05D004142 ORTHO05D005411 2.1e-09 66.2 123 33.3
Lsat_1_v5_gn_5_140320 Lactuca sativa HOM05D004142 ORTHO05D036439 7.8e-09 64.3 97 41.2
Cfa024410 Carpinus fangiana HOM05D004142 ORTHO05D005411 3.0e-08 62.4 101 36.6
HPP92_025664 Vanilla planifolia HOM05D004142 ORTHO05D005411 2.8e-06 55.8 40 70.0


User provided reference genes

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