Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN27G1110 Fragaria x ananassa HOM05D004879 ORTHO05D008271 2.3e-218 761.9 384 100.0
FvH4_2g00490 Fragaria vesca HOM05D004879 ORTHO05D008271 7.7e-121 438.0 228 98.2
FAN24G3181 Fragaria x ananassa HOM05D004879 ORTHO05D008271 7.7e-121 438.0 228 98.2
RcHm_v2.0_Chr6g0250811 Rosa chinensis HOM05D004879 ORTHO05D008271 6.1e-118 428.3 228 94.7
RcHm_v2.0_Chr6g0250481 Rosa chinensis HOM05D004879 ORTHO05D008271 4.8e-115 418.7 228 93.4
FAN06G1945 Fragaria x ananassa HOM05D004879 ORTHO05D008271 2.5e-95 353.2 187 97.3
Haze_14485 Corylus avellana HOM05D004879 ORTHO05D008271 4.7e-94 349.0 228 77.6
QL01p020549 Quercus lobata HOM05D004879 ORTHO05D008271 1.4e-93 347.4 227 77.5
Cfa007603 Carpinus fangiana HOM05D004879 ORTHO05D008271 1.8e-93 347.1 228 77.2
CiPaw.13G145200 Carya illinoinensis HOM05D004879 ORTHO05D008271 4.0e-93 345.9 228 76.3
MD10G1003100 Malus domestica HOM05D004879 ORTHO05D008271 1.2e-92 344.4 261 70.9
Duzib041G0713 Durio zibethinus HOM05D004879 ORTHO05D008271 2.4e-90 336.7 215 75.8
Dinv15026 Davidia involucrata HOM05D004879 ORTHO05D008271 1.6e-89 334.0 226 74.8
Gorai.013G107000 Gossypium raimondii HOM05D004879 ORTHO05D008271 2.7e-89 333.2 228 69.3
Gohir.A02G109100 Gossypium hirsutum HOM05D004879 ORTHO05D008271 7.8e-89 331.6 228 68.9
Gohir.D03G062100 Gossypium hirsutum HOM05D004879 ORTHO05D008271 7.8e-89 331.6 228 68.9
Prupe.8G030900 Prunus persica HOM05D004879 ORTHO05D008271 1.0e-88 331.3 265 68.7
Lj1P989T20 Lonicera japonica HOM05D004879 ORTHO05D008271 1.1e-87 327.8 217 75.1
Nitab4.5_0005379g0030 Nicotiana tabacum HOM05D004879 ORTHO05D008271 7.3e-87 325.1 214 74.3
Manes.01G175400 Manihot esculenta HOM05D004879 ORTHO05D008271 1.6e-86 323.9 228 70.2
Cc00_g20630 Coffea canephora HOM05D004879 ORTHO05D008271 2.1e-86 323.6 214 76.2
Peaxi162Scf00192g00042 Petunia axillaris HOM05D004879 ORTHO05D008271 2.1e-86 323.6 216 74.1
Lalb_Chr04g0249461 Lupinus albus HOM05D004879 ORTHO05D008271 2.8e-86 323.2 228 69.3
Nitab4.5_0000832g0030 Nicotiana tabacum HOM05D004879 ORTHO05D008271 8.1e-86 321.6 214 73.8
Psat0s2829g0160 Pisum sativum HOM05D004879 ORTHO05D008271 1.8e-85 320.5 228 69.7
Psat0s4349g0080 Pisum sativum HOM05D004879 ORTHO05D008271 3.1e-85 319.7 228 69.3
Medtr5g088570 Medicago truncatula HOM05D004879 ORTHO05D008271 4.0e-85 319.3 228 68.4
LjContig00564g0012926 Lotus japonicus HOM05D004879 ORTHO05D008271 6.8e-85 318.5 228 69.3
Glyma.02G276400 Glycine max HOM05D004879 ORTHO05D008271 8.9e-85 318.2 216 72.2
Sed0013542 Sechium edule HOM05D004879 ORTHO05D008271 8.9e-85 318.2 215 72.1
Eucgr.B03769 Eucalyptus grandis HOM05D004879 ORTHO05D008271 1.2e-84 317.8 228 69.7
Actinidia07011 Actinidia chinensis HOM05D004879 ORTHO05D008271 1.5e-84 317.4 227 71.4
CAN.G1097.5 Capsicum annuum HOM05D004879 ORTHO05D008271 1.5e-84 317.4 216 71.8
MELO3C004190.2 Cucumis melo HOM05D004879 ORTHO05D008271 1.5e-84 317.4 215 72.6
Rhsim13G0203600 Rhododendron simsii HOM05D004879 ORTHO05D008271 1.5e-84 317.4 228 68.4
COL.COLO4_35490 Corchorus olitorius HOM05D004879 ORTHO05D008271 3.4e-84 316.2 224 68.8
ECA240G2819 Erigeron canadensis HOM05D004879 ORTHO05D008271 5.8e-84 315.5 228 68.4
MD12G1125200 Malus domestica HOM05D000005 ORTHO05D000012 5.8e-84 315.5 223 74.9
PGR102G1558 Punica granatum HOM05D004879 ORTHO05D008271 5.8e-84 315.5 228 68.0
Solyc03g031430.1 Solanum lycopersicum HOM05D004879 ORTHO05D008271 5.8e-84 315.5 213 72.3
Phvul.008G205100 Phaseolus vulgaris HOM05D004879 ORTHO05D008271 9.8e-84 314.7 228 68.0
Glyma.14G039400 Glycine max HOM05D004879 ORTHO05D008271 1.3e-83 314.3 216 71.8
Ciclev10002295m.g Citrus clementina HOM05D004879 ORTHO05D008271 1.7e-83 313.9 227 68.7
Nn7g37079 Nelumbo nucifera HOM05D004879 ORTHO05D008271 2.2e-83 313.5 228 67.5
Sopen03g005320 Solanum pennellii HOM05D004879 ORTHO05D008271 2.2e-83 313.5 213 71.8
CsaV3_2G007030 Cucumis sativus L. HOM05D004879 ORTHO05D008271 2.9e-83 313.2 215 72.6
TPR.G14628 Trifolium pratense HOM05D004879 ORTHO05D008271 3.7e-83 312.8 228 68.4
Ca_06172_v3 Cicer arietinum L. HOM05D004879 ORTHO05D008271 4.9e-83 312.4 228 67.1
VMungo0647G0171 Vigna mungo HOM05D004879 ORTHO05D008271 6.4e-83 312.0 227 67.8
DCAR_018145 Daucus carota HOM05D004879 ORTHO05D008271 8.3e-83 311.6 212 72.2
Potri.001G224400 Populus trichocarpa HOM05D004879 ORTHO05D008271 8.3e-83 311.6 227 65.6
Sc06g0004840 Simmondsia chinensis HOM05D004879 ORTHO05D008271 8.3e-83 311.6 228 64.9
PGSC0003DMG400024255 Solanum tuberosum HOM05D004879 ORTHO05D008271 1.1e-82 311.2 229 66.8
ClCG02G014970 Citrullus lanatus HOM05D004879 ORTHO05D008271 1.9e-82 310.5 215 72.1
Sabra16G0133100 Salix brachista HOM05D004879 ORTHO05D008271 4.1e-82 309.3 227 65.6
Cpa.g.sc36.59 Carica papaya HOM05D004879 ORTHO05D008271 1.2e-81 307.8 210 70.5
PSO384G4586 Papaver somniferum HOM05D004879 ORTHO05D008271 1.2e-81 307.8 221 67.9
PSO339G6668 Papaver somniferum HOM05D004879 ORTHO05D008271 1.3e-80 304.3 221 67.0
TWI79G1014 Tripterygium wilfordii HOM05D004879 ORTHO05D008271 1.3e-80 304.3 212 69.8
Sp1g19390 Schrenkiella parvula HOM05D004879 ORTHO05D008271 1.7e-80 303.9 224 65.6
Aqoxy1G01328 Aquilegia oxysepala HOM05D004879 ORTHO05D008271 2.3e-80 303.5 230 64.8
CDE10G1192 Ceratophyllum demersum HOM05D004879 ORTHO05D008271 2.3e-80 303.5 226 65.5
AUR62000245 Chenopodium quinoa HOM05D004879 ORTHO05D008271 3.0e-80 303.1 216 67.6
Migut.F00393 Erythranthe guttata HOM05D004879 ORTHO05D008271 3.9e-80 302.8 220 68.6
CSS0042269 Camellia sinensis var. sinensis HOM05D004879 ORTHO05D008271 1.5e-79 300.8 222 68.9
TWI31G0278 Tripterygium wilfordii HOM05D004879 ORTHO05D008271 1.9e-79 300.4 212 71.2
A07p14910 Brassica napus HOM05D004879 ORTHO05D008271 2.5e-79 300.1 217 66.4
SGA_v2.0_scaffold2G01091 Striga asiatica HOM05D004879 ORTHO05D008271 2.5e-79 300.1 224 64.7
BraA07t29233Z Brassica rapa HOM05D004879 ORTHO05D008271 4.3e-79 299.3 217 66.4
BcaC06g34908 Brassica carinata HOM05D004879 ORTHO05D008271 5.6e-79 298.9 217 66.4
C07p21890 Brassica napus HOM05D004879 ORTHO05D008271 5.6e-79 298.9 217 66.4
C07p21910 Brassica napus HOM05D004879 ORTHO05D008271 5.6e-79 298.9 217 66.4
BolC7t42723H Brassica oleracea HOM05D004879 ORTHO05D008271 5.6e-79 298.9 217 66.4
AL1G35040 Arabidopsis lyrata HOM05D004879 ORTHO05D008271 7.3e-79 298.5 229 62.9
MBI13_g10954_MAGBIO Magnolia biondii HOM05D004879 ORTHO05D008271 9.5e-79 298.1 217 67.3
BcaB08g37376 Brassica carinata HOM05D004879 ORTHO05D008271 1.6e-78 297.4 216 64.8
BcaB08g37377 Brassica carinata HOM05D004879 ORTHO05D008271 1.6e-78 297.4 216 64.8
AT1G21840 Arabidopsis thaliana HOM05D004879 ORTHO05D008271 2.1e-78 297.0 216 65.3
EL10Ac4g10052 Beta vulgaris HOM05D004879 ORTHO05D008271 2.8e-78 296.6 215 66.0
Thhalv10009605m.g Eutrema salsugineum HOM05D004879 ORTHO05D008271 1.1e-77 294.7 224 63.4
Carub.0001s2129 Capsella rubella HOM05D004879 ORTHO05D008271 1.4e-77 294.3 216 64.8
Atru.chr3.2942 Acer truncatum HOM05D004879 ORTHO05D008271 1.8e-77 293.9 209 67.5
CANSAT54G0046 Cannabis sativa HOM05D004879 ORTHO05D008271 1.5e-76 290.8 222 65.8
unitig_37.g12512 Utricularia gibba HOM05D004879 ORTHO05D008271 1.5e-76 290.8 224 64.7
CARHR022120 Cardamine hirsuta HOM05D004879 ORTHO05D008271 9.9e-76 288.1 211 65.4
ATR0782G197 Amborella trichopoda HOM05D004879 ORTHO05D008271 2.9e-75 286.6 226 60.2
BcaC06g34909 Brassica carinata HOM05D004879 ORTHO05D008271 1.1e-74 284.6 217 65.0
Aa31LG7G5930 Aethionema arabicum HOM05D004879 ORTHO05D008271 5.4e-74 282.3 215 64.2
Os02g0168000 Oryza sativa ssp. japonica HOM05D004879 ORTHO05D008271 2.7e-73 280.0 231 61.9
MD12G1125400 Malus domestica HOM05D004879 ORTHO05D008271 5.6e-71 272.3 184 77.2
HPP92_011765 Vanilla planifolia HOM05D004879 ORTHO05D008271 6.2e-70 268.9 217 61.3
Zm00001eb232950 Zea mays HOM05D004879 ORTHO05D008271 2.0e-68 263.8 215 60.5
MSTRG.8775 Avicennia marina HOM05D004879 ORTHO05D008271 2.9e-67 260.0 223 62.3
Hma1.2p1_1843F.1_g305050 Hydrangea macrophylla HOM05D004879 ORTHO05D008271 9.3e-66 255.0 175 73.1
SEGI_07822 Sequoiadendron giganteum HOM05D004879 ORTHO05D008271 1.9e-63 247.3 225 55.1
SalBow4G0907 Salvia bowleyana HOM05D004879 ORTHO05D008271 2.1e-62 243.8 185 63.2
RcHm_v2.0_Chr1g0323071 Rosa chinensis HOM05D004879 ORTHO05D008271 4.3e-55 219.5 126 88.9
Mapoly0075s0047 Marchantia polymorpha HOM05D004879 ORTHO05D008271 2.8e-54 216.9 210 49.5
SMO137G0182 Selaginella moellendorffii HOM05D004879 ORTHO05D008271 4.0e-53 213.0 210 51.9
Thecc.08G138700 Theobroma cacao HOM05D004879 ORTHO05D008271 3.4e-52 209.9 139 71.2
RcHm_v2.0_Chr1g0322261 Rosa chinensis HOM05D004879 ORTHO05D008271 3.8e-51 206.5 116 92.2
arahy.Tifrunner.gnm1.ann1.WGUK12 Arachis hypogaea HOM05D004879 ORTHO05D008271 7.4e-47 192.2 216 48.1
arahy.Tifrunner.gnm1.ann1.V07RCD Arachis hypogaea HOM05D004879 ORTHO05D008271 9.6e-47 191.8 216 49.1
Pp3c21_1390 Physcomitrium patens HOM05D004879 ORTHO05D008271 1.2e-44 184.9 217 47.0
CBR_g70735 Chara braunii HOM05D004879 ORTHO05D008271 4.6e-41 172.9 260 38.1
HPP92_011772 Vanilla planifolia HOM05D004879 ORTHO05D008271 8.7e-40 168.7 141 58.2
Actinidia37185 Actinidia chinensis HOM05D004879 ORTHO05D008271 4.8e-38 162.9 192 50.5
Oeu030259.1 Olea europaea HOM05D004879 ORTHO05D008271 3.4e-36 156.8 218 43.1
FAN24G2371 Fragaria x ananassa HOM05D004879 ORTHO05D000038 2.9e-35 153.7 110 77.3
GSVIVG01037361001 Vitis vinifera HOM05D004879 ORTHO05D008271 2.7e-33 147.1 228 41.2
arahy.Tifrunner.gnm1.ann1.4BAK6K Arachis hypogaea HOM05D004879 ORTHO05D009754 3.6e-33 146.7 213 41.3
SHI10553 Sapria himalayana HOM05D004879 ORTHO05D008271 1.3e-30 138.3 212 38.2
RcHm_v2.0_Chr1g0322441 Rosa chinensis HOM05D004879 ORTHO05D008271 6.5e-27 125.9 68 91.2
MCO04G443 Micromonas commoda HOM05D004879 ORTHO05D008271 1.1e-26 125.2 254 37.0
CBR_g27954 Chara braunii HOM05D004879 ORTHO05D008271 2.1e-25 120.9 152 42.1
RcHm_v2.0_Chr1g0322271 Rosa chinensis HOM05D004879 ORTHO05D008271 2.1e-25 120.9 69 84.1
RcHm_v2.0_Chr1g0322591 Rosa chinensis HOM05D004879 ORTHO05D008271 2.7e-25 120.6 73 79.5
RcHm_v2.0_Chr1g0322581 Rosa chinensis HOM05D004879 ORTHO05D008271 6.9e-21 105.9 66 83.3
RcHm_v2.0_Chr1g0322541 Rosa chinensis HOM05D004879 ORTHO05D008271 2.3e-16 90.9 50 92.0
RcHm_v2.0_Chr1g0322461 Rosa chinensis HOM05D004879 ORTHO05D008271 6.3e-14 82.8 56 73.2
PRCOL_00002215 Prasinoderma coloniale HOM05D005590 ORTHO05D007084 1.2e-09 68.6 240 25.0
arahy.Tifrunner.gnm1.ann1.0GE5DD Arachis hypogaea HOM05D004879 ORTHO05D008271 3.7e-06 57.0 115 33.0


User provided reference genes

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