Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN27G0814 Fragaria x ananassa HOM05D006278 ORTHO05D007526 2.2e-254 882.1 548 100.0
FvH4_2g39641 Fragaria vesca HOM05D006278 ORTHO05D007526 2.6e-215 752.3 547 87.4
FAN20G2275 Fragaria x ananassa HOM05D006278 ORTHO05D007526 1.3e-214 750.0 546 89.0
FAN15G2069 Fragaria x ananassa HOM05D006278 ORTHO05D007526 1.1e-131 474.6 414 80.4
RcHm_v2.0_Chr6g0301251 Rosa chinensis HOM05D006278 ORTHO05D007526 1.7e-73 281.2 201 77.6
Prupe.1G377800 Prunus persica HOM05D006278 ORTHO05D007526 1.3e-57 228.4 598 37.3
FAN21G1377 Fragaria x ananassa HOM05D049070 ORTHO05D007526 2.3e-57 227.6 273 68.5
FAN21G3562 Fragaria x ananassa HOM05D049070 ORTHO05D007526 2.3e-57 227.6 273 68.5
MD08G1030100 Malus domestica HOM05D006278 ORTHO05D007526 2.3e-57 227.6 644 34.5
CANSAT35G1968 Cannabis sativa HOM05D006278 ORTHO05D007526 3.4e-37 160.6 219 46.6
MD15G1025500 Malus domestica HOM05D006278 ORTHO05D007526 4.9e-36 156.8 174 52.9
Haze_13828 Corylus avellana HOM05D006278 ORTHO05D007526 4.6e-34 150.2 217 44.7
Atru.chr13.448 Acer truncatum HOM05D006278 ORTHO05D007526 1.7e-33 148.3 229 43.2
QL12p039628 Quercus lobata HOM05D006278 ORTHO05D007526 8.6e-33 146.0 226 42.9
Cfa008229 Carpinus fangiana HOM05D006278 ORTHO05D007526 1.1e-32 145.6 217 46.1
Ciclev10000483m.g Citrus clementina HOM05D006278 ORTHO05D007526 1.2e-31 142.1 230 43.5
Rhsim06G0031900 Rhododendron simsii HOM05D006278 ORTHO05D007526 1.6e-31 141.7 233 43.3
COL.COLO4_26292 Corchorus olitorius HOM05D006278 ORTHO05D007526 3.6e-31 140.6 213 45.5
Lj4P787T11 Lonicera japonica HOM05D006278 ORTHO05D007526 1.4e-30 138.7 179 47.5
Duzib041G0028 Durio zibethinus HOM05D006278 ORTHO05D007526 1.8e-30 138.3 226 44.2
Dinv36098 Davidia involucrata HOM05D006278 ORTHO05D007526 3.1e-30 137.5 209 45.9
Potri.002G034700 Populus trichocarpa HOM05D006278 ORTHO05D007526 4.0e-30 137.1 219 43.8
Manes.05G158000 Manihot esculenta HOM05D006278 ORTHO05D007526 1.2e-29 135.6 226 41.2
CSS0025999 Camellia sinensis var. sinensis HOM05D006278 ORTHO05D007526 1.5e-29 135.2 151 51.0
Oeu029831.2 Olea europaea HOM05D006278 ORTHO05D007526 1.5e-29 135.2 229 41.9
Duzib093G1165 Durio zibethinus HOM05D006278 ORTHO05D007526 2.0e-29 134.8 230 41.3
TWI12G1431 Tripterygium wilfordii HOM05D006278 ORTHO05D007526 2.0e-29 134.8 230 40.0
Aqoxy6G01136 Aquilegia oxysepala HOM05D006278 ORTHO05D007526 4.4e-29 133.7 230 40.4
Potri.005G228400 Populus trichocarpa HOM05D006278 ORTHO05D007526 8.4e-28 129.4 217 40.6
Sc02g0005980 Simmondsia chinensis HOM05D006278 ORTHO05D007526 1.1e-27 129.0 218 40.8
Ah.05g169430 Amaranthus hybridus HOM05D006278 ORTHO05D007526 1.4e-27 128.6 226 40.7
PSO541G0933 Papaver somniferum HOM05D006278 ORTHO05D007526 1.4e-27 128.6 178 45.5
TAR381G0716 Trochodendron aralioides HOM05D006278 ORTHO05D007526 1.4e-27 128.6 235 42.6
TAR245G0008 Trochodendron aralioides HOM05D006278 ORTHO05D007526 3.2e-27 127.5 235 42.1
AUR62033855 Chenopodium quinoa HOM05D006278 ORTHO05D007526 4.2e-27 127.1 222 40.1
Nitab4.5_0002224g0110 Nicotiana tabacum HOM05D006278 ORTHO05D007526 1.6e-26 125.2 187 39.6
CiPaw.04G062900 Carya illinoinensis HOM05D006278 ORTHO05D007526 2.1e-26 124.8 580 28.1
AUR62041670 Chenopodium quinoa HOM05D006278 ORTHO05D007526 2.1e-26 124.8 225 39.1
PSO675G3973 Papaver somniferum HOM05D006278 ORTHO05D007526 2.1e-26 124.8 178 43.8
DCAR_017552 Daucus carota HOM05D006278 ORTHO05D007526 4.6e-26 123.6 216 38.4
Oeu049934.1 Olea europaea HOM05D006278 ORTHO05D007526 7.8e-26 122.9 225 39.6
Dinv39433 Davidia involucrata HOM05D006278 ORTHO05D007526 1.0e-25 122.5 183 45.4
Eucgr.F01578 Eucalyptus grandis HOM05D006278 ORTHO05D007526 2.3e-25 121.3 224 37.9
Sabra02G0027900 Salix brachista HOM05D006278 ORTHO05D007526 2.3e-25 121.3 222 39.6
Gohir.D06G004900 Gossypium hirsutum HOM05D006278 ORTHO05D007526 3.9e-25 120.6 576 28.0
Gorai.010G009500 Gossypium raimondii HOM05D006278 ORTHO05D007526 3.9e-25 120.6 576 28.0
Thecc.08G029100 Theobroma cacao HOM05D006278 ORTHO05D007526 1.1e-24 119.0 584 31.5
CiPaw.03G096900 Carya illinoinensis HOM05D006278 ORTHO05D007526 1.9e-24 118.2 237 37.1
Nitab4.5_0000017g0170 Nicotiana tabacum HOM05D006278 ORTHO05D007526 1.6e-23 115.2 225 38.2
CsaV3_2G028850 Cucumis sativus L. HOM05D006278 ORTHO05D007526 2.1e-23 114.8 222 36.0
Actinidia15341 Actinidia chinensis HOM05D006278 ORTHO05D007526 6.2e-23 113.2 205 40.5
Gohir.A06G009400 Gossypium hirsutum HOM05D006278 ORTHO05D007526 6.2e-23 113.2 573 27.7
Ca_13364_v3 Cicer arietinum L. HOM05D006278 ORTHO05D007526 1.1e-22 112.5 224 34.8
TAR376G1184 Trochodendron aralioides HOM05D006278 ORTHO05D007526 1.8e-22 111.7 144 51.4
CANSAT25G3418 Cannabis sativa HOM05D006278 ORTHO05D007526 2.4e-22 111.3 180 43.3
TAR101G0003 Trochodendron aralioides HOM05D006278 ORTHO05D007526 2.4e-22 111.3 224 40.6
Lalb_Chr24g0398921 Lupinus albus HOM05D006278 ORTHO05D007526 3.1e-22 110.9 223 35.9
Peaxi162Scf00020g00184 Petunia axillaris HOM05D006278 ORTHO05D007526 3.1e-22 110.9 175 37.1
Cpa.g.sc3.303 Carica papaya HOM05D006278 ORTHO05D007526 6.9e-22 109.8 212 40.1
MSTRG.1269 Avicennia marina HOM05D006278 ORTHO05D007526 1.5e-21 108.6 224 37.9
ClCG08G014920 Citrullus lanatus HOM05D006278 ORTHO05D007526 2.6e-21 107.8 210 38.6
Nitab4.5_0004768g0010 Nicotiana tabacum HOM05D006278 ORTHO05D007526 2.6e-21 107.8 220 36.8
Peaxi162Scf00303g00043 Petunia axillaris HOM05D006278 ORTHO05D007526 2.6e-21 107.8 223 36.3
CAN.G424.60 Capsicum annuum HOM05D006278 ORTHO05D007526 5.8e-21 106.7 187 39.0
MBI10_g18263_MAGBIO Magnolia biondii HOM05D006278 ORTHO05D007526 9.9e-21 105.9 172 42.4
PGSC0003DMG400003686 Solanum tuberosum HOM05D006278 ORTHO05D007526 9.9e-21 105.9 224 33.0
Sabra05G0176300 Salix brachista HOM05D006278 ORTHO05D007526 1.7e-20 105.1 218 36.7
TPR.G20186 Trifolium pratense HOM05D006278 ORTHO05D007526 1.7e-20 105.1 224 35.3
CAN.G1226.35 Capsicum annuum HOM05D006278 ORTHO05D007526 1.1e-19 102.4 209 34.4
TAR376G0700 Trochodendron aralioides HOM05D006278 ORTHO05D007526 1.1e-19 102.4 200 41.0
Nn5g29644 Nelumbo nucifera HOM05D006278 ORTHO05D007526 1.4e-19 102.1 212 37.7
Migut.O00967 Erythranthe guttata HOM05D006278 ORTHO05D007526 4.2e-19 100.5 147 42.2
Solyc04g080520.1 Solanum lycopersicum HOM05D006278 ORTHO05D007526 4.2e-19 100.5 221 32.6
Sopen04g034110 Solanum pennellii HOM05D006278 ORTHO05D007526 5.4e-19 100.1 224 32.1
Lj5g0016594 Lotus japonicus HOM05D006278 ORTHO05D007526 9.3e-19 99.4 613 25.1
Psat6g008120 Pisum sativum HOM05D006278 ORTHO05D007526 9.3e-19 99.4 221 33.5
Medtr1g022365 Medicago truncatula HOM05D006278 ORTHO05D007526 4.6e-18 97.1 212 33.5
PGR004G0534 Punica granatum HOM05D006278 ORTHO05D007526 7.9e-18 96.3 230 36.5
Thhalv10018443m.g Eutrema salsugineum HOM05D006278 ORTHO05D007526 1.8e-17 95.1 148 37.8
BcaNung04385 Brassica carinata HOM05D006278 ORTHO05D007526 3.0e-17 94.4 171 39.2
SGA_v2.0_scaffold201G41409 Striga asiatica HOM05D006278 ORTHO05D007526 5.1e-17 93.6 233 35.2
Nn2g14857 Nelumbo nucifera HOM05D006278 ORTHO05D007526 1.5e-16 92.0 226 35.0
PGSC0003DMG400005375 Solanum tuberosum HOM05D006278 ORTHO05D007526 1.5e-16 92.0 224 33.0
C06p49230 Brassica napus HOM05D006278 ORTHO05D007526 2.5e-16 91.3 198 35.4
Glyma.14G073601 Glycine max HOM05D006278 ORTHO05D007526 5.6e-16 90.1 621 27.2
Carub.0002s2208 Capsella rubella HOM05D006278 ORTHO05D007526 9.6e-16 89.4 218 34.9
Aa31LG4G5490 Aethionema arabicum HOM05D006278 ORTHO05D007526 1.3e-15 89.0 232 33.6
BraA07t31626Z Brassica rapa HOM05D006278 ORTHO05D007526 6.2e-15 86.7 199 34.7
Sp5g30420 Schrenkiella parvula HOM05D006278 ORTHO05D007526 6.2e-15 86.7 181 36.5
A07p40840 Brassica napus HOM05D006278 ORTHO05D007526 1.1e-14 85.9 199 34.7
Sed0000803 Sechium edule HOM05D006278 ORTHO05D007526 1.1e-14 85.9 224 32.6
AT1G75260 Arabidopsis thaliana HOM05D006278 ORTHO05D007526 1.8e-14 85.1 154 39.6
BcaC08g47365 Brassica carinata HOM05D006278 ORTHO05D007526 1.8e-14 85.1 219 34.7
ECA247G1288 Erigeron canadensis HOM05D006278 ORTHO05D007526 2.4e-14 84.7 176 34.1
BolC6t39956H Brassica oleracea HOM05D006278 ORTHO05D007526 5.3e-14 83.6 220 34.5
AL2G35180 Arabidopsis lyrata HOM05D006278 ORTHO05D007526 1.5e-13 82.0 223 31.8
CARHR068590 Cardamine hirsuta HOM05D006278 ORTHO05D007526 5.8e-13 80.1 227 33.0
VMungo0647G1119 Vigna mungo HOM05D006278 ORTHO05D007526 5.8e-13 80.1 601 26.1
THA.LOC104809215 Tarenaya hassleriana HOM05D006278 ORTHO05D007526 1.3e-12 79.0 180 35.0
Glyma.17G251400 Glycine max HOM05D006278 ORTHO05D007526 1.7e-12 78.6 615 29.3
CDE04G1483 Ceratophyllum demersum HOM05D003484 ORTHO05D004152 4.2e-11 73.9 219 32.0
CDE06G2487 Ceratophyllum demersum HOM05D006278 ORTHO05D007526 9.3e-11 72.8 184 36.4
ATR0568G158 Amborella trichopoda HOM05D006278 ORTHO05D007526 1.2e-10 72.4 170 34.1
Glyma.04G031100 Glycine max HOM05D006278 ORTHO05D007526 4.6e-10 70.5 179 29.6
Phvul.001G013600 Phaseolus vulgaris HOM05D006278 ORTHO05D007526 6.0e-10 70.1 632 26.1
Lalb_Chr08g0245891 Lupinus albus HOM05D006278 ORTHO05D007526 7.9e-10 69.7 139 37.4
unitig_0.g2047 Utricularia gibba HOM05D006278 ORTHO05D007526 1.0e-09 69.3 212 31.1
DCAR_019537 Daucus carota HOM05D006278 ORTHO05D007526 1.8e-09 68.6 175 33.1
Phvul.009G058700 Phaseolus vulgaris HOM05D006278 ORTHO05D007526 1.8e-09 68.6 189 29.1
Lj1g0002957 Lotus japonicus HOM05D006278 ORTHO05D007526 2.3e-09 68.2 199 31.7
Medtr3g111950 Medicago truncatula HOM05D006278 ORTHO05D007526 6.7e-09 66.6 148 32.4
TPR.G12310 Trifolium pratense HOM05D006278 ORTHO05D007526 6.7e-09 66.6 209 27.3
Glyma.06G031201 Glycine max HOM05D006278 ORTHO05D007526 8.7e-09 66.2 192 29.7
Ca_15506_v3 Cicer arietinum L. HOM05D006278 ORTHO05D007526 3.3e-08 64.3 203 28.1
Gohir.A03G079100 Gossypium hirsutum HOM05D000342 ORTHO05D000217 1.3e-07 62.4 178 34.8
VMungo1309G1357 Vigna mungo HOM05D006278 ORTHO05D007526 1.3e-07 62.4 213 27.7
CiPaw.02G043100 Carya illinoinensis HOM05D004242 ORTHO05D004349 1.6e-07 62.0 174 35.6
Gohir.D02G095000 Gossypium hirsutum HOM05D000342 ORTHO05D000217 3.7e-07 60.8 178 33.7
CiPaw.02G043200 Carya illinoinensis HOM05D004242 ORTHO05D004349 4.8e-07 60.5 97 40.2
HPP92_004792 Vanilla planifolia HOM05D006278 ORTHO05D007526 4.8e-07 60.5 171 29.2
ECA232G2514 Erigeron canadensis HOM05D006278 ORTHO05D007526 8.1e-07 59.7 176 28.4
MBI13_g41464_MAGBIO Magnolia biondii HOM05D004242 ORTHO05D004349 1.1e-06 59.3 161 29.2
Psat5g012120 Pisum sativum HOM05D006278 ORTHO05D007526 1.1e-06 59.3 146 30.1
Gorai.005G108300 Gossypium raimondii HOM05D000342 ORTHO05D000217 1.4e-06 58.9 178 33.7
SEGI_39042 Sequoiadendron giganteum HOM05D006278 ORTHO05D007526 2.4e-06 58.2 188 33.0
Phvul.006G115800 Phaseolus vulgaris HOM05D004242 ORTHO05D004349 9.0e-06 56.2 127 35.4


User provided reference genes

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