Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN27G0975 Fragaria x ananassa HOM05D004053 ORTHO05D005065 0.0e+00 1095.1 555 100.0
FAN20G0349 Fragaria x ananassa HOM05D004053 ORTHO05D005065 7.0e-232 807.4 417 98.1
FAN24G1933 Fragaria x ananassa HOM05D004053 ORTHO05D005065 1.7e-230 802.7 417 97.6
FAN15G3549 Fragaria x ananassa HOM05D004053 ORTHO05D005065 2.3e-230 802.4 417 97.1
FvH4_2g24050 Fragaria vesca HOM05D004053 ORTHO05D005065 5.0e-230 801.2 417 97.4
RcHm_v2.0_Chr6g0291821 Rosa chinensis HOM05D004053 ORTHO05D005065 3.0e-214 748.8 417 90.6
Prupe.8G245900 Prunus persica HOM05D004053 ORTHO05D005065 1.3e-164 583.9 419 73.3
MD11G1290800 Malus domestica HOM05D004053 ORTHO05D005065 1.6e-151 540.4 419 67.5
MD03G1269800 Malus domestica HOM05D004053 ORTHO05D005065 7.4e-141 505.0 419 64.4
QL12p022856 Quercus lobata HOM05D004053 ORTHO05D005065 2.1e-127 460.3 421 58.9
Haze_04757 Corylus avellana HOM05D004053 ORTHO05D005065 1.5e-125 454.1 423 58.4
CANSAT25G0924 Cannabis sativa HOM05D004053 ORTHO05D005065 1.1e-123 448.0 425 59.3
Cfa006097 Carpinus fangiana HOM05D004053 ORTHO05D005065 6.5e-121 438.7 423 57.7
Ciclev10020315m.g Citrus clementina HOM05D004053 ORTHO05D005065 8.5e-121 438.3 423 57.0
GSVIVG01011074001 Vitis vinifera HOM05D004053 ORTHO05D005065 7.0e-115 418.7 432 56.0
Atru.chr5.1352 Acer truncatum HOM05D004053 ORTHO05D005065 1.7e-113 414.1 416 56.5
Manes.01G210500 Manihot esculenta HOM05D004053 ORTHO05D005065 1.5e-112 411.0 421 56.1
TAR362G1031 Trochodendron aralioides HOM05D004053 ORTHO05D005065 1.6e-111 407.5 437 53.3
Duzib133G0805 Durio zibethinus HOM05D004053 ORTHO05D005065 1.0e-110 404.8 423 52.7
Cpa.g.sc9.119 Carica papaya HOM05D004053 ORTHO05D005065 1.8e-110 404.1 432 52.1
Duzib138G0912 Durio zibethinus HOM05D004053 ORTHO05D005065 6.8e-110 402.1 423 53.0
CiPaw.07G095100 Carya illinoinensis HOM05D004053 ORTHO05D005065 8.3e-108 395.2 421 53.0
Thecc.01G284500 Theobroma cacao HOM05D004053 ORTHO05D005065 3.8e-105 386.3 422 50.7
Hma1.2p1_0257F.1_g103830 Hydrangea macrophylla HOM05D004053 ORTHO05D005065 5.0e-105 386.0 394 53.8
Rhsim13G0022200 Rhododendron simsii HOM05D004053 ORTHO05D005065 6.6e-105 385.6 450 49.3
Actinidia24316 Actinidia chinensis HOM05D004053 ORTHO05D005065 8.6e-105 385.2 419 50.4
CSS0023044 Camellia sinensis var. sinensis HOM05D004053 ORTHO05D005065 8.6e-105 385.2 424 51.2
Nn4g26160 Nelumbo nucifera HOM05D004053 ORTHO05D005065 1.9e-104 384.0 436 51.6
Gohir.A12G006400 Gossypium hirsutum HOM05D004053 ORTHO05D005065 3.6e-103 379.8 424 50.0
Gohir.D12G005800 Gossypium hirsutum HOM05D004053 ORTHO05D005065 1.4e-102 377.9 424 49.5
Potri.014G138200 Populus trichocarpa HOM05D004053 ORTHO05D005065 4.0e-102 376.3 424 51.2
Gorai.008G005800 Gossypium raimondii HOM05D004053 ORTHO05D005065 8.9e-102 375.2 424 49.5
Potri.002G215800 Populus trichocarpa HOM05D004053 ORTHO05D005065 1.7e-100 370.9 420 51.0
Eucgr.K03405 Eucalyptus grandis HOM05D004053 ORTHO05D005065 1.1e-99 368.2 423 49.2
vmacro02546 Vaccinium macrocarpon HOM05D004053 ORTHO05D005065 2.4e-99 367.1 429 48.7
ClCG07G000110 Citrullus lanatus HOM05D004053 ORTHO05D005065 1.0e-97 361.7 424 48.8
Lj1C43T4 Lonicera japonica HOM05D004053 ORTHO05D005065 1.3e-97 361.3 431 49.0
TWI14G1274 Tripterygium wilfordii HOM05D004053 ORTHO05D005065 1.1e-96 358.2 422 50.2
MELO3C014420.2 Cucumis melo HOM05D004053 ORTHO05D005065 3.3e-96 356.7 420 48.6
Dinv11260 Davidia involucrata HOM05D004053 ORTHO05D005065 4.3e-96 356.3 356 55.3
CsaV3_6G036930 Cucumis sativus L. HOM05D004053 ORTHO05D005065 3.6e-95 353.2 417 48.2
Gorai.007G133800 Gossypium raimondii HOM05D004053 ORTHO05D005065 1.8e-94 350.9 419 49.2
PSO832G4321 Papaver somniferum HOM05D004053 ORTHO05D005065 2.3e-94 350.5 437 47.4
PGR044G2575 Punica granatum HOM05D004053 ORTHO05D005065 6.8e-94 349.0 421 48.9
Glyma.10G024200 Glycine max HOM05D004053 ORTHO05D005065 1.2e-93 348.2 426 50.7
Gohir.D11G124800 Gossypium hirsutum HOM05D004053 ORTHO05D005065 1.2e-93 348.2 419 48.7
Glyma.02G149700 Glycine max HOM05D004053 ORTHO05D005065 2.0e-93 347.4 426 50.7
Nn1g02136 Nelumbo nucifera HOM05D004053 ORTHO05D005065 1.7e-92 344.4 392 50.0
Gohir.A11G120100 Gossypium hirsutum HOM05D004053 ORTHO05D005065 5.4e-91 339.3 419 48.7
Duzib211G0472 Durio zibethinus HOM05D004053 ORTHO05D005065 3.5e-90 336.7 341 54.5
Lj5g0001920 Lotus japonicus HOM05D004053 ORTHO05D005065 3.0e-89 333.6 434 47.9
Aqoxy5G00541 Aquilegia oxysepala HOM05D004053 ORTHO05D005065 3.9e-89 333.2 430 46.0
Oeu011173.1 Olea europaea HOM05D004053 ORTHO05D005065 5.1e-89 332.8 435 45.5
Glyma.19G153300 Glycine max HOM05D004053 ORTHO05D005065 1.9e-88 330.9 427 48.7
Lalb_Chr21g0306591 Lupinus albus HOM05D004053 ORTHO05D005065 1.9e-88 330.9 396 47.7
Nitab4.5_0008204g0020 Nicotiana tabacum HOM05D004053 ORTHO05D005065 3.3e-88 330.1 431 43.9
Cc01_g19820 Coffea canephora HOM05D004053 ORTHO05D005065 1.6e-87 327.8 441 45.8
Migut.D00258 Erythranthe guttata HOM05D004053 ORTHO05D005065 6.2e-87 325.9 417 45.3
VMungo0720G1290 Vigna mungo HOM05D004053 ORTHO05D005065 1.1e-86 325.1 428 47.9
MSTRG.21579 Avicennia marina HOM05D004053 ORTHO05D005065 1.4e-86 324.7 434 43.8
Phvul.007G169200 Phaseolus vulgaris HOM05D004053 ORTHO05D005065 1.4e-86 324.7 431 48.0
Sabra14G0104300 Salix brachista HOM05D004053 ORTHO05D005065 1.8e-86 324.3 452 44.0
Lalb_Chr06g0163121 Lupinus albus HOM05D004053 ORTHO05D005065 5.2e-86 322.8 418 48.3
Solyc09g072990.3 Solanum lycopersicum HOM05D004053 ORTHO05D005065 6.8e-86 322.4 430 42.8
CiPaw.08G102900 Carya illinoinensis HOM05D004053 ORTHO05D005065 1.5e-85 321.2 325 55.1
Medtr7g094470 Medicago truncatula HOM05D004053 ORTHO05D005065 2.6e-85 320.5 423 46.3
Medtr1g089980 Medicago truncatula HOM05D004053 ORTHO05D005065 3.4e-85 320.1 424 47.9
Sopen09g028800 Solanum pennellii HOM05D004053 ORTHO05D005065 7.5e-85 318.9 432 42.6
PGSC0003DMG400003799 Solanum tuberosum HOM05D004053 ORTHO05D005065 7.5e-85 318.9 432 42.4
Peaxi162Scf00777g00211 Petunia axillaris HOM05D004053 ORTHO05D005065 1.3e-84 318.2 433 43.0
Ca_10403_v3 Cicer arietinum L. HOM05D004053 ORTHO05D005065 1.7e-84 317.8 424 47.2
Nitab4.5_0001323g0010 Nicotiana tabacum HOM05D004053 ORTHO05D005065 6.4e-84 315.8 445 43.1
ECA248G2902 Erigeron canadensis HOM05D004053 ORTHO05D005065 1.9e-83 314.3 422 46.2
Psat6g168840 Pisum sativum HOM05D004053 ORTHO05D005065 1.2e-82 311.6 422 46.0
Glyma.03G150700 Glycine max HOM05D004053 ORTHO05D005065 2.1e-82 310.8 427 47.3
DCAR_005821 Daucus carota HOM05D004053 ORTHO05D005065 6.0e-82 309.3 435 44.6
Ca_08561_v3 Cicer arietinum L. HOM05D004053 ORTHO05D005065 1.7e-81 307.8 430 45.6
Ca_08595_v3 Cicer arietinum L. HOM05D004053 ORTHO05D005065 1.7e-81 307.8 430 45.6
Phvul.001G148300 Phaseolus vulgaris HOM05D004053 ORTHO05D005065 1.7e-81 307.8 425 45.9
PSO675G9209 Papaver somniferum HOM05D004053 ORTHO05D005065 3.0e-81 307.0 447 44.7
Lj1g0006875 Lotus japonicus HOM05D004053 ORTHO05D005065 6.6e-81 305.8 436 44.7
Sed0017907 Sechium edule HOM05D004053 ORTHO05D005065 1.1e-80 305.1 478 42.7
HanXRQChr01g0002441 Helianthus annuus HOM05D004053 ORTHO05D005065 1.2e-79 301.6 423 44.9
PSO541G4889 Papaver somniferum HOM05D004053 ORTHO05D005065 1.6e-79 301.2 449 45.0
arahy.Tifrunner.gnm1.ann1.V8R19R Arachis hypogaea HOM05D004053 ORTHO05D005065 3.6e-79 300.1 422 45.0
HanXRQChr02g0046661 Helianthus annuus HOM05D004053 ORTHO05D005065 3.6e-79 300.1 423 44.0
TPR.G32826 Trifolium pratense HOM05D004053 ORTHO05D005065 3.6e-79 300.1 421 44.4
Lsat_1_v5_gn_5_187500 Lactuca sativa HOM05D004053 ORTHO05D005065 1.8e-78 297.7 432 43.5
Aqoxy2G03230 Aquilegia oxysepala HOM05D004053 ORTHO05D005065 3.1e-78 297.0 442 42.3
DCAR_012450 Daucus carota HOM05D004053 ORTHO05D005065 6.8e-78 295.8 409 43.5
Actinidia00729 Actinidia chinensis HOM05D004053 ORTHO05D005065 4.4e-77 293.1 322 51.2
arahy.Tifrunner.gnm1.ann1.K8THJN Arachis hypogaea HOM05D004053 ORTHO05D005065 2.2e-76 290.8 431 44.3
Psat3g065760 Pisum sativum HOM05D004053 ORTHO05D005065 9.2e-75 285.4 426 43.0
Sp6g02950 Schrenkiella parvula HOM05D004053 ORTHO05D005065 2.1e-74 284.3 423 42.3
THA.LOC104801216 Tarenaya hassleriana HOM05D004053 ORTHO05D005065 4.6e-74 283.1 425 41.9
Lj2A1179G44 Lonicera japonica HOM05D004053 ORTHO05D005065 3.9e-73 280.0 351 45.6
VMungo1383G0556 Vigna mungo HOM05D004053 ORTHO05D005065 1.9e-72 277.7 423 42.1
C03p37430 Brassica napus HOM05D004053 ORTHO05D005065 1.2e-71 275.0 423 40.9
Thhalv10028686m.g Eutrema salsugineum HOM05D004053 ORTHO05D005065 2.8e-71 273.9 423 41.6
BolC3t16035H Brassica oleracea HOM05D004053 ORTHO05D005065 3.6e-71 273.5 423 40.7
Aa31LG5G2500 Aethionema arabicum HOM05D004053 ORTHO05D005065 6.2e-71 272.7 419 38.9
CARHR251290 Cardamine hirsuta HOM05D004053 ORTHO05D005065 4.0e-70 270.0 425 41.2
BraA03t12252Z Brassica rapa HOM05D004053 ORTHO05D005065 5.3e-70 269.6 423 41.1
THA.LOC104815946 Tarenaya hassleriana HOM05D004053 ORTHO05D005065 7.6e-69 265.8 419 41.3
SGA_v2.0_scaffold1G00444 Striga asiatica HOM05D004053 ORTHO05D005065 9.9e-69 265.4 422 40.8
AT4G02920 Arabidopsis thaliana HOM05D004053 ORTHO05D005065 2.2e-68 264.2 424 40.6
EL10Ac7g17207 Beta vulgaris HOM05D004053 ORTHO05D005065 6.4e-68 262.7 440 41.6
SalBow6G4695 Salvia bowleyana HOM05D004053 ORTHO05D005065 8.4e-68 262.3 432 39.1
A03p30730 Brassica napus HOM05D004053 ORTHO05D005065 1.4e-67 261.5 421 40.4
arahy.Tifrunner.gnm1.ann1.U9BU7H Arachis hypogaea HOM05D004053 ORTHO05D005065 7.1e-67 259.2 416 41.1
Sc05g0005080 Simmondsia chinensis HOM05D004053 ORTHO05D005065 1.2e-66 258.5 432 40.3
Carub.0006s3417 Capsella rubella HOM05D004053 ORTHO05D005065 1.7e-65 254.6 423 40.0
BcaB01g02487 Brassica carinata HOM05D004053 ORTHO05D005065 3.1e-62 243.8 423 38.8
AL6G50010 Arabidopsis lyrata HOM05D004053 ORTHO05D005065 2.4e-59 234.2 424 38.0
CDE05G2296 Ceratophyllum demersum HOM05D004053 ORTHO05D005065 2.1e-58 231.1 272 46.3
CDE11G0853 Ceratophyllum demersum HOM05D004053 ORTHO05D005065 3.5e-58 230.3 273 46.9
AL1G12850 Arabidopsis lyrata HOM05D004053 ORTHO05D005065 7.9e-58 229.2 417 37.6
AUR62033710 Chenopodium quinoa HOM05D004053 ORTHO05D005065 1.0e-57 228.8 408 37.7
AUR62036816 Chenopodium quinoa HOM05D004053 ORTHO05D005065 8.7e-57 225.7 410 36.6
AT1G03340 Arabidopsis thaliana HOM05D004053 ORTHO05D005065 1.9e-56 224.6 414 36.5
Carub.0001s0245 Capsella rubella HOM05D004053 ORTHO05D005065 1.3e-55 221.9 417 38.1
TPR.G13395 Trifolium pratense HOM05D004053 ORTHO05D005065 1.8e-54 218.0 339 43.4
Thhalv10007898m.g Eutrema salsugineum HOM05D004053 ORTHO05D005065 3.1e-54 217.2 403 36.5
Oeu041712.1 Olea europaea HOM05D004053 ORTHO05D005065 1.7e-52 211.5 172 62.8
MBI17_g34956_MAGBIO Magnolia biondii HOM05D004053 ORTHO05D005065 2.2e-52 211.1 301 45.8
Sp1g02330 Schrenkiella parvula HOM05D004053 ORTHO05D005065 4.9e-52 209.9 416 34.9
Zm00001eb417790 Zea mays HOM05D004053 ORTHO05D005065 1.9e-51 208.0 353 40.5
Os05g0143300 Oryza sativa ssp. japonica HOM05D004053 ORTHO05D005065 1.1e-48 198.7 372 36.8
ATR0665G655 Amborella trichopoda HOM05D004053 ORTHO05D005065 5.3e-38 163.3 439 31.2
BraA10t42462Z Brassica rapa HOM05D004053 ORTHO05D005065 2.6e-37 161.0 423 31.2
arahy.Tifrunner.gnm1.ann1.F0KDF8 Arachis hypogaea HOM05D004053 ORTHO05D005065 7.7e-37 159.5 221 44.8
BcaC01g06723 Brassica carinata HOM05D004053 ORTHO05D005065 4.2e-35 153.7 170 50.6
unitig_8.g3318 Utricularia gibba HOM05D004053 ORTHO05D005065 8.8e-33 146.0 413 32.7
BcaC05g24539 Brassica carinata HOM05D004053 ORTHO05D005065 1.4e-30 138.7 202 42.6
RcHm_v2.0_Chr6g0291831 Rosa chinensis HOM05D004053 ORTHO05D005065 1.2e-29 135.6 86 80.2
BolC2t09985H Brassica oleracea HOM05D004053 ORTHO05D005065 1.5e-29 135.2 182 44.0
C02p39720 Brassica napus HOM05D004053 ORTHO05D005065 3.4e-29 134.0 182 44.0
A02p25050 Brassica napus HOM05D004053 ORTHO05D005065 1.3e-28 132.1 151 48.3
BraA02t07493Z Brassica rapa HOM05D004053 ORTHO05D005065 1.3e-28 132.1 151 48.3
BcaC03g16190 Brassica carinata HOM05D004053 ORTHO05D005065 1.9e-27 128.3 173 43.9
A10p01890 Brassica napus HOM05D004053 ORTHO05D005065 7.2e-27 126.3 213 38.0
SEGI_15237 Sequoiadendron giganteum HOM05D004053 ORTHO05D005065 5.0e-20 103.6 417 24.2
Hma1.2p1_4080F.1_g338240 Hydrangea macrophylla HOM05D004053 ORTHO05D005065 4.2e-19 100.5 128 49.2
arahy.Tifrunner.gnm1.ann1.LMB138 Arachis hypogaea HOM05D004053 ORTHO05D005065 2.4e-14 84.7 65 67.7
unitig_22.g6690 Utricularia gibba HOM05D004053 ORTHO05D005065 5.0e-12 77.0 267 27.3
VMungo0540G1158 Vigna mungo HOM05D004053 ORTHO05D005065 1.6e-10 72.0 112 43.8
BcaB04g19084 Brassica carinata HOM05D004053 ORTHO05D005065 1.4e-09 68.9 62 48.4
BcaC01g06721 Brassica carinata HOM05D004053 ORTHO05D005065 1.5e-08 65.5 136 35.3
C08p10690 Brassica napus HOM05D004053 ORTHO05D031745 2.6e-08 64.7 80 38.8
BolC8t48741H Brassica oleracea HOM05D004053 ORTHO05D031745 2.6e-08 64.7 80 38.8
BcaB06g27908 Brassica carinata HOM05D000021 ORTHO05D000010 3.4e-08 64.3 79 41.8
BcaC02g12834 Brassica carinata HOM05D004053 ORTHO05D005065 5.7e-08 63.5 65 47.7
C04p39350 Brassica napus HOM05D004053 ORTHO05D005065 5.7e-08 63.5 65 47.7
BolC4t25502H Brassica oleracea HOM05D004053 ORTHO05D005065 5.7e-08 63.5 65 47.7
Hma1.2p1_0377F.1_g139390 Hydrangea macrophylla HOM05D004053 ORTHO05D005065 2.2e-07 61.6 54 53.7
arahy.Tifrunner.gnm1.ann1.59R5K9 Arachis hypogaea HOM05D004053 ORTHO05D005065 3.7e-07 60.8 81 45.7
CARHR002650 Cardamine hirsuta HOM05D004053 ORTHO05D005065 3.7e-07 60.8 81 39.5
A01p37840 Brassica napus HOM05D004053 ORTHO05D005065 4.1e-06 57.4 54 48.1
BcaC09g50477 Brassica carinata HOM05D004053 ORTHO05D005065 9.1e-06 56.2 64 45.3


User provided reference genes

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