Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN27G0751 Fragaria x ananassa HOM05D000593 ORTHO05D002268 2.3e-50 201.8 93 100.0
FvH4_5g25511 Fragaria vesca HOM05D000593 ORTHO05D000562 5.2e-39 164.1 83 90.4
FvH4_7g19111 Fragaria vesca HOM05D000593 ORTHO05D002268 2.8e-16 88.6 84 51.2
FvH4_6g23211 Fragaria vesca HOM05D000045 ORTHO05D009940 3.1e-15 85.1 84 50.0
FvH4_6g12551 Fragaria vesca HOM05D000593 ORTHO05D002268 3.9e-10 68.2 87 42.5
FAN05G4897 Fragaria x ananassa HOM05D000593 ORTHO05D002268 2.5e-09 65.5 61 50.8
MD08G1164400 Malus domestica HOM05D000593 ORTHO05D000562 2.5e-09 65.5 57 52.6
CSS0028555 Camellia sinensis var. sinensis HOM05D000593 ORTHO05D002268 1.4e-07 59.7 81 38.3
Ca_15409_v3 Cicer arietinum L. HOM05D000768 ORTHO05D000665 1.4e-07 59.7 61 49.2
Ca_29880_v3 Cicer arietinum L. HOM05D000768 ORTHO05D000665 1.4e-07 59.7 61 49.2
Rhsim06G0090900 Rhododendron simsii HOM05D003216 ORTHO05D002268 1.4e-07 59.7 63 44.4
Ca_14741_v3 Cicer arietinum L. HOM05D003326 ORTHO05D001185 1.8e-07 59.3 63 42.9
FvH4_3g04011 Fragaria vesca HOM05D000593 ORTHO05D000562 1.8e-07 59.3 64 40.6
Gorai.008G062800 Gossypium raimondii HOM05D000593 ORTHO05D000562 3.1e-07 58.5 54 46.3
CSS0033855 Camellia sinensis var. sinensis HOM05D000593 ORTHO05D002268 4.0e-07 58.2 73 39.7
Rhsim01G0176400 Rhododendron simsii HOM05D003216 ORTHO05D002268 4.0e-07 58.2 56 46.4
Ca_07608_v3 Cicer arietinum L. HOM05D004283 ORTHO05D002268 5.3e-07 57.8 56 46.4
Gorai.005G173000 Gossypium raimondii HOM05D000593 ORTHO05D000562 5.3e-07 57.8 54 42.6
Ca_25321_v3 Cicer arietinum L. HOM05D003216 ORTHO05D002268 6.9e-07 57.4 58 44.8
Gorai.006G065500 Gossypium raimondii HOM05D000593 ORTHO05D000562 9.0e-07 57.0 67 38.8
TPR.G14990 Trifolium pratense HOM05D003216 ORTHO05D002268 9.0e-07 57.0 60 41.7
Atru.chr4.890 Acer truncatum HOM05D000593 ORTHO05D000562 1.2e-06 56.6 61 44.3
CSS0006571 Camellia sinensis var. sinensis HOM05D000593 ORTHO05D002268 1.2e-06 56.6 73 39.7
Ca_23377_v3 Cicer arietinum L. HOM05D000593 ORTHO05D002268 1.2e-06 56.6 56 42.9
FvH4_6g38841 Fragaria vesca HOM05D003216 ORTHO05D002268 1.2e-06 56.6 50 50.0
CSS0038609 Camellia sinensis var. sinensis HOM05D000593 ORTHO05D000562 2.0e-06 55.8 69 40.6
Lj6A78T35 Lonicera japonica HOM05D000011 ORTHO05D002639 2.0e-06 55.8 60 45.0
TPR.G2406 Trifolium pratense HOM05D003216 ORTHO05D002268 2.0e-06 55.8 60 40.0
HanXRQChr15g0483301 Helianthus annuus HOM05D000593 ORTHO05D002268 2.6e-06 55.5 71 31.0
TPR.G11097 Trifolium pratense HOM05D003216 ORTHO05D002268 2.6e-06 55.5 60 40.0
TWI59G1113 Tripterygium wilfordii HOM05D000593 ORTHO05D000562 2.6e-06 55.5 62 43.5
Atru.chr2.576 Acer truncatum HOM05D000593 ORTHO05D000562 3.4e-06 55.1 61 42.6
CSS0017978 Camellia sinensis var. sinensis HOM05D000593 ORTHO05D000562 3.4e-06 55.1 70 40.0
Gohir.D07G195440 Gossypium hirsutum HOM05D000593 ORTHO05D000562 3.4e-06 55.1 54 44.4
Hma1.2p1_1172F.1_g263670 Hydrangea macrophylla HOM05D000593 ORTHO05D002268 3.4e-06 55.1 67 40.3
TPR.G22014 Trifolium pratense HOM05D003216 ORTHO05D002268 3.4e-06 55.1 60 40.0
CSS0038546 Camellia sinensis var. sinensis HOM05D000593 ORTHO05D000562 4.4e-06 54.7 70 40.0
SGA_v2.0_scaffold162G37890 Striga asiatica HOM05D003216 ORTHO05D002268 4.4e-06 54.7 59 44.1
TWI63G1264 Tripterygium wilfordii HOM05D000593 ORTHO05D000562 4.4e-06 54.7 63 39.7
TWI75G0671 Tripterygium wilfordii HOM05D000593 ORTHO05D000562 4.4e-06 54.7 63 39.7
TWI79G1065 Tripterygium wilfordii HOM05D000593 ORTHO05D000562 4.4e-06 54.7 63 39.7
GSVIVG01023955001 Vitis vinifera HOM05D000593 ORTHO05D000562 4.4e-06 54.7 74 41.9
CSS0009535 Camellia sinensis var. sinensis HOM05D000593 ORTHO05D000562 5.8e-06 54.3 69 39.1
Ca_02101_v3 Cicer arietinum L. HOM05D000593 ORTHO05D002268 5.8e-06 54.3 56 44.6
Ca_11910_v3 Cicer arietinum L. HOM05D003216 ORTHO05D002268 5.8e-06 54.3 59 42.4
FvH4_4g16652 Fragaria vesca HOM05D000593 ORTHO05D000562 5.8e-06 54.3 66 40.9
Gohir.D02G153950 Gossypium hirsutum HOM05D000593 ORTHO05D000562 5.8e-06 54.3 54 40.7
TPR.G18522 Trifolium pratense HOM05D000593 ORTHO05D002268 5.8e-06 54.3 60 40.0
TPR.G22653 Trifolium pratense HOM05D003216 ORTHO05D002268 5.8e-06 54.3 49 44.9
TWI09G0326 Tripterygium wilfordii HOM05D000593 ORTHO05D000562 5.8e-06 54.3 52 44.2
TWI14G0423 Tripterygium wilfordii HOM05D000593 ORTHO05D000562 5.8e-06 54.3 65 44.6
TWI31G0828 Tripterygium wilfordii HOM05D000593 ORTHO05D002268 5.8e-06 54.3 52 48.1
TWI79G0011 Tripterygium wilfordii HOM05D000593 ORTHO05D000562 5.8e-06 54.3 77 35.1
Atru.chr6.1396 Acer truncatum HOM05D000593 ORTHO05D000562 7.6e-06 53.9 63 44.4
TWI36G1645 Tripterygium wilfordii HOM05D000593 ORTHO05D002268 7.6e-06 53.9 52 44.2
Ah.12g052860 Amaranthus hybridus HOM05D009642 ORTHO05D011683 9.9e-06 53.5 70 32.9
Ca_10000_v3 Cicer arietinum L. HOM05D000009 ORTHO05D000008 9.9e-06 53.5 55 38.2
SGA_v2.0_scaffold106G30618 Striga asiatica HOM05D000593 ORTHO05D002268 9.9e-06 53.5 65 35.4
SGA_v2.0_scaffold17G08149 Striga asiatica HOM05D000593 ORTHO05D002268 9.9e-06 53.5 65 35.4
SGA_v2.0_scaffold1G00721 Striga asiatica HOM05D000593 ORTHO05D002268 9.9e-06 53.5 65 35.4
SGA_v2.0_scaffold22G09752 Striga asiatica HOM05D000593 ORTHO05D002268 9.9e-06 53.5 65 35.4
SGA_v2.0_scaffold31G12776 Striga asiatica HOM05D000593 ORTHO05D002268 9.9e-06 53.5 65 35.4
SGA_v2.0_scaffold57G20229 Striga asiatica HOM05D006226 ORTHO05D007738 9.9e-06 53.5 65 35.4


User provided reference genes

Program Settings