Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN27G1201 Fragaria x ananassa HOM05D005308 ORTHO05D006494 0.0e+00 1166.8 623 100.0
FAN15G3722 Fragaria x ananassa HOM05D005308 ORTHO05D006494 0.0e+00 1144.0 623 98.2
FvH4_2g39960 Fragaria vesca HOM05D005308 ORTHO05D006494 0.0e+00 1135.6 623 97.3
RcHm_v2.0_Chr6g0300791 Rosa chinensis HOM05D005308 ORTHO05D006494 2.7e-301 1038.1 626 85.9
Prupe.1G381500 Prunus persica HOM05D005308 ORTHO05D006494 2.3e-279 965.3 593 83.1
MD15G1030000 Malus domestica HOM05D005308 ORTHO05D006494 3.2e-265 918.3 602 78.9
MD08G1033400 Malus domestica HOM05D005308 ORTHO05D006494 6.6e-263 910.6 592 79.2
GSVIVG01009686001 Vitis vinifera HOM05D005308 ORTHO05D006494 4.8e-237 824.7 586 71.8
Cfa018137 Carpinus fangiana HOM05D005308 ORTHO05D006494 1.1e-236 823.5 602 71.4
QL02p007937 Quercus lobata HOM05D005308 ORTHO05D006494 6.9e-236 820.8 600 71.0
CiPaw.15G075700 Carya illinoinensis HOM05D005308 ORTHO05D006494 3.4e-235 818.5 602 70.6
Haze_17987 Corylus avellana HOM05D005308 ORTHO05D006494 4.9e-234 814.7 602 71.1
Atru.chr13.513 Acer truncatum HOM05D005308 ORTHO05D006494 6.4e-234 814.3 592 70.1
Atru.chr8.2603 Acer truncatum HOM05D005308 ORTHO05D006494 3.2e-233 812.0 595 69.9
Glyma.14G076200 Glycine max HOM05D005308 ORTHO05D006494 7.9e-232 807.4 597 69.8
Hma1.2p1_0077F.1_g039700 Hydrangea macrophylla HOM05D005308 ORTHO05D006494 7.9e-232 807.4 606 69.3
Ciclev10000534m.g Citrus clementina HOM05D005308 ORTHO05D006494 1.0e-231 807.0 610 69.7
Manes.05G161700 Manihot esculenta HOM05D005308 ORTHO05D006494 3.3e-230 802.0 601 68.9
Dinv39406 Davidia involucrata HOM05D005308 ORTHO05D006494 2.8e-229 798.9 602 70.3
PGR031G2270 Punica granatum HOM05D005308 ORTHO05D006494 8.1e-229 797.3 614 68.7
Lj5g0021582 Lotus japonicus HOM05D005308 ORTHO05D006494 1.5e-227 793.1 596 68.3
Medtr1g022045 Medicago truncatula HOM05D005308 ORTHO05D006494 1.1e-225 786.9 601 67.9
ClCG08G015210 Citrullus lanatus HOM05D005308 ORTHO05D006494 1.9e-225 786.2 604 67.7
ClCG08G015240 Citrullus lanatus HOM05D005308 ORTHO05D006494 1.9e-225 786.2 604 67.7
Sed0011840 Sechium edule HOM05D005308 ORTHO05D006494 4.6e-224 781.6 639 64.8
Duzib093G0415 Durio zibethinus HOM05D005308 ORTHO05D006494 1.3e-223 780.0 594 68.9
Sabra02G0199700 Salix brachista HOM05D005308 ORTHO05D006494 1.8e-223 779.6 598 67.7
Potri.014G180900 Populus trichocarpa HOM05D005308 ORTHO05D006494 3.0e-223 778.9 604 67.9
Glyma.17G249600 Glycine max HOM05D005308 ORTHO05D006494 3.9e-223 778.5 604 67.5
MELO3C010930.2 Cucumis melo HOM05D005308 ORTHO05D006494 7.4e-222 774.2 608 66.1
Potri.002G262900 Populus trichocarpa HOM05D005308 ORTHO05D006494 2.8e-221 772.3 598 67.2
Ca_13346_v3 Cicer arietinum L. HOM05D005308 ORTHO05D006494 3.7e-221 771.9 601 67.1
Duzib041G0136 Durio zibethinus HOM05D005308 ORTHO05D006494 3.7e-221 771.9 595 68.1
Gorai.009G203600 Gossypium raimondii HOM05D005308 ORTHO05D006494 8.1e-221 770.8 653 63.2
Phvul.001G015400 Phaseolus vulgaris HOM05D005308 ORTHO05D006494 8.1e-221 770.8 596 67.4
Thecc.08G024400 Theobroma cacao HOM05D005308 ORTHO05D006494 8.1e-221 770.8 595 67.6
Eucgr.F01908 Eucalyptus grandis HOM05D005308 ORTHO05D006494 1.5e-219 766.5 601 67.7
Gorai.010G011100 Gossypium raimondii HOM05D005308 ORTHO05D006494 1.5e-219 766.5 586 67.2
Psat6g007480 Pisum sativum HOM05D005308 ORTHO05D006494 2.0e-219 766.1 602 66.8
VMungo0647G0443 Vigna mungo HOM05D005308 ORTHO05D006494 3.4e-219 765.4 601 66.7
Duzib116G0819 Durio zibethinus HOM05D005308 ORTHO05D006494 4.5e-219 765.0 595 67.4
CsaV3_2G028560 Cucumis sativus L. HOM05D005308 ORTHO05D006494 1.0e-218 763.8 612 64.7
Gohir.D06G008300 Gossypium hirsutum HOM05D005308 ORTHO05D006494 1.0e-218 763.8 586 67.2
Lalb_Chr22g0355491 Lupinus albus HOM05D005308 ORTHO05D006494 1.3e-218 763.5 577 68.3
Gohir.A06G010900 Gossypium hirsutum HOM05D005308 ORTHO05D006494 1.7e-218 763.1 586 66.9
Gohir.D05G198500 Gossypium hirsutum HOM05D005308 ORTHO05D006494 4.9e-218 761.5 653 62.6
Gohir.A05G195300 Gossypium hirsutum HOM05D005308 ORTHO05D006494 2.5e-217 759.2 668 61.5
COL.COLO4_26340 Corchorus olitorius HOM05D005308 ORTHO05D006494 3.5e-216 755.4 550 71.8
Sed0021548 Sechium edule HOM05D005308 ORTHO05D006494 3.5e-216 755.4 639 63.1
TPR.G29756 Trifolium pratense HOM05D005308 ORTHO05D006494 8.7e-215 750.7 606 65.0
vmacro04517 Vaccinium macrocarpon HOM05D005308 ORTHO05D006494 8.2e-213 744.2 611 64.3
CsaV3_2G028600 Cucumis sativus L. HOM05D005308 ORTHO05D006494 4.5e-211 738.4 585 65.1
Nitab4.5_0003783g0070 Nicotiana tabacum HOM05D005308 ORTHO05D006494 2.9e-210 735.7 604 64.1
Nitab4.5_0000110g0380 Nicotiana tabacum HOM05D005308 ORTHO05D006494 3.2e-209 732.3 604 63.9
Rhsim07G0237100 Rhododendron simsii HOM05D005308 ORTHO05D006494 5.5e-209 731.5 603 64.7
PGSC0003DMG400005144 Solanum tuberosum HOM05D005308 ORTHO05D006494 7.9e-208 727.6 589 64.2
Lj4P784T41 Lonicera japonica HOM05D005308 ORTHO05D006494 1.0e-207 727.2 588 65.0
Solyc04g080180.1 Solanum lycopersicum HOM05D005308 ORTHO05D006494 5.1e-207 724.9 589 64.3
TWI73G1022 Tripterygium wilfordii HOM05D005308 ORTHO05D006494 1.1e-206 723.8 601 65.6
Sopen04g033770 Solanum pennellii HOM05D005308 ORTHO05D006494 5.7e-206 721.5 589 64.3
Cc03_g06460 Coffea canephora HOM05D005308 ORTHO05D006494 3.7e-205 718.8 597 62.8
AUR62032897 Chenopodium quinoa HOM05D005308 ORTHO05D006494 2.0e-203 713.0 594 63.1
EL10Ac9g23018 Beta vulgaris HOM05D005308 ORTHO05D006494 3.4e-203 712.2 600 62.7
Sc02g0006300 Simmondsia chinensis HOM05D005308 ORTHO05D006494 2.2e-202 709.5 600 63.3
Ah.01g011450 Amaranthus hybridus HOM05D005308 ORTHO05D006494 1.6e-200 703.4 595 61.8
CAN.G1126.42 Capsicum annuum HOM05D005308 ORTHO05D006494 3.6e-200 702.2 601 62.1
THA.LOC104813841 Tarenaya hassleriana HOM05D005308 ORTHO05D006494 6.1e-200 701.4 611 61.5
Aqoxy3G02057 Aquilegia oxysepala HOM05D005308 ORTHO05D006494 4.3e-198 695.3 613 59.7
Sp5g30270 Schrenkiella parvula HOM05D005308 ORTHO05D006494 3.7e-197 692.2 591 62.8
Thhalv10018268m.g Eutrema salsugineum HOM05D005308 ORTHO05D006494 5.9e-195 684.9 598 61.4
Peaxi162Scf00690g00113 Petunia axillaris HOM05D005308 ORTHO05D006494 1.2e-192 677.2 615 60.0
Carub.0002s2195 Capsella rubella HOM05D005308 ORTHO05D006494 1.4e-191 673.7 591 60.7
TAR376G0813 Trochodendron aralioides HOM05D005308 ORTHO05D006494 2.2e-189 666.4 534 65.0
CARHR068470 Cardamine hirsuta HOM05D005308 ORTHO05D006494 4.8e-189 665.2 589 59.6
AT1G75140 Arabidopsis thaliana HOM05D005308 ORTHO05D006494 1.1e-188 664.1 591 61.1
THA.LOC104806374 Tarenaya hassleriana HOM05D005308 ORTHO05D006494 1.1e-188 664.1 600 59.7
AUR62017754 Chenopodium quinoa HOM05D005308 ORTHO05D006494 4.1e-188 662.1 504 67.5
Oeu052497.1 Olea europaea HOM05D005308 ORTHO05D006494 4.1e-188 662.1 545 62.8
SalBow5G1122 Salvia bowleyana HOM05D005308 ORTHO05D006494 7.0e-188 661.4 520 63.7
Oeu016389.1 Olea europaea HOM05D005308 ORTHO05D006494 2.6e-187 659.4 545 62.9
CSS0027115 Camellia sinensis var. sinensis HOM05D005308 ORTHO05D006494 7.7e-187 657.9 575 61.7
MSTRG.11457 Avicennia marina HOM05D005308 ORTHO05D006494 1.0e-186 657.5 598 58.2
AL2G35040 Arabidopsis lyrata HOM05D005308 ORTHO05D006494 1.3e-186 657.1 591 60.4
Aa31LG7G4080 Aethionema arabicum HOM05D005308 ORTHO05D006494 1.5e-185 653.7 594 58.2
MSTRG.23132 Avicennia marina HOM05D005308 ORTHO05D006494 5.5e-185 651.7 599 58.6
DCAR_019524 Daucus carota HOM05D005308 ORTHO05D006494 9.4e-185 651.0 593 58.7
PSO782G4716 Papaver somniferum HOM05D005308 ORTHO05D006494 2.2e-181 639.8 666 52.6
Carub.0001s1896 Capsella rubella HOM05D005308 ORTHO05D006494 4.8e-181 638.6 595 57.3
AT1G19370 Arabidopsis thaliana HOM05D005308 ORTHO05D006494 1.4e-180 637.1 590 56.6
PSO063G3485 Papaver somniferum HOM05D005308 ORTHO05D006494 1.8e-180 636.7 666 52.4
BcaB02g06995 Brassica carinata HOM05D005308 ORTHO05D006494 3.1e-180 636.0 585 58.6
Migut.I00006 Erythranthe guttata HOM05D005308 ORTHO05D006494 3.1e-180 636.0 619 56.2
Sp1g17280 Schrenkiella parvula HOM05D005308 ORTHO05D006494 7.0e-180 634.8 589 56.0
C06p32820 Brassica napus HOM05D005308 ORTHO05D006494 1.2e-179 634.0 585 58.5
CARHR019960 Cardamine hirsuta HOM05D005308 ORTHO05D006494 2.0e-179 633.3 565 59.6
BolC6t38403H Brassica oleracea HOM05D005308 ORTHO05D006494 4.5e-179 632.1 586 58.5
HanXRQChr05g0151851 Helianthus annuus HOM05D005308 ORTHO05D006494 7.7e-179 631.3 602 57.6
AL1G31960 Arabidopsis lyrata HOM05D005308 ORTHO05D006494 1.3e-178 630.6 587 56.0
BraA06t24665Z Brassica rapa HOM05D005308 ORTHO05D006494 1.7e-178 630.2 598 56.9
A06p15530 Brassica napus HOM05D005308 ORTHO05D006494 8.5e-178 627.9 598 56.5
CSS0028044 Camellia sinensis var. sinensis HOM05D005308 ORTHO05D006494 1.9e-177 626.7 445 72.1
DCAR_020966 Daucus carota HOM05D005308 ORTHO05D006494 2.5e-177 626.3 552 61.2
Nn3g19273 Nelumbo nucifera HOM05D005308 ORTHO05D006494 1.6e-176 623.6 535 62.2
BraA07t30544Z Brassica rapa HOM05D005308 ORTHO05D006494 2.7e-176 622.9 593 57.3
BolC5t30482H Brassica oleracea HOM05D005308 ORTHO05D006494 3.6e-176 622.5 545 59.8
A07p29040 Brassica napus HOM05D005308 ORTHO05D006494 4.7e-176 622.1 593 57.2
BcaB02g07009 Brassica carinata HOM05D005308 ORTHO05D006494 1.4e-175 620.5 594 58.8
BcaB07g31957 Brassica carinata HOM05D005308 ORTHO05D006494 3.4e-174 615.9 599 56.9
Aa31LG4G5330 Aethionema arabicum HOM05D005308 ORTHO05D006494 1.8e-172 610.1 565 57.5
ECA246G5303 Erigeron canadensis HOM05D005308 ORTHO05D006494 7.7e-171 604.7 554 58.8
Thhalv10009294m.g Eutrema salsugineum HOM05D005308 ORTHO05D006494 6.1e-168 595.1 597 54.9
MBI04_g27271_MAGBIO Magnolia biondii HOM05D005308 ORTHO05D006494 1.7e-162 577.0 606 53.1
CDE11G0691 Ceratophyllum demersum HOM05D005308 ORTHO05D006494 6.6e-162 575.1 603 52.4
Lsat_1_v5_gn_5_29021 Lactuca sativa HOM05D005308 ORTHO05D006494 6.6e-162 575.1 515 58.6
ATR0829G103 Amborella trichopoda HOM05D005308 ORTHO05D006494 1.9e-145 520.4 586 50.2
SGA_v2.0_scaffold90G27910 Striga asiatica HOM05D005308 ORTHO05D006494 2.5e-145 520.0 619 48.1
SEGI_39092 Sequoiadendron giganteum HOM05D005308 ORTHO05D006494 3.6e-144 516.2 625 45.6
SHI08167 Sapria himalayana HOM05D005308 ORTHO05D006494 4.0e-143 512.7 513 54.8
MBI04_g21134_MAGBIO Magnolia biondii HOM05D005308 ORTHO05D006494 1.2e-136 491.1 596 48.5
Os06g0115200 Oryza sativa ssp. japonica HOM05D005308 ORTHO05D006494 1.2e-123 448.0 627 41.1
Zm00001eb269050 Zea mays HOM05D005308 ORTHO05D006494 8.1e-120 435.3 618 41.1
Actinidia38015 Actinidia chinensis HOM05D005308 ORTHO05D006494 9.9e-118 428.3 612 45.8
C05p17770 Brassica napus HOM05D005308 ORTHO05D006494 2.2e-101 374.0 265 68.7
Pp3c20_21760 Physcomitrium patens HOM05D005308 ORTHO05D006494 3.4e-94 350.1 536 39.6
BcaNung07223 Brassica carinata HOM05D005308 ORTHO05D006494 2.2e-93 347.4 331 57.4
AagrBONN_evm.TU.Sc2ySwM_228.2792 Anthoceros agrestis HOM05D005308 ORTHO05D006494 8.5e-93 345.5 467 41.1
BcaNung07297 Brassica carinata HOM05D005308 ORTHO05D006494 1.1e-92 345.1 240 69.2
Pp3c10_23930 Physcomitrium patens HOM05D005308 ORTHO05D006494 6.7e-90 335.9 591 36.5
SMO361G0791 Selaginella moellendorffii HOM05D005308 ORTHO05D006494 8.7e-90 335.5 416 44.0
Mapoly0094s0054 Marchantia polymorpha HOM05D005308 ORTHO05D006494 2.5e-89 334.0 561 36.7
BcaB02g07002 Brassica carinata HOM05D005308 ORTHO05D006494 2.5e-84 317.4 219 69.4
unitig_0.g1436 Utricularia gibba HOM05D005308 ORTHO05D006494 7.7e-78 295.8 315 50.5
unitig_0.g1437 Utricularia gibba HOM05D005308 ORTHO05D006494 8.6e-53 212.6 255 48.2
A07p29060 Brassica napus HOM05D005308 ORTHO05D006494 1.6e-51 208.4 130 75.4
MCO12G330 Micromonas commoda HOM05D005308 ORTHO05D006494 2.5e-20 104.8 538 22.3
BcaC07g37382 Brassica carinata HOM05D005308 ORTHO05D006494 1.9e-07 62.0 64 51.6
SHI17314 Sapria himalayana HOM05D005308 ORTHO05D006494 2.4e-07 61.6 139 33.1
CBR_g49554 Chara braunii HOM05D005308 ORTHO05D006494 5.4e-07 60.5 142 30.3


User provided reference genes

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