Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN27G1198 Fragaria x ananassa HOM05D000572 ORTHO05D019165 4.9e-111 404.4 199 100.0
FAN03G2090 Fragaria x ananassa HOM05D001502 ORTHO05D019165 2.6e-35 152.9 136 65.4
FAN19G2086 Fragaria x ananassa HOM05D000572 ORTHO05D019165 1.2e-27 127.5 148 52.0
FAN04G2422 Fragaria x ananassa HOM05D001502 ORTHO05D002950 3.4e-27 125.9 61 96.7
FAN18G4468 Fragaria x ananassa HOM05D001502 ORTHO05D002950 7.5e-27 124.8 61 95.1
FAN25G1299 Fragaria x ananassa HOM05D001502 ORTHO05D019165 7.5e-27 124.8 61 95.1
FAN08G1592 Fragaria x ananassa HOM05D001502 ORTHO05D002950 8.3e-26 121.3 61 93.4
FvH4_5g02400 Fragaria vesca HOM05D001502 ORTHO05D002066 2.0e-24 116.7 56 96.4
FAN13G3007 Fragaria x ananassa HOM05D001502 ORTHO05D002950 3.5e-24 115.9 61 93.4
RcHm_v2.0_Chr7g0197711 Rosa chinensis HOM05D001502 ORTHO05D002066 4.5e-24 115.5 56 94.6
FAN04G1177 Fragaria x ananassa HOM05D001502 ORTHO05D019165 1.9e-22 110.2 59 88.1
Duzib151G0489 Durio zibethinus HOM05D000572 ORTHO05D000840 1.4e-20 104.0 60 85.0
FvH4_4g15130 Fragaria vesca HOM05D000572 ORTHO05D000840 1.4e-20 104.0 60 81.7
FAN12G4122 Fragaria x ananassa HOM05D000572 ORTHO05D000840 1.4e-20 104.0 60 81.7
FAN07G2506 Fragaria x ananassa HOM05D000572 ORTHO05D000840 8.9e-20 101.3 60 80.0
FAN17G2497 Fragaria x ananassa HOM05D000572 ORTHO05D000840 8.9e-20 101.3 60 80.0
RcHm_v2.0_Chr4g0416741 Rosa chinensis HOM05D000572 ORTHO05D000840 4.4e-19 99.0 59 78.0
FvH4_4g00590 Fragaria vesca HOM05D000572 ORTHO05D019165 1.4e-17 94.0 52 84.6
Cfa015621 Carpinus fangiana HOM05D000572 ORTHO05D000840 3.2e-17 92.8 58 74.1
Haze_00923 Corylus avellana HOM05D000572 ORTHO05D000840 9.2e-17 91.3 58 70.7
FvH4_1g28410 Fragaria vesca HOM05D000572 ORTHO05D019165 2.0e-16 90.1 48 85.4
Actinidia36979 Actinidia chinensis HOM05D000572 ORTHO05D000840 2.7e-16 89.7 99 52.5
MD16G1189700 Malus domestica HOM05D000572 ORTHO05D000840 3.5e-16 89.4 83 56.6
MD13G1188900 Malus domestica HOM05D000572 ORTHO05D000840 4.6e-16 89.0 52 80.8
THA.LOC104818777 Tarenaya hassleriana HOM05D000572 ORTHO05D000840 4.6e-16 89.0 55 76.4
CiPaw.01G164100 Carya illinoinensis HOM05D000572 ORTHO05D000840 5.9e-16 88.6 55 72.7
CANSAT78G1323 Cannabis sativa HOM05D000572 ORTHO05D000840 7.8e-16 88.2 53 77.4
Lj3A740G52 Lonicera japonica HOM05D000572 ORTHO05D000840 1.0e-15 87.8 60 73.3
Dinv44509 Davidia involucrata HOM05D000572 ORTHO05D000840 1.3e-15 87.4 55 78.2
BcaNung02813 Brassica carinata HOM05D000572 ORTHO05D000840 1.7e-15 87.0 56 75.0
BcaNung03971 Brassica carinata HOM05D000572 ORTHO05D000840 1.7e-15 87.0 56 75.0
A06p36740 Brassica napus HOM05D000572 ORTHO05D000840 1.7e-15 87.0 56 75.0
C07p41790 Brassica napus HOM05D000572 ORTHO05D000840 1.7e-15 87.0 56 75.0
BolC7t44710H Brassica oleracea HOM05D000572 ORTHO05D000840 1.7e-15 87.0 56 75.0
BraA06t26596Z Brassica rapa HOM05D000572 ORTHO05D000840 1.7e-15 87.0 56 75.0
QL06p003211 Quercus lobata HOM05D000572 ORTHO05D000840 1.7e-15 87.0 59 69.5
Actinidia08504 Actinidia chinensis HOM05D000572 ORTHO05D000840 3.0e-15 86.3 56 73.2
CSS0034253 Camellia sinensis var. sinensis HOM05D000572 ORTHO05D000840 3.0e-15 86.3 55 76.4
Thhalv10003643m.g Eutrema salsugineum HOM05D000572 ORTHO05D000840 3.0e-15 86.3 55 74.5
Manes.15G027000 Manihot esculenta HOM05D000572 ORTHO05D000840 3.0e-15 86.3 55 76.4
Sp2g21510 Schrenkiella parvula HOM05D000572 ORTHO05D000840 3.0e-15 86.3 55 74.5
TWI73G0146 Tripterygium wilfordii HOM05D000572 ORTHO05D000840 3.0e-15 86.3 56 73.2
Aqoxy2G03356 Aquilegia oxysepala HOM05D000572 ORTHO05D000840 3.9e-15 85.9 55 74.5
Cpa.g.sc58.132 Carica papaya HOM05D000572 ORTHO05D000840 3.9e-15 85.9 55 74.5
ClCG06G006050 Citrullus lanatus HOM05D000572 ORTHO05D000840 6.6e-15 85.1 56 69.6
MELO3C014487.2 Cucumis melo HOM05D000572 ORTHO05D000840 6.6e-15 85.1 56 69.6
CsaV3_6G038240 Cucumis sativus L. HOM05D000572 ORTHO05D000840 6.6e-15 85.1 56 69.6
Duzib212G0457 Durio zibethinus HOM05D000572 ORTHO05D000840 8.6e-15 84.7 53 79.2
Atru.chr4.2505 Acer truncatum HOM05D000572 ORTHO05D000840 1.1e-14 84.3 49 83.7
AL6G38250 Arabidopsis lyrata HOM05D000572 ORTHO05D000840 1.1e-14 84.3 60 73.3
THA.LOC104802763 Tarenaya hassleriana HOM05D000572 ORTHO05D000840 1.1e-14 84.3 51 80.4
Dinv38429 Davidia involucrata HOM05D000572 ORTHO05D000840 1.5e-14 84.0 55 74.5
AT5G26240 Arabidopsis thaliana HOM05D000572 ORTHO05D000840 1.9e-14 83.6 59 72.9
Sabra10G0053200 Salix brachista HOM05D000572 ORTHO05D000840 2.5e-14 83.2 51 80.4
TAR636G1672 Trochodendron aralioides HOM05D000572 ORTHO05D000840 2.5e-14 83.2 59 71.2
Nn1g02253 Nelumbo nucifera HOM05D000572 ORTHO05D000840 3.3e-14 82.8 55 74.5
FvH4_4g00591 Fragaria vesca HOM05D001502 ORTHO05D019165 4.3e-14 82.4 40 95.0
Sed0013775 Sechium edule HOM05D000572 ORTHO05D000840 4.3e-14 82.4 56 66.1
Ciclev10004375m.g Citrus clementina HOM05D000572 ORTHO05D000840 5.6e-14 82.0 53 77.4
MBI04_g17678_MAGBIO Magnolia biondii HOM05D000572 ORTHO05D000840 5.6e-14 82.0 54 72.2
PSO170G4847 Papaver somniferum HOM05D000572 ORTHO05D000840 5.6e-14 82.0 59 72.9
PSO302G0089 Papaver somniferum HOM05D000572 ORTHO05D000840 5.6e-14 82.0 59 72.9
Prupe.1G156000 Prunus persica HOM05D000572 ORTHO05D000840 5.6e-14 82.0 59 69.5
TWI09G1185 Tripterygium wilfordii HOM05D000572 ORTHO05D000840 5.6e-14 82.0 56 75.0
Gohir.A01G023500 Gossypium hirsutum HOM05D000572 ORTHO05D000840 7.3e-14 81.6 53 75.5
Gohir.D01G021500 Gossypium hirsutum HOM05D000572 ORTHO05D000840 7.3e-14 81.6 53 75.5
Gorai.002G024000 Gossypium raimondii HOM05D000572 ORTHO05D000840 7.3e-14 81.6 53 75.5
Peaxi162Scf00437g00326 Petunia axillaris HOM05D000572 ORTHO05D000840 7.3e-14 81.6 59 67.8
CiPaw.02G095700 Carya illinoinensis HOM05D000572 ORTHO05D000840 9.5e-14 81.3 55 67.3
Lsat_1_v5_gn_7_65741 Lactuca sativa HOM05D000572 ORTHO05D000840 9.5e-14 81.3 58 70.7
PGR004G2523 Punica granatum HOM05D000572 ORTHO05D000840 9.5e-14 81.3 55 74.5
Rhsim02G0022800 Rhododendron simsii HOM05D000572 ORTHO05D000840 9.5e-14 81.3 56 67.9
Solyc09g075800.4 Solanum lycopersicum HOM05D000572 ORTHO05D000840 1.2e-13 80.9 75 57.3
Sopen09g030610 Solanum pennellii HOM05D000572 ORTHO05D000840 1.2e-13 80.9 75 57.3
Eucgr.F01498 Eucalyptus grandis HOM05D000572 ORTHO05D000840 2.1e-13 80.1 55 72.7
CAN.G907.24 Capsicum annuum HOM05D000572 ORTHO05D000840 2.8e-13 79.7 59 64.4
CDE05G0240 Ceratophyllum demersum HOM05D000572 ORTHO05D000840 2.8e-13 79.7 50 76.0
ECA240G0830 Erigeron canadensis HOM05D000572 ORTHO05D000840 2.8e-13 79.7 51 76.5
COL.COLO4_06192 Corchorus olitorius HOM05D000572 ORTHO05D000840 3.6e-13 79.3 53 73.6
MD06G1083000 Malus domestica HOM05D001502 ORTHO05D002066 3.6e-13 79.3 53 71.7
Prupe.5G100100 Prunus persica HOM05D001502 ORTHO05D002066 3.6e-13 79.3 57 73.7
vmacro15328 Vaccinium macrocarpon HOM05D000572 ORTHO05D000840 3.6e-13 79.3 56 67.9
Carub.0006s2406 Capsella rubella HOM05D000572 ORTHO05D000840 4.7e-13 79.0 60 70.0
Lalb_Chr09g0319771 Lupinus albus HOM05D000572 ORTHO05D000840 4.7e-13 79.0 55 69.1
Oeu034362.1 Olea europaea HOM05D000572 ORTHO05D000840 4.7e-13 79.0 55 69.1
Glyma.11G004600 Glycine max HOM05D000572 ORTHO05D000840 8.0e-13 78.2 56 67.9
QL12p033052 Quercus lobata HOM05D001502 ORTHO05D002066 8.0e-13 78.2 59 55.9
Glyma.01G239000 Glycine max HOM05D000572 ORTHO05D000840 1.1e-12 77.8 56 67.9
Nitab4.5_0000795g0040 Nicotiana tabacum HOM05D000572 ORTHO05D000840 1.1e-12 77.8 54 70.4
Nitab4.5_0008386g0010 Nicotiana tabacum HOM05D000572 ORTHO05D000840 1.1e-12 77.8 54 70.4
VMungo1215G0056 Vigna mungo HOM05D000572 ORTHO05D000840 1.1e-12 77.8 56 67.9
Gorai.011G168600 Gossypium raimondii HOM05D000572 ORTHO05D000840 1.8e-12 77.0 51 74.5
ATR0332G025 Amborella trichopoda HOM05D000572 ORTHO05D000840 2.3e-12 76.6 51 70.6
Phvul.002G047000 Phaseolus vulgaris HOM05D000572 ORTHO05D000840 2.3e-12 76.6 56 67.9
arahy.Tifrunner.gnm1.ann1.SGT6TA Arachis hypogaea HOM05D000572 ORTHO05D000840 3.1e-12 76.3 55 67.3
arahy.Tifrunner.gnm1.ann1.V66FSB Arachis hypogaea HOM05D000572 ORTHO05D000840 3.1e-12 76.3 55 67.3
HanXRQChr10g0303141 Helianthus annuus HOM05D000572 ORTHO05D000840 3.1e-12 76.3 51 74.5
Lj1g0004536 Lotus japonicus HOM05D000572 ORTHO05D000840 3.1e-12 76.3 56 66.1
Thecc.04G227900 Theobroma cacao HOM05D000572 ORTHO05D000840 3.1e-12 76.3 50 74.0
GSVIVG01017933001 Vitis vinifera HOM05D000572 ORTHO05D000840 5.2e-12 75.5 55 70.9
Cfa012183 Carpinus fangiana HOM05D001502 ORTHO05D002066 6.8e-12 75.1 59 52.5
Sc19g0004290 Simmondsia chinensis HOM05D000572 ORTHO05D000840 6.8e-12 75.1 55 63.6
Cc03_g03520 Coffea canephora HOM05D000572 ORTHO05D000840 1.2e-11 74.3 55 69.1
SalBow5G2083 Salvia bowleyana HOM05D000572 ORTHO05D000840 1.2e-11 74.3 60 61.7
Hund22744 Selenicereus undatus HOM05D000572 ORTHO05D000840 1.5e-11 73.9 55 61.8
EL10Ac3g06440 Beta vulgaris HOM05D000572 ORTHO05D000840 2.0e-11 73.6 53 64.2
Gohir.D10G151400 Gossypium hirsutum HOM05D000572 ORTHO05D000840 2.0e-11 73.6 42 85.7
Potri.010G090100 Populus trichocarpa HOM05D000572 ORTHO05D000840 3.4e-11 72.8 54 68.5
Haze_08834 Corylus avellana HOM05D001502 ORTHO05D002066 4.4e-11 72.4 58 51.7
Zm00001eb053800 Zea mays HOM05D000572 ORTHO05D000840 4.4e-11 72.4 54 61.1
SGA_v2.0_scaffold10G05099 Striga asiatica HOM05D000572 ORTHO05D000840 5.8e-11 72.0 60 61.7
Dinv37642 Davidia involucrata HOM05D001502 ORTHO05D002066 7.5e-11 71.6 59 57.6
AUR62038633 Chenopodium quinoa HOM05D000572 ORTHO05D000840 9.8e-11 71.2 56 58.9
Ah.13g073920 Amaranthus hybridus HOM05D000572 ORTHO05D000840 1.3e-10 70.9 56 58.9
CiPaw.12G093200 Carya illinoinensis HOM05D001502 ORTHO05D002066 1.7e-10 70.5 55 60.0
Dinv38944 Davidia involucrata HOM05D001502 ORTHO05D002950 1.7e-10 70.5 59 57.6
MSTRG.21845 Avicennia marina HOM05D000572 ORTHO05D000840 8.3e-10 68.2 55 63.6
Medtr5g005990 Medicago truncatula HOM05D000572 ORTHO05D000840 1.1e-09 67.8 57 63.2
TPR.G37927 Trifolium pratense HOM05D000572 ORTHO05D000840 1.1e-09 67.8 57 63.2
CiPaw.11G135400 Carya illinoinensis HOM05D001502 ORTHO05D002066 1.9e-09 67.0 58 50.0
Psat4g212280 Pisum sativum HOM05D000572 ORTHO05D000840 1.9e-09 67.0 48 72.9
unitig_22.g6328 Utricularia gibba HOM05D000572 ORTHO05D000840 2.4e-09 66.6 66 59.1
HPP92_024872 Vanilla planifolia HOM05D000572 ORTHO05D000840 2.4e-09 66.6 54 57.4
Atru.chr9.2190 Acer truncatum HOM05D001502 ORTHO05D002066 3.2e-09 66.2 59 52.5
COL.COLO4_34462 Corchorus olitorius HOM05D001502 ORTHO05D002066 4.1e-09 65.9 55 58.2
GSVIVG01019755001 Vitis vinifera HOM05D001502 ORTHO05D002950 5.4e-09 65.5 55 56.4
Duzib084G0397 Durio zibethinus HOM05D001502 ORTHO05D002066 7.0e-09 65.1 59 52.5
Sed0002312 Sechium edule HOM05D000572 ORTHO05D000840 7.0e-09 65.1 74 47.3
Hma1.2p1_0896F.1_g234020 Hydrangea macrophylla HOM05D001502 ORTHO05D002066 9.2e-09 64.7 55 56.4
Glyma.08G014600 Glycine max HOM05D001502 ORTHO05D002066 1.2e-08 64.3 59 49.2
Potri.001G104200 Populus trichocarpa HOM05D001502 ORTHO05D002066 1.6e-08 63.9 58 51.7
Ciclev10019223m.g Citrus clementina HOM05D001502 ORTHO05D002066 2.0e-08 63.5 59 50.8
Rhsim02G0231100 Rhododendron simsii HOM05D001502 ORTHO05D002950 2.0e-08 63.5 117 39.3
Potri.003G127500 Populus trichocarpa HOM05D001502 ORTHO05D002066 3.5e-08 62.8 58 48.3
VMungo0251G2117 Vigna mungo HOM05D001502 ORTHO05D002066 3.5e-08 62.8 61 45.9
Glyma.05G207900 Glycine max HOM05D001502 ORTHO05D002066 4.6e-08 62.4 59 47.5
Sabra01G0078600 Salix brachista HOM05D001502 ORTHO05D002066 4.6e-08 62.4 58 50.0
vmacro11333 Vaccinium macrocarpon HOM05D001502 ORTHO05D002066 6.0e-08 62.0 58 55.2
Sp6g05990 Schrenkiella parvula HOM05D001502 ORTHO05D002066 7.8e-08 61.6 55 54.5
Carub.0006s3038 Capsella rubella HOM05D001502 ORTHO05D002066 1.0e-07 61.2 55 54.5
Phvul.002G289500 Phaseolus vulgaris HOM05D001502 ORTHO05D002066 1.0e-07 61.2 59 45.8
Sabra03G0090500 Salix brachista HOM05D001502 ORTHO05D002066 1.0e-07 61.2 58 46.6
Aa31LG11G10300 Aethionema arabicum HOM05D000572 ORTHO05D000840 1.7e-07 60.5 54 59.3
Cc08_g14730 Coffea canephora HOM05D001502 ORTHO05D002066 3.0e-07 59.7 55 54.5
DCAR_027188 Daucus carota HOM05D000572 ORTHO05D000840 3.9e-07 59.3 54 57.4
PGR042G1921 Punica granatum HOM05D001502 ORTHO05D002066 3.9e-07 59.3 63 47.6
Thhalv10028472m.g Eutrema salsugineum HOM05D001502 ORTHO05D002066 6.6e-07 58.5 53 54.7
Manes.02G022000 Manihot esculenta HOM05D001502 ORTHO05D002066 8.6e-07 58.2 58 46.6
Mapoly0061s0111 Marchantia polymorpha HOM05D000572 ORTHO05D000840 8.6e-07 58.2 53 49.1
Pp3c23_11120 Physcomitrium patens HOM05D000572 ORTHO05D000840 1.9e-06 57.0 52 55.8
Actinidia02006 Actinidia chinensis HOM05D001502 ORTHO05D002066 2.5e-06 56.6 59 49.2
Gohir.A03G016400 Gossypium hirsutum HOM05D001502 ORTHO05D002066 2.5e-06 56.6 43 62.8
BcaC03g16350 Brassica carinata HOM05D001502 ORTHO05D002066 3.3e-06 56.2 60 48.3
CSS0049763 Camellia sinensis var. sinensis HOM05D001502 ORTHO05D002066 3.3e-06 56.2 56 51.8
Eucgr.E00596 Eucalyptus grandis HOM05D001502 ORTHO05D002066 3.3e-06 56.2 59 44.1
Pp3c23_5320 Physcomitrium patens HOM05D000572 ORTHO05D000840 3.3e-06 56.2 57 49.1
Aa31LG9G10780 Aethionema arabicum HOM05D001502 ORTHO05D002066 4.3e-06 55.8 54 50.0
CSS0025049 Camellia sinensis var. sinensis HOM05D001502 ORTHO05D002066 4.3e-06 55.8 56 51.8
CARHR255100 Cardamine hirsuta HOM05D001502 ORTHO05D002066 4.3e-06 55.8 54 51.9
A02p26240 Brassica napus HOM05D001502 ORTHO05D002066 5.6e-06 55.5 54 50.0
BraA02t07625Z Brassica rapa HOM05D001502 ORTHO05D002066 5.6e-06 55.5 54 50.0
Lj4g0003948 Lotus japonicus HOM05D001502 ORTHO05D002066 5.6e-06 55.5 56 48.2
Cpa.g.sc74.50 Carica papaya HOM05D001502 ORTHO05D002066 7.3e-06 55.1 59 47.5
C02p41740 Brassica napus HOM05D001502 ORTHO05D002066 9.5e-06 54.7 54 50.0
BolC2t10190H Brassica oleracea HOM05D001502 ORTHO05D002066 9.5e-06 54.7 54 50.0


User provided reference genes

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