Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN27G0952 Fragaria x ananassa HOM05D004081 ORTHO05D004935 5.8e-264 913.7 467 100.0
FvH4_2g35900 Fragaria vesca HOM05D004081 ORTHO05D004935 3.8e-239 831.2 425 96.9
RcHm_v2.0_Chr6g0305921 Rosa chinensis HOM05D004081 ORTHO05D004935 6.1e-229 797.3 470 86.6
FAN20G0986 Fragaria x ananassa HOM05D004081 ORTHO05D004935 2.6e-227 792.0 421 93.8
MD08G1116700 Malus domestica HOM05D004081 ORTHO05D004935 6.4e-178 627.9 403 78.4
Prupe.1G451100 Prunus persica HOM05D004081 ORTHO05D004935 8.6e-175 617.5 387 79.1
TAR383G0460 Trochodendron aralioides HOM05D004081 ORTHO05D004935 2.2e-162 576.2 398 71.4
Potri.006G240600 Populus trichocarpa HOM05D004081 ORTHO05D004935 4.9e-162 575.1 380 73.9
Actinidia31231 Actinidia chinensis HOM05D004081 ORTHO05D004935 2.4e-161 572.8 379 74.4
GSVIVG01035653001 Vitis vinifera HOM05D004081 ORTHO05D004935 2.4e-161 572.8 356 78.1
QL12p029513 Quercus lobata HOM05D004081 ORTHO05D004935 9.3e-161 570.9 414 69.3
Thecc.09G041800 Theobroma cacao HOM05D004081 ORTHO05D004935 4.6e-160 568.5 400 71.0
Nn3g18089 Nelumbo nucifera HOM05D004081 ORTHO05D004935 6.0e-160 568.2 367 75.5
Manes.03G062100 Manihot esculenta HOM05D004081 ORTHO05D004935 2.3e-159 566.2 399 71.4
vmacro11071 Vaccinium macrocarpon HOM05D004081 ORTHO05D004935 3.0e-159 565.8 367 74.7
Sc23g0006000 Simmondsia chinensis HOM05D004081 ORTHO05D004935 7.3e-158 561.2 358 73.5
TWI34G1344 Tripterygium wilfordii HOM05D004081 ORTHO05D004935 1.3e-157 560.5 390 72.3
Peaxi162Scf00090g00194 Petunia axillaris HOM05D004081 ORTHO05D004935 3.6e-157 558.9 356 75.8
Sabra06G0188200 Salix brachista HOM05D004081 ORTHO05D004935 4.8e-157 558.5 365 74.5
Gohir.D06G093900 Gossypium hirsutum HOM05D004081 ORTHO05D004935 1.1e-156 557.4 387 70.3
Gorai.010G108400 Gossypium raimondii HOM05D004081 ORTHO05D004935 1.1e-156 557.4 387 70.3
Migut.A00225 Erythranthe guttata HOM05D004081 ORTHO05D004935 4.0e-156 555.4 362 72.1
PGR004G0014 Punica granatum HOM05D004081 ORTHO05D004935 4.0e-156 555.4 402 70.6
COL.COLO4_18679 Corchorus olitorius HOM05D004081 ORTHO05D004935 6.9e-156 554.7 350 76.3
Nitab4.5_0001499g0090 Nicotiana tabacum HOM05D004081 ORTHO05D004935 9.0e-156 554.3 378 72.5
CSS0039336 Camellia sinensis var. sinensis HOM05D004081 ORTHO05D004935 3.4e-155 552.4 354 73.7
Eucgr.E03517 Eucalyptus grandis HOM05D004081 ORTHO05D004935 4.5e-155 552.0 352 73.9
Manes.16G071800 Manihot esculenta HOM05D004081 ORTHO05D004935 4.5e-155 552.0 389 70.2
Sc06g0000750 Simmondsia chinensis HOM05D004081 ORTHO05D004935 4.5e-155 552.0 378 70.9
Cc08_g09170 Coffea canephora HOM05D004081 ORTHO05D004935 5.8e-155 551.6 350 76.0
Oeu011271.1 Olea europaea HOM05D004081 ORTHO05D004935 9.9e-155 550.8 384 70.1
Gorai.010G108500 Gossypium raimondii HOM05D004081 ORTHO05D004935 1.7e-154 550.1 352 75.0
FAN15G1869 Fragaria x ananassa HOM05D004081 ORTHO05D004935 2.9e-154 549.3 296 92.9
Gohir.D06G094000 Gossypium hirsutum HOM05D004081 ORTHO05D004935 2.9e-154 549.3 352 74.7
MSTRG.11708 Avicennia marina HOM05D004081 ORTHO05D004935 8.4e-154 547.7 354 74.0
Duzib150G1044 Durio zibethinus HOM05D004081 ORTHO05D004935 1.9e-153 546.6 384 69.5
Nitab4.5_0002411g0020 Nicotiana tabacum HOM05D004081 ORTHO05D004935 2.4e-153 546.2 358 74.6
TPR.G1357 Trifolium pratense HOM05D004081 ORTHO05D004935 7.1e-153 544.7 401 68.8
Haze_21871 Corylus avellana HOM05D004081 ORTHO05D004935 1.6e-152 543.5 357 75.1
Duzib168G0078 Durio zibethinus HOM05D004081 ORTHO05D004935 3.5e-152 542.3 351 74.6
PGSC0003DMG400005495 Solanum tuberosum HOM05D004081 ORTHO05D004935 3.5e-152 542.3 350 73.7
Ca_15610_v3 Cicer arietinum L. HOM05D004081 ORTHO05D004935 1.3e-151 540.4 396 67.9
MELO3C003456.2 Cucumis melo HOM05D004081 ORTHO05D004935 1.8e-151 540.0 378 70.6
Sopen08g022280 Solanum pennellii HOM05D004081 ORTHO05D004935 1.8e-151 540.0 350 73.1
Cfa013350 Carpinus fangiana HOM05D004081 ORTHO05D004935 2.3e-151 539.7 413 68.0
ECA236G4667 Erigeron canadensis HOM05D004081 ORTHO05D004935 5.1e-151 538.5 348 75.0
HanXRQChr16g0510231 Helianthus annuus HOM05D004081 ORTHO05D004935 8.7e-151 537.7 378 70.1
Ah.10g035110 Amaranthus hybridus HOM05D004081 ORTHO05D004935 1.5e-150 537.0 360 73.1
Aqoxy7G01585 Aquilegia oxysepala HOM05D004081 ORTHO05D004935 1.5e-150 537.0 367 72.5
Solyc05g041530.3 Solanum lycopersicum HOM05D004081 ORTHO05D004935 1.9e-150 536.6 353 72.5
Solyc08g068400.4 Solanum lycopersicum HOM05D004081 ORTHO05D004935 2.5e-150 536.2 350 72.6
EL10Ac2g04053 Beta vulgaris HOM05D004081 ORTHO05D004935 3.3e-150 535.8 407 66.8
Sed0008402 Sechium edule HOM05D004081 ORTHO05D004935 4.3e-150 535.4 382 68.3
Sopen05g025590 Solanum pennellii HOM05D004081 ORTHO05D004935 4.3e-150 535.4 353 72.8
Glyma.04G081400 Glycine max HOM05D004081 ORTHO05D004935 2.8e-149 532.7 362 72.1
Thecc.09G041700 Theobroma cacao HOM05D004081 ORTHO05D004935 3.7e-149 532.3 353 73.4
CsaV3_3G048650 Cucumis sativus L. HOM05D004081 ORTHO05D004935 4.8e-149 531.9 366 70.8
CSS0025305 Camellia sinensis var. sinensis HOM05D004081 ORTHO05D004935 8.1e-149 531.2 355 73.0
AUR62009311 Chenopodium quinoa HOM05D004081 ORTHO05D004935 1.4e-148 530.4 360 72.5
Glyma.06G083100 Glycine max HOM05D004081 ORTHO05D004935 3.1e-148 529.3 405 66.7
AUR62029665 Chenopodium quinoa HOM05D004081 ORTHO05D004935 5.3e-148 528.5 360 71.7
arahy.Tifrunner.gnm1.ann1.QHLN3W Arachis hypogaea HOM05D004081 ORTHO05D004935 1.2e-147 527.3 366 69.4
Duzib168G2093 Durio zibethinus HOM05D004081 ORTHO05D004935 2.6e-147 526.2 356 72.2
Gohir.A06G094300 Gossypium hirsutum HOM05D004081 ORTHO05D004935 4.9e-146 521.9 396 66.9
BcaB07g29982 Brassica carinata HOM05D004081 ORTHO05D004935 8.4e-146 521.2 361 69.0
ClCG11G015230 Citrullus lanatus HOM05D004081 ORTHO05D004935 8.4e-146 521.2 405 64.7
SGA_v2.0_scaffold243G44290 Striga asiatica HOM05D004081 ORTHO05D004935 2.5e-145 519.6 327 73.7
PSO566G0156 Papaver somniferum HOM05D004081 ORTHO05D004935 3.2e-145 519.2 352 73.0
BolC2t11999H Brassica oleracea HOM05D004081 ORTHO05D004935 7.1e-145 518.1 357 69.5
BcaC03g17893 Brassica carinata HOM05D004081 ORTHO05D004935 9.3e-145 517.7 357 69.5
PGSC0003DMG400020762 Solanum tuberosum HOM05D004081 ORTHO05D004935 1.6e-144 516.9 378 67.2
AUR62041725 Chenopodium quinoa HOM05D004081 ORTHO05D004935 2.1e-144 516.5 334 74.3
arahy.Tifrunner.gnm1.ann1.Y1FCW9 Arachis hypogaea HOM05D004081 ORTHO05D004935 2.7e-144 516.2 411 63.3
VMungo1309G1316 Vigna mungo HOM05D004081 ORTHO05D004935 2.7e-144 516.2 350 70.9
Lj1g0015510 Lotus japonicus HOM05D004081 ORTHO05D004935 3.5e-144 515.8 380 67.6
Lsat_1_v5_gn_8_105500 Lactuca sativa HOM05D004081 ORTHO05D004935 1.8e-143 513.5 381 68.2
Phvul.009G106100 Phaseolus vulgaris HOM05D004081 ORTHO05D004935 2.3e-143 513.1 391 66.0
SalBow4G2011 Salvia bowleyana HOM05D004081 ORTHO05D004935 2.3e-143 513.1 364 68.4
PSO782G5115 Papaver somniferum HOM05D004081 ORTHO05D004935 3.0e-143 512.7 356 71.1
CARHR187640 Cardamine hirsuta HOM05D004081 ORTHO05D004935 5.1e-143 511.9 349 69.3
Thhalv10004493m.g Eutrema salsugineum HOM05D004081 ORTHO05D004935 5.1e-143 511.9 350 70.0
Hund03409 Selenicereus undatus HOM05D004081 ORTHO05D004935 6.7e-143 511.5 433 60.5
BcaC04g23588 Brassica carinata HOM05D004081 ORTHO05D004935 1.9e-142 510.0 358 68.2
Glyma.06G083200 Glycine max HOM05D004081 ORTHO05D004935 2.5e-142 509.6 354 69.8
CiPaw.07G206000 Carya illinoinensis HOM05D004081 ORTHO05D004935 3.3e-142 509.2 308 79.2
Psat5g023440 Pisum sativum HOM05D004081 ORTHO05D004935 7.4e-142 508.1 406 64.3
BolC9t53593H Brassica oleracea HOM05D004081 ORTHO05D004935 1.3e-141 507.3 359 68.2
Os06g0163200 Oryza sativa ssp. japonica HOM05D004081 ORTHO05D004935 8.2e-141 504.6 356 69.1
Aa31LG11G4780 Aethionema arabicum HOM05D004081 ORTHO05D004935 1.1e-140 504.2 357 68.6
BcaB04g19768 Brassica carinata HOM05D004081 ORTHO05D004935 1.8e-140 503.4 358 67.3
CSS0003690 Camellia sinensis var. sinensis HOM05D004081 ORTHO05D004935 1.8e-140 503.4 304 77.3
Rhsim02G0180500 Rhododendron simsii HOM05D004081 ORTHO05D004935 3.1e-140 502.7 326 73.6
AL6G37640 Arabidopsis lyrata HOM05D002708 ORTHO05D003516 4.5e-139 498.8 362 66.6
unitig_748.g7994 Utricularia gibba HOM05D004081 ORTHO05D004935 6.5e-138 495.0 346 69.1
CAN.G21.43 Capsicum annuum HOM05D004081 ORTHO05D004935 1.4e-137 493.8 304 75.7
Carub.0006s2355 Capsella rubella HOM05D004081 ORTHO05D004935 4.2e-137 492.3 351 65.8
Sp2g21850 Schrenkiella parvula HOM05D004081 ORTHO05D004935 9.3e-137 491.1 353 66.0
Hma1.2p1_2102F.1_g314030 Hydrangea macrophylla HOM05D004081 ORTHO05D004935 2.1e-136 490.0 281 82.9
AT5G25770 Arabidopsis thaliana HOM05D004081 ORTHO05D004935 1.3e-135 487.3 350 65.7
Lalb_Chr08g0243191 Lupinus albus HOM05D004081 ORTHO05D004935 2.3e-135 486.5 385 63.4
THA.LOC104815055 Tarenaya hassleriana HOM05D004081 ORTHO05D004935 3.9e-135 485.7 350 65.7
MBI01_g30745_MAGBIO Magnolia biondii HOM05D004081 ORTHO05D004935 1.5e-134 483.8 313 74.1
Aa31LG11G4770 Aethionema arabicum HOM05D004081 ORTHO05D004935 1.6e-133 480.3 358 65.9
BolC2t12002H Brassica oleracea HOM05D004081 ORTHO05D004935 3.7e-133 479.2 332 68.4
CSS0038651 Camellia sinensis var. sinensis HOM05D004081 ORTHO05D004935 2.4e-132 476.5 304 74.0
Glyma.06G083000 Glycine max HOM05D004081 ORTHO05D004935 3.1e-132 476.1 323 70.9
Psat5g023320 Pisum sativum HOM05D004081 ORTHO05D004935 1.2e-131 474.2 304 73.7
Lj7A705T29 Lonicera japonica HOM05D004081 ORTHO05D004935 4.5e-131 472.2 317 72.9
Lsat_1_v5_gn_8_134220 Lactuca sativa HOM05D004081 ORTHO05D004935 5.9e-131 471.9 324 70.7
Lsat_1_v5_gn_8_104541 Lactuca sativa HOM05D004081 ORTHO05D004935 5.0e-130 468.8 324 70.4
CSS0042840 Camellia sinensis var. sinensis HOM05D004081 ORTHO05D004935 9.7e-126 454.5 336 67.6
Ciclev10009208m.g Citrus clementina HOM05D004081 ORTHO05D004935 2.2e-125 453.4 262 81.3
THA.LOC104799704 Tarenaya hassleriana HOM05D004081 ORTHO05D004935 6.3e-125 451.8 356 63.2
Rhsim02G0180200 Rhododendron simsii HOM05D001113 ORTHO05D000968 1.6e-120 437.2 330 64.2
Lsat_1_v5_gn_8_104800 Lactuca sativa HOM05D004081 ORTHO05D004935 4.7e-120 435.6 324 66.7
BcaC04g23590 Brassica carinata HOM05D004081 ORTHO05D004935 4.8e-117 425.6 371 58.8
BcaC03g17895 Brassica carinata HOM05D004081 ORTHO05D004935 8.5e-114 414.8 479 47.0
A09p06100 Brassica napus HOM05D004081 ORTHO05D004935 1.0e-111 407.9 251 73.7
CAN.G21.42 Capsicum annuum HOM05D004081 ORTHO05D004935 1.1e-110 404.4 246 75.6
Phvul.009G105800 Phaseolus vulgaris HOM05D004081 ORTHO05D004935 3.7e-109 399.4 379 52.2
Cpa.g.sc7.252 Carica papaya HOM05D004081 ORTHO05D004935 1.4e-108 397.5 275 69.5
CANSAT25G3157 Cannabis sativa HOM05D004081 ORTHO05D004935 2.2e-106 390.2 256 71.5
Duzib168G0602 Durio zibethinus HOM05D004081 ORTHO05D004935 6.1e-104 382.1 325 61.2
Gohir.A06G094400 Gossypium hirsutum HOM05D004081 ORTHO05D004935 6.1e-104 382.1 381 53.3
Actinidia13318 Actinidia chinensis HOM05D004081 ORTHO05D004935 5.2e-103 379.0 222 82.0
VMungo0768G0001 Vigna mungo HOM05D004081 ORTHO05D004935 8.8e-103 378.3 363 51.2
DCAR_004492 Daucus carota HOM05D004081 ORTHO05D004935 1.2e-102 377.9 241 74.3
Phvul.009G107301 Phaseolus vulgaris HOM05D004081 ORTHO05D004935 5.4e-100 369.0 405 49.1
BolC2t12001H Brassica oleracea HOM05D004081 ORTHO05D004935 3.5e-99 366.3 287 64.5
SHI18658 Sapria himalayana HOM05D004081 ORTHO05D004935 2.7e-96 356.7 353 52.1
HPP92_021511 Vanilla planifolia HOM05D004081 ORTHO05D004935 8.8e-95 351.7 332 57.8
Lsat_1_v5_gn_8_104461 Lactuca sativa HOM05D004081 ORTHO05D004935 2.6e-94 350.1 380 52.6
Dinv30265 Davidia involucrata HOM05D004081 ORTHO05D004935 9.8e-94 348.2 246 72.4
AagrBONN_evm.TU.Sc2ySwM_228.1948 Anthoceros agrestis HOM05D004081 ORTHO05D004935 1.4e-92 344.4 363 49.6
CAN.G21.41 Capsicum annuum HOM05D004081 ORTHO05D004935 3.1e-92 343.2 210 73.8
Mapoly0161s0002 Marchantia polymorpha HOM05D004081 ORTHO05D004935 7.7e-91 338.6 298 55.4
Zm00001eb271420 Zea mays HOM05D004081 ORTHO05D004935 3.6e-88 329.7 251 64.9
CAN.G21.44 Capsicum annuum HOM05D004081 ORTHO05D004935 2.3e-82 310.5 288 56.6
ATR0121G001 Amborella trichopoda HOM05D004081 ORTHO05D004935 5.0e-82 309.3 303 55.1
Glyma.04G081600 Glycine max HOM05D004081 ORTHO05D004935 6.2e-80 302.4 192 70.3
CSS0013583 Camellia sinensis var. sinensis HOM05D004081 ORTHO05D004935 5.2e-79 299.3 195 75.4
ATR0315G111 Amborella trichopoda HOM05D004081 ORTHO05D004935 6.8e-79 298.9 219 68.0
Eucgr.L00922 Eucalyptus grandis HOM05D004081 ORTHO05D004935 6.4e-77 292.4 197 68.0
SMO089G0019 Selaginella moellendorffii HOM05D004081 ORTHO05D004935 1.9e-76 290.8 281 50.2
CSS0028651 Camellia sinensis var. sinensis HOM05D004081 ORTHO05D004935 3.6e-72 276.6 195 71.3
Lsat_1_v5_gn_8_104201 Lactuca sativa HOM05D004081 ORTHO05D004935 8.1e-72 275.4 331 49.5
Atru.chr7.2143 Acer truncatum HOM05D004081 ORTHO05D004935 4.6e-67 259.6 134 91.0
THA.LOC104809696 Tarenaya hassleriana HOM05D004081 ORTHO05D004935 1.5e-65 254.6 195 64.1
SEGI_32132 Sequoiadendron giganteum HOM05D004081 ORTHO05D004935 6.0e-51 206.1 170 61.8
Hund03408 Selenicereus undatus HOM05D004081 ORTHO05D004935 1.9e-49 201.1 126 74.6
Medtr3g110115 Medicago truncatula HOM05D004081 ORTHO05D004935 2.4e-47 194.1 330 40.0
MCO09G062 Micromonas commoda HOM05D004081 ORTHO05D004935 9.0e-47 192.2 325 35.1
Nitab4.5_0000513g0070 Nicotiana tabacum HOM05D004081 ORTHO05D004935 4.9e-45 186.4 335 38.5
Lsat_1_v5_gn_0_34401 Lactuca sativa HOM05D004081 ORTHO05D004935 1.4e-44 184.9 234 47.0
Atru.chr7.2142 Acer truncatum HOM05D004081 ORTHO05D004935 3.3e-41 173.7 117 75.2
Cre16.g676500 Chlamydomonas reinhardtii HOM05D004081 ORTHO05D004935 9.6e-41 172.2 223 40.4
PRCOL_00003400 Prasinoderma coloniale HOM05D004081 ORTHO05D004935 8.1e-40 169.1 299 32.1
AL6G37600 Arabidopsis lyrata HOM05D004081 ORTHO05D004935 8.4e-37 159.1 156 50.6
BcaB05g25303 Brassica carinata HOM05D004081 ORTHO05D004935 1.0e-34 152.1 89 75.3
PRCOL_00002146 Prasinoderma coloniale HOM05D004081 ORTHO05D004935 1.1e-28 132.1 207 37.2
Oeu014640.1 Olea europaea HOM05D004081 ORTHO05D025646 2.1e-19 101.3 110 50.9
Ciclev10010051m.g Citrus clementina HOM05D004081 ORTHO05D004935 2.8e-16 90.9 74 56.8
HPP92_021483 Vanilla planifolia HOM05D004081 ORTHO05D004935 1.5e-14 85.1 68 63.2
ATR0241G001 Amborella trichopoda HOM05D004081 ORTHO05D004935 5.9e-14 83.2 67 56.7
Cpa.g.sc7.250 Carica papaya HOM05D002779 ORTHO05D003074 5.9e-14 83.2 49 77.6
Zm00001eb357480 Zea mays HOM05D002669 ORTHO05D004935 1.3e-13 82.0 70 54.3
Zm00001eb288810 Zea mays HOM05D002669 ORTHO05D004935 2.9e-13 80.9 70 54.3
ATR0121G013 Amborella trichopoda HOM05D004081 ORTHO05D004935 1.1e-09 68.9 72 55.6
MD15G1096200 Malus domestica HOM05D004081 ORTHO05D025646 2.2e-08 64.7 46 67.4
PGSC0003DMG400019844 Solanum tuberosum HOM05D004081 ORTHO05D004935 4.1e-07 60.5 41 73.2
MBI14_g24972_MAGBIO Magnolia biondii HOM05D004081 ORTHO05D004935 3.4e-06 57.4 44 63.6


User provided reference genes

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